genome.fa.s10.2.7.7.80.10.50.1000.109.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  109  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37268634--37268693	24	2.5	24	88	0	84	30	25	21	23	1.99
37272568--37272626	23	2.6	23	86	7	77	13	28	20	37	1.91
37273711--37273735	12	2.1	12	100	0	50	32	28	8	32	1.86
37279519--37279611	30	3.1	30	82	3	116	32	2	26	38	1.69
37280840--37280870	7	4.4	7	91	0	53	77	0	9	12	0.99
37285572--37285616	21	2.1	22	83	4	56	26	0	6	66	1.16
37285615--37285668	4	14.0	4	77	14	60	74	0	3	22	0.98
37286219--37286514	79	3.8	78	76	9	262	27	14	25	33	1.95
37286242--37286514	118	2.3	118	81	5	327	26	15	24	32	1.95
37286219--37286514	39	7.5	40	75	6	255	27	14	25	33	1.95
37298081--37298110	15	1.9	16	93	6	53	66	16	0	16	1.25
37300307--37300406	23	4.3	23	78	12	80	10	30	22	38	1.86
37300327--37300410	23	3.6	23	80	10	91	11	28	21	38	1.89
37300326--37300434	48	2.3	48	81	7	123	11	31	20	36	1.89
37301453--37301502	4	13.0	4	76	16	52	74	0	4	22	0.99
37301453--37301501	19	2.3	20	83	16	64	73	0	4	22	1.00
37302510--37302572	17	3.7	17	71	16	51	53	1	3	41	1.26
37302497--37302584	32	2.7	32	78	19	92	54	1	3	40	1.24
37303023--37303123	10	10.5	10	70	25	58	67	0	0	31	0.98
37303025--37303123	9	11.4	9	72	20	70	67	0	1	31	0.97
37303025--37303123	28	3.4	29	75	17	82	67	0	1	31	0.97
37303307--37303343	19	2.0	19	89	5	58	27	8	2	62	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37303311--37303467	19	8.3	19	68	16	67	33	5	0	60	1.25
37303396--37303479	19	4.5	19	75	13	84	32	3	0	64	1.11
37303396--37303479	9	9.0	9	74	17	73	32	3	0	64	1.11
37303464--37303494	15	2.1	15	93	0	53	22	0	0	77	0.77
37307696--37307852	59	2.7	59	82	0	170	22	17	13	46	1.83
37308029--37308217	31	6.3	30	71	13	113	48	12	15	23	1.79
37308080--37308217	31	4.5	31	78	8	133	48	10	15	26	1.76
37308025--37308217	89	2.1	91	84	3	248	47	12	15	24	1.80
37312608--37312687	37	2.2	37	88	0	115	33	12	15	38	1.84
37313092--37313121	3	10.0	3	100	0	60	66	0	0	33	0.92
37315631--37315974	155	2.2	155	100	0	688	36	10	19	34	1.86
37319392--37319707	45	7.0	45	76	5	289	46	16	5	31	1.70
37319392--37319700	90	3.4	90	80	2	352	46	15	5	32	1.70
37319392--37319704	135	2.3	135	83	3	380	46	15	5	32	1.70
37321703--37321755	24	2.4	21	74	17	61	22	3	47	26	1.68
37331085--37331193	26	4.2	26	82	4	121	28	16	29	25	1.97
37331085--37331193	52	2.1	52	84	0	137	28	16	29	25	1.97
37331137--37331202	26	2.5	26	87	0	78	31	13	25	28	1.94
37334118--37334188	33	2.2	33	84	0	88	42	21	8	28	1.82
37334064--37334308	90	2.9	85	80	10	263	45	16	6	31	1.72
37334151--37334360	45	4.6	44	79	10	217	45	17	6	30	1.74
37334151--37334343	90	2.1	92	86	2	273	45	16	6	31	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37336922--37336992	31	2.2	32	76	14	76	50	0	0	49	1.00
37337712--37337744	14	2.4	14	90	5	50	42	12	0	45	1.41
37338117--37338161	19	2.3	20	85	11	58	55	6	0	37	1.26
37338172--37338208	10	3.6	10	92	3	56	67	5	0	27	1.12
37338172--37338219	10	4.7	10	84	10	53	68	4	0	27	1.07
37339869--37339897	3	9.7	3	100	0	58	68	0	0	31	0.89
37339997--37340039	18	2.5	17	82	14	52	41	0	9	48	1.35
37340006--37340062	20	3.0	20	84	7	73	38	0	12	49	1.41
37340002--37340071	19	3.7	20	83	7	65	37	0	10	52	1.35
37341414--37341461	21	2.2	21	82	10	53	33	6	0	60	1.22
37342851--37342894	19	2.4	18	80	3	52	56	2	2	38	1.24
37342897--37342960	8	8.0	8	72	17	53	68	1	1	28	1.07
37342897--37342946	26	2.0	25	88	11	75	66	2	0	32	1.03
37342880--37342959	17	4.9	16	73	15	58	67	1	1	30	1.06
37359054--37359078	5	5.0	5	100	0	50	20	20	40	20	1.92
37361853--37361902	25	2.0	25	84	0	64	52	10	8	30	1.64
