genome.fa.s10.2.7.7.80.10.50.1000.59.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  59  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20102556--20103764	419	2.9	414	86	3	1591	24	21	16	37	1.93
20106084--20106193	54	2.0	54	98	0	211	28	15	26	30	1.96
20112567--20112670	31	3.5	31	78	10	99	36	4	23	35	1.76
20112563--20112850	30	9.6	30	80	5	167	38	3	24	32	1.74
20112562--20112850	60	4.8	60	75	5	228	38	3	24	32	1.73
20113532--20113699	85	2.0	85	85	4	232	22	21	17	38	1.94
20113466--20114093	209	3.0	208	90	1	979	22	21	18	37	1.94
20113741--20113908	85	2.0	85	84	0	219	23	22	16	38	1.93
20115089--20115290	30	6.8	29	76	11	169	36	1	23	38	1.64
20115089--20115289	59	3.4	60	80	8	189	36	1	22	38	1.64
20115089--20115294	89	2.3	89	79	12	226	36	1	23	37	1.64
20118356--20118514	29	5.4	30	77	5	128	35	1	25	38	1.64
20118357--20118520	58	2.8	58	84	4	197	37	1	24	37	1.64
20118355--20118546	58	3.3	59	79	7	153	34	2	24	38	1.67
20118908--20118947	7	5.7	7	100	0	80	0	70	0	30	0.88
20119299--20119341	2	21.5	2	100	0	86	48	0	0	51	1.00
20124548--20124608	25	2.4	26	75	8	63	62	6	9	21	1.49
20124735--20124885	29	5.2	28	75	10	135	35	3	26	35	1.73
20124757--20124885	59	2.2	58	80	6	143	33	3	27	34	1.75
20126270--20126302	17	1.9	17	100	0	66	57	0	0	42	0.98
20126785--20127060	124	2.2	124	92	0	471	27	18	15	38	1.92
20126908--20127349	209	2.1	209	88	3	649	25	21	15	37	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20127194--20127353	85	1.9	85	84	0	212	26	23	13	36	1.92
20138825--20138875	24	2.1	23	86	13	68	35	1	0	62	1.06
20139712--20139765	25	2.1	25	82	6	63	42	0	1	55	1.10
20149536--20149585	3	16.7	3	100	0	100	68	0	32	0	0.90
20155575--20155911	29	11.6	29	71	12	158	34	25	3	36	1.74
20155575--20155911	58	5.8	59	77	6	237	34	25	3	36	1.74
20155691--20155951	116	2.2	117	82	7	300	31	24	4	39	1.76
20155745--20156018	58	4.7	59	75	8	188	32	24	5	38	1.78
20155691--20156000	116	2.7	117	81	8	296	32	22	4	40	1.75
20156923--20156966	22	2.0	22	100	0	88	54	18	0	27	1.44
20157912--20157953	21	2.0	22	85	4	59	66	4	2	26	1.23
20160465--20160708	90	2.8	88	82	5	294	32	11	20	34	1.89
20162008--20162054	4	11.8	4	95	0	85	51	2	23	23	1.59
20163557--20163660	38	2.8	37	88	2	145	14	17	30	37	1.89
20163555--20163680	38	3.3	37	82	4	144	13	17	30	38	1.88
20172280--20172326	24	2.0	24	86	0	67	40	0	2	57	1.11
20172300--20172356	18	3.1	19	82	10	64	40	0	3	56	1.17
20172300--20172355	19	3.1	18	84	7	60	41	0	3	55	1.17
20178947--20179098	10	16.4	9	66	17	55	63	1	3	30	1.20
20178960--20179025	32	2.0	33	88	2	98	60	0	1	37	1.06
20179037--20179167	19	6.9	18	71	17	79	62	1	7	28	1.31
20179162--20179197	17	2.1	17	89	0	54	58	13	2	25	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20179364--20179420	19	2.9	19	75	14	62	40	1	3	54	1.28
20179634--20179839	93	2.3	92	80	8	226	34	8	16	40	1.79
20204893--20205147	43	5.9	43	87	2	323	32	10	20	36	1.87
20205343--20205401	28	2.1	28	83	0	73	23	13	10	52	1.71
20217968--20218089	43	2.8	43	89	0	172	28	11	22	37	1.89
20217964--20218101	43	3.2	43	83	4	152	31	10	23	35	1.88
20218329--20218387	28	2.1	28	87	0	82	22	16	13	47	1.82
20226271--20226308	20	1.9	20	88	0	58	5	23	13	57	1.56
20226656--20226705	23	2.2	22	85	3	64	14	0	10	76	1.03
20228576--20228625	26	1.9	26	91	0	82	42	18	0	40	1.50
20229132--20229170	18	2.0	20	85	9	55	28	0	17	53	1.44
20234466--20234570	40	2.7	40	87	1	149	24	19	27	28	1.98
20234506--20234959	80	5.7	80	87	2	617	26	18	22	32	1.97
20234506--20234952	160	2.8	160	91	2	693	26	18	22	32	1.97
20235014--20235239	100	2.3	99	88	0	344	19	23	20	37	1.94
20235013--20235239	50	4.6	50	83	0	294	18	23	20	37	1.94
