genome.fa.s10.2.7.7.80.10.50.1000.96.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  96  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32682533--32682594	18	3.4	18	86	0	88	51	9	29	9	1.66
32686376--32686483	49	2.2	49	91	3	173	37	5	16	39	1.72
32686405--32686477	24	3.0	23	66	24	60	38	5	17	38	1.73
32687702--32687732	16	1.9	16	93	0	53	29	0	35	35	1.58
32690845--32691428	293	2.0	293	91	1	947	24	24	17	33	1.96
32722704--32722744	16	2.6	16	100	0	82	24	12	21	41	1.87
32728687--32728763	39	2.0	39	87	2	111	36	29	14	19	1.91
32732183--32732248	17	3.9	17	81	0	78	18	22	12	46	1.81
32733453--32733550	38	2.6	37	80	7	117	28	24	15	31	1.95
32735636--32735674	11	3.5	11	79	6	51	79	0	7	12	0.93
32738101--32738133	12	2.6	13	95	4	59	72	12	0	15	1.12
32741541--32741565	13	1.9	13	100	0	50	48	8	0	44	1.32
32748315--32748344	16	1.9	16	93	6	53	20	16	3	60	1.50
32762329--32762370	21	2.0	20	86	13	59	0	19	2	78	0.86
32763115--32763162	21	2.3	21	81	0	60	4	33	6	56	1.44
32779761--32779868	37	2.9	37	80	0	99	27	27	17	26	1.98
32779944--32779979	16	2.3	15	90	9	63	33	19	13	33	1.91
32785104--32785183	37	2.2	37	90	4	126	27	23	23	25	2.00
32790316--32790356	11	3.7	11	86	0	64	19	31	26	21	1.97
32790345--32790375	7	4.4	7	91	0	53	16	25	29	29	1.96
32797637--32797676	14	2.9	14	92	0	62	17	7	30	45	1.76
32797637--32797678	21	2.0	21	86	9	59	16	9	28	45	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32806841--32806883	21	2.0	23	90	9	72	6	13	0	79	0.93
32807009--32807070	29	2.1	29	100	0	124	25	9	12	51	1.70
32816084--32816165	28	2.9	28	98	0	155	21	30	17	30	1.96
32816140--32816274	36	3.8	36	90	0	225	22	27	16	33	1.95
32823481--32823513	17	1.9	17	88	11	50	66	3	12	18	1.36
32831426--32831536	25	4.4	25	80	0	96	36	22	15	26	1.94
32831407--32831518	50	2.2	49	77	3	116	37	22	13	26	1.91
32841155--32841187	12	2.8	12	86	13	50	66	0	33	0	0.92
32848760--32848817	21	2.8	21	86	5	82	32	24	17	25	1.96
32849508--32849588	25	3.2	25	75	6	83	38	22	17	22	1.93
32849524--32849601	25	3.1	25	81	3	95	35	25	17	20	1.95
32855201--32855252	21	2.5	21	76	17	54	25	9	30	34	1.88
32865783--32865908	25	5.0	25	76	12	100	31	23	18	26	1.97
32865797--32865908	50	2.2	50	81	9	131	30	24	18	26	1.98
32865874--32865930	25	2.3	25	84	0	69	35	22	15	26	1.94
32874260--32874316	26	2.2	26	87	0	78	29	17	19	33	1.95
32874400--32874456	21	2.7	21	94	0	96	50	12	12	24	1.74
32874453--32874477	13	1.9	13	100	0	50	40	8	24	28	1.83
32875353--32875399	17	2.7	17	83	3	58	51	12	14	21	1.76
32883515--32883596	43	1.9	43	97	0	155	30	20	21	26	1.98
32891594--32891646	26	2.0	26	85	0	70	35	20	13	30	1.91
32895446--32895482	18	2.0	19	89	5	58	29	5	10	54	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32904235--32904279	19	2.4	19	81	7	56	40	0	2	57	1.11
32904207--32904278	31	2.4	30	82	13	85	37	0	4	58	1.18
32906643--32906682	21	1.9	21	89	0	62	42	10	17	30	1.82
32907849--32907886	6	6.3	6	84	9	51	21	0	0	78	0.74
32907854--32907918	17	3.8	16	73	18	60	21	3	0	75	0.94
32908685--32908870	102	1.8	102	85	6	261	35	13	24	25	1.93
32909390--32909415	5	5.2	5	100	0	52	23	0	0	76	0.78
32909398--32909478	31	2.6	31	80	14	96	37	0	2	60	1.10
32909435--32909479	19	2.4	19	81	7	56	40	0	2	57	1.11
32910275--32910322	21	2.2	21	85	10	62	16	6	2	75	1.11
32912095--32912125	14	2.1	15	94	5	55	64	3	32	0	1.09
32921047--32921085	18	2.2	18	95	0	69	23	30	7	38	1.83
32927361--32927398	19	2.0	19	85	10	51	60	2	18	18	1.48
32928174--32928227	23	2.3	23	84	9	65	61	7	3	27	1.40
32928429--32928468	18	2.2	18	86	8	55	75	7	2	15	1.14
32928462--32928504	22	2.0	23	86	9	63	67	6	9	16	1.40