37364541--37364565	8	3.1	8	100	0	50	12	0	40	48	1.40
37365067--37365107	20	2.0	20	95	0	73	43	4	12	39	1.63
37368226--37368425	79	2.5	79	90	0	301	21	21	27	29	1.99
37369161--37369277	58	2.0	58	93	0	198	26	19	22	31	1.98
37371841--37371874	17	1.9	18	88	5	52	29	8	5	55	1.54
37372039--37372095	20	2.9	20	73	2	53	66	7	5	21	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37373293--37373328	16	2.1	16	90	10	54	55	0	0	44	0.99
37373384--37373412	6	4.8	6	100	0	58	13	34	0	51	1.42
37373502--37373547	13	3.4	13	80	11	56	23	28	2	45	1.65
37373493--37373550	28	2.1	28	90	0	89	25	24	1	48	1.61
37373487--37373542	15	3.9	15	79	11	64	28	19	3	48	1.66
37375261--37375331	28	2.5	29	75	6	74	46	1	2	49	1.25
37376480--37376514	18	1.9	18	88	0	52	31	20	20	28	1.97
37376738--37376788	24	2.1	24	85	7	68	31	5	5	56	1.47
37386483--37386612	23	5.9	23	67	18	87	44	21	22	11	1.84
37386489--37386563	39	1.9	39	86	0	105	44	21	21	13	1.86
37386550--37386606	25	2.4	23	77	16	62	43	22	24	8	1.81
37388784--37388818	15	2.2	16	90	5	54	71	2	0	25	1.00
37392696--37392735	18	2.2	18	86	0	53	27	7	0	65	1.20
37397546--37397583	20	2.0	20	89	5	60	47	0	10	42	1.38
37401367--37401431	24	2.7	24	92	0	103	49	12	23	15	1.78
37415300--37415348	22	2.5	18	77	22	62	40	4	20	34	1.71
37415308--37415353	22	2.1	22	100	0	92	45	4	17	32	1.68
37415504--37415536	6	5.5	6	92	0	57	48	0	30	21	1.50
37420782--37420830	22	2.5	18	77	22	62	40	4	20	34	1.71
37420790--37420835	22	2.1	22	100	0	92	45	4	17	32	1.68
37420986--37421018	6	5.5	6	92	0	57	48	0	30	21	1.50
37421120--37421220	38	2.6	40	71	10	100	21	19	28	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37424746--37424911	40	4.2	40	83	1	208	27	24	18	29	1.98
37424749--37424907	80	2.0	80	88	0	237	28	25	17	28	1.98
37427345--37427393	16	2.9	18	77	20	52	51	0	0	48	1.00
37428411--37428447	17	2.2	18	85	9	51	54	0	24	21	1.45
37429782--37429833	3	17.3	3	100	0	104	65	0	0	34	0.93
37431386--37431423	20	1.9	20	88	0	58	42	28	5	23	1.76
37434969--37434998	5	6.0	5	92	0	51	3	0	20	76	0.92
37438700--37439062	41	8.9	42	83	5	451	25	19	26	28	1.98
37438700--37439061	161	2.2	163	82	9	452	25	19	26	29	1.98
37439205--37439331	49	2.6	49	80	0	155	24	29	12	33	1.92
37439336--37439730	49	8.0	49	74	8	273	17	31	15	34	1.92
37439270--37439715	148	3.0	148	79	5	415	19	31	15	33	1.92
37439425--37439730	99	3.1	97	78	7	321	18	32	15	33	1.92
37440153--37440483	113	2.9	113	85	1	450	38	11	19	29	1.87
37443878--37443931	24	2.3	24	96	3	101	24	24	24	27	2.00
37445032--37445268	51	4.6	51	87	3	334	33	14	23	28	1.94
37451840--37451996	51	3.1	50	87	2	219	30	15	22	30	1.95
37453877--37453993	62	1.9	59	87	5	171	49	3	3	43	1.36
37462220--37462253	2	17.0	2	100	0	68	50	0	0	50	1.00
37462510--37462561	21	2.4	22	80	9	61	55	17	0	26	1.42
37466355--37466391	14	2.7	14	87	4	58	78	13	0	8	0.96
37472185--37472240	21	2.7	21	85	0	76	25	12	28	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37472185--37472249	21	3.1	22	78	12	75	23	13	27	35	1.93
37480265--37480311	24	2.0	24	87	8	69	51	6	36	6	1.53
37484522--37484569	21	2.2	21	92	3	78	45	31	4	18	1.68
37484657--37484752	20	4.7	20	73	7	68	17	1	34	46	1.55
37499234--37499357	62	2.0	62	93	3	214	37	4	16	41	1.69
37500549--37500584	6	6.3	6	93	6	58	66	16	0	16	1.25
37501606--37501643	19	2.1	19	85	14	53	39	2	2	55	1.28
37505751--37505901	63	2.5	59	79	13	141	22	12	8	56	1.63
37505813--37505925	59	1.9	59	80	5	131	26	13	7	53	1.65
37509526--37509563	20	1.9	20	84	10	51	31	0	2	65	1.06

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135