20244250--20244279	12	2.6	11	94	5	51	73	0	0	26	0.84
20244998--20245041	23	1.9	23	86	9	63	47	0	4	47	1.22
20245465--20245508	12	3.6	12	78	6	52	4	31	0	63	1.14
20245910--20246447	270	2.0	268	98	0	1040	24	28	18	28	1.98
20247854--20247885	11	2.9	11	90	0	55	68	3	0	28	1.04
20257561--20257717	85	1.8	85	84	2	217	38	16	23	21	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20257650--20257781	48	2.8	48	83	0	165	40	15	24	19	1.91
20257691--20258188	208	2.4	208	89	1	775	38	17	21	23	1.93
20257814--20258773	293	3.3	291	87	1	1294	39	16	20	23	1.92
20258023--20258272	85	3.0	84	89	2	360	38	16	22	22	1.93
20258107--20258480	207	1.8	208	89	1	599	38	17	21	22	1.93
20258362--20258510	37	3.7	37	69	19	111	37	18	20	23	1.94
20258322--20258565	85	2.9	85	93	0	407	39	17	20	22	1.92
20258407--20258567	48	3.6	48	66	17	128	42	15	18	23	1.89
20258407--20258979	208	2.7	209	80	6	636	39	17	19	23	1.92
20257699--20258974	500	2.5	495	81	5	1372	38	17	20	23	1.93
20259457--20259488	15	2.1	15	100	0	64	56	0	0	43	0.99
20260091--20260122	11	2.9	11	90	0	55	68	3	0	28	1.04
20262263--20262360	29	3.4	29	87	7	137	54	0	0	45	1.00
20262263--20262374	29	3.8	30	81	10	115	53	0	0	46	1.00
20263225--20263265	19	2.0	21	90	9	68	51	0	0	48	1.00
20266392--20266429	18	2.1	18	90	9	60	55	15	5	23	1.61
20267517--20267582	33	2.0	33	81	0	78	53	1	1	43	1.19
20273196--20273266	11	5.9	11	71	18	52	42	1	1	54	1.17
20273891--20273929	12	3.4	12	86	13	64	41	7	0	51	1.31
20273887--20273929	22	2.0	22	100	0	86	39	9	0	51	1.34
20273887--20273933	10	4.5	10	89	10	76	38	10	0	51	1.37
20274076--20274112	3	12.7	3	94	5	67	70	0	0	29	0.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20275134--20275528	30	13.2	30	83	7	432	37	21	3	36	1.72
20275134--20275528	60	6.6	60	85	4	498	37	21	3	36	1.72
20275124--20275582	90	5.1	89	82	7	477	37	22	3	36	1.73
20275557--20275686	58	2.2	58	89	4	190	33	31	1	33	1.67
20278425--20278468	20	2.3	20	92	7	74	36	0	0	63	0.95
20278456--20278903	203	2.2	203	88	4	645	26	10	11	51	1.70
20278524--20278903	96	3.8	97	74	15	321	26	10	11	52	1.67
20281915--20281965	23	2.4	21	79	17	61	62	7	7	21	1.48
20282022--20282198	30	6.0	29	76	12	155	34	3	24	37	1.73
20282057--20282202	58	2.5	59	82	11	192	34	2	25	37	1.68
20282017--20282186	88	1.9	89	83	5	220	34	4	25	35	1.75
20282782--20282821	20	2.0	21	90	5	64	12	47	22	17	1.81
20283290--20283321	13	2.5	13	94	0	55	34	0	0	65	0.93
20283291--20283349	22	2.7	22	80	12	68	33	0	6	59	1.24
20283997--20284032	16	2.2	16	100	0	72	38	0	33	27	1.57
20286726--20286768	17	2.5	17	88	0	59	55	13	9	20	1.66
20291907--20291953	18	2.6	18	83	6	60	17	19	23	40	1.91
20298219--20298269	21	2.4	21	86	0	66	29	15	23	31	1.95
20302948--20302978	15	2.0	15	93	6	53	77	0	0	22	0.77
20304057--20304570	42	12.6	42	82	8	600	25	16	27	30	1.97
20304078--20304560	39	12.0	39	83	8	538	24	17	27	30	1.97
20304057--20304570	81	6.3	80	88	3	681	25	16	27	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20304548--20304589	22	2.0	21	86	13	61	33	9	28	28	1.88
20304467--20304667	100	2.0	102	90	2	316	28	14	27	29	1.95
20304570--20304981	40	10.4	39	75	12	302	25	15	27	31	1.96
20304570--20304976	39	10.2	40	76	11	288	26	15	27	31	1.96
20304597--20304863	81	3.3	80	85	3	340	25	16	28	29	1.96
20304386--20304748	181	2.0	183	86	2	507	26	15	28	29	1.96
20304570--20304976	81	5.1	79	77	9	269	26	15	27	31	1.96
20305204--20305731	49	10.8	49	74	7	285	21	26	16	35	1.94
20305204--20305727	98	5.4	98	81	4	514	21	26	16	35	1.95
20305204--20305688	194	2.5	195	84	3	602	21	26	16	35	1.94

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135