32928715--32928803	15	6.3	14	77	21	64	70	3	4	21	1.19
32928669--32928766	45	2.2	45	78	14	105	67	5	4	23	1.28
32928774--32928803	4	7.2	4	92	7	51	76	0	0	23	0.78
32928863--32928905	16	2.8	16	82	3	52	74	4	4	16	1.16
32929625--32930110	45	10.8	45	84	2	555	26	16	25	30	1.97
32929625--32930110	135	3.6	135	85	3	622	26	16	25	30	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32930148--32930618	49	9.6	50	72	10	204	19	22	16	42	1.89
32930189--32930370	98	1.9	98	83	0	238	20	23	15	41	1.90
32930244--32930625	98	3.9	97	75	8	328	20	22	15	41	1.90
32930200--32930626	146	2.9	147	78	4	425	20	22	15	40	1.90
32938794--32938828	12	2.9	12	86	0	52	25	11	20	42	1.85
32942429--32942457	14	2.0	15	93	6	51	65	13	6	13	1.45
32943342--32943371	15	2.0	15	100	0	60	66	13	6	13	1.43
32944272--32944301	15	2.0	15	100	0	60	66	13	6	13	1.43
32940637--32953150	929	13.6	929	92	2	19978	39	17	14	29	1.89
32945201--32945230	15	2.0	15	100	0	60	66	13	6	13	1.43
32947045--32947074	15	2.0	15	100	0	60	66	13	6	13	1.43
32948887--32948916	15	2.0	15	100	0	60	66	13	6	13	1.43
32950730--32950759	15	2.0	15	100	0	60	66	13	6	13	1.43
32951661--32951686	13	2.0	13	100	0	52	69	7	7	15	1.35
32952596--32952621	13	2.0	13	100	0	52	69	7	7	15	1.35
32953877--32953953	37	2.1	37	92	0	127	31	20	15	32	1.94
32954584--32954641	26	2.2	27	87	3	82	22	13	13	50	1.77
32962440--32962493	28	1.9	28	100	0	108	25	31	12	29	1.93
32962470--32962566	36	2.7	36	88	0	149	24	27	14	32	1.94
32974832--32975315	262	1.8	262	95	0	887	35	14	11	38	1.83
32981969--32982096	64	2.0	64	98	0	247	23	30	12	33	1.92
32996069--32996115	22	2.1	22	92	0	76	40	4	17	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
32996110--32996196	30	2.9	30	72	8	77	35	8	22	33	1.84
32997542--32997665	46	2.7	46	79	0	140	23	20	21	34	1.96
32997746--32999232	123	11.8	122	75	10	825	22	19	17	39	1.92
32998099--32998369	76	3.6	76	74	5	208	22	18	17	42	1.90
32998259--32999232	124	7.9	124	83	1	1168	22	19	18	39	1.92
32998268--32999232	247	3.9	246	84	2	1193	22	20	18	39	1.92
32997746--32999232	371	3.9	369	77	7	1331	22	19	17	39	1.92
32999131--32999309	75	2.4	76	87	1	261	22	18	18	39	1.93
32999551--32999785	97	2.4	97	84	0	299	20	28	16	34	1.95
32999551--32999814	49	5.4	49	74	1	235	20	28	16	34	1.95
33000503--33000533	16	2.0	15	93	6	53	0	16	0	83	0.64
33000503--33000549	21	2.3	20	82	10	60	0	19	0	80	0.70
33000509--33000549	16	2.6	16	81	14	50	0	19	0	80	0.71
33000503--33000548	5	9.2	5	80	15	51	0	19	0	80	0.71
33022276--33022434	25	6.3	25	81	0	156	33	26	17	22	1.96
33022276--33022434	75	2.1	75	86	1	219	33	26	17	22	1.96
33035132--33035249	25	4.7	25	79	2	94	35	22	16	26	1.94
33035207--33035254	25	1.9	25	95	0	87	39	20	16	22	1.92
33043177--33043260	38	2.3	38	79	10	102	30	25	13	30	1.93
33046594--33046651	26	2.2	26	93	0	98	31	22	17	29	1.96
33047747--33047779	13	2.8	12	90	9	50	72	12	0	15	1.12
33052677--33052724	24	2.0	25	84	12	64	70	4	8	16	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33060855--33060961	34	3.2	34	80	6	103	39	19	21	19	1.93
33060902--33060961	7	8.9	7	80	7	61	36	23	23	16	1.94
33060904--33060976	27	2.7	27	85	4	94	38	21	21	17	1.93
33060923--33060990	20	3.5	20	76	11	70	33	23	25	17	1.96
33073739--33073792	26	2.1	26	85	0	72	35	24	14	25	1.94
33094952--33094990	5	8.2	5	86	8	55	64	0	0	35	0.94
33104640--33104697	21	2.8	20	73	17	55	68	8	1	20	1.25
33104639--33104696	25	2.2	26	81	6	64	68	8	1	20	1.25
33104709--33104766	15	3.9	15	86	0	71	68	5	1	24	1.19
33104936--33104977	15	2.6	17	81	11	52	69	4	7	19	1.31

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135