genome.fa.s10.2.7.7.80.10.50.1000.47.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  47  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16951772--16951848	37	2.0	38	82	9	95	54	0	2	42	1.14
16951769--16951859	11	7.9	11	72	12	58	54	1	2	41	1.19
16951760--16951848	17	5.4	16	83	14	110	52	0	2	44	1.13
16953724--16953768	21	2.2	20	84	4	54	31	17	4	46	1.68
16957805--16957894	43	2.1	43	89	4	137	50	3	5	41	1.42
16958221--16958392	89	1.9	88	84	1	227	37	15	6	40	1.75
16958253--16958461	89	2.3	91	81	3	219	38	16	9	36	1.80
16958584--16958616	11	3.2	11	83	16	52	24	0	0	75	0.80
16964782--16965225	195	2.3	195	82	5	499	27	20	26	25	1.99
16971538--16971639	49	2.1	49	98	0	195	55	6	6	30	1.52
16980024--16980133	17	6.3	17	75	6	103	44	0	1	53	1.11
16980024--16980121	36	2.8	35	93	4	171	43	0	2	54	1.12
16980136--16980179	15	3.1	15	83	6	56	54	18	6	20	1.66
16980275--16980313	20	2.0	20	100	0	78	38	41	5	15	1.69
16980809--16980850	2	21.0	2	100	0	84	50	0	0	50	1.00
16981804--16982087	30	9.6	29	74	11	188	35	27	2	34	1.69
16981804--16982175	59	6.3	60	77	7	273	34	26	2	36	1.71
16981818--16982176	118	3.0	114	79	7	328	34	26	2	35	1.70
16982022--16982195	58	3.0	55	78	13	163	33	24	4	37	1.76
16981985--16982202	59	3.7	57	77	9	165	35	24	3	36	1.73
16988239--16988366	65	2.0	65	93	0	220	31	10	28	29	1.91
17000306--17000360	16	3.4	16	87	0	74	43	7	21	27	1.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17000535--17000576	11	3.8	11	78	12	50	57	0	0	42	0.99
17010775--17010821	2	23.5	2	100	0	94	48	0	0	51	1.00
17013522--17013586	29	2.2	30	91	2	105	55	13	7	23	1.64
17014322--17014370	20	2.4	21	73	10	57	65	0	0	34	0.93
17014326--17014383	17	3.3	17	79	11	55	68	0	0	31	0.89
17014306--17014366	29	2.1	29	82	11	72	62	0	0	37	0.96
17014701--17014754	21	2.6	21	72	13	58	35	3	1	59	1.26
17014690--17014765	31	2.5	30	73	12	75	31	3	2	61	1.28
17018354--17018401	25	2.0	25	83	4	62	31	41	2	25	1.67
17019665--17019706	21	2.1	19	86	8	57	42	0	7	50	1.30
17022227--17022306	29	2.8	29	83	12	94	36	5	23	35	1.77
17022330--17022831	29	17.5	28	75	11	317	37	2	23	36	1.69
17022336--17022490	80	1.9	79	87	6	224	36	0	24	38	1.61
17022365--17022467	51	2.0	50	86	1	143	34	0	26	37	1.63
17022440--17022832	59	6.8	57	77	7	301	38	3	22	35	1.70
17022415--17022794	88	4.3	86	74	10	270	38	2	23	35	1.69
17022415--17022830	117	3.6	113	82	6	433	37	2	23	35	1.70
17024400--17024459	27	2.2	28	87	3	86	31	3	25	40	1.72
17024752--17024879	30	4.3	30	82	4	143	38	22	4	34	1.75
17029220--17029335	56	2.1	56	98	0	223	31	14	24	29	1.95
17036458--17036556	50	2.0	50	83	0	126	39	18	23	19	1.92
17036616--17036709	40	2.4	39	82	5	100	30	27	14	26	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17037906--17037964	26	2.2	26	84	6	73	32	3	27	37	1.73
17038247--17038375	30	4.3	29	81	8	127	37	23	3	34	1.73
17039181--17039230	11	4.8	11	78	11	52	40	0	0	60	0.97
17039657--17039700	21	2.2	20	91	4	70	15	4	25	54	1.60
17040910--17040972	28	2.2	28	97	2	117	23	0	23	52	1.47
17042586--17042642	21	2.8	20	84	7	69	19	3	0	77	0.92
17042609--17042644	19	1.9	18	88	5	54	25	0	0	75	0.81
17045343--17045659	157	2.0	158	87	4	453	38	20	11	30	1.87
17051457--17051494	16	2.3	17	86	4	51	47	5	2	44	1.39
17066736--17066779	19	2.3	20	80	11	56	31	2	0	65	1.05
17066761--17066821	28	2.1	28	82	14	70	39	4	3	52	1.39
17066847--17066875	2	14.5	2	100	0	58	48	0	0	51	1.00
17067022--17067079	7	8.4	7	74	24	52	37	0	0	62	0.96
17067022--17067063	15	2.8	15	82	10	50	40	0	0	59	0.97
17067017--17067107	27	3.3	27	80	14	80	36	1	0	62	1.02
17067036--17067107	26	2.7	26	83	10	76	36	1	0	62	1.04
17067469--17067509	22	1.9	21	85	14	57	56	0	4	39	1.21
17072706--17072766	30	2.1	30	81	6	72	34	1	1	62	1.15
17072770--17072805	18	1.9	19	88	5	56	36	0	2	61	1.11
17078218--17078250	17	1.9	17	88	11	50	66	30	3	0	1.06
17089560--17089627	33	2.1	33	94	0	118	44	11	11	32	1.77
17090664--17090689	6	4.3	6	100	0	52	50	19	0	30	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17096430--17096501	11	7.0	11	77	17	75	1	2	23	72	1.06
17096387--17096520	20	6.6	19	74	19	94	2	4	19	73	1.14
17096403--17096519	32	3.8	32	77	14	102	3	3	19	73	1.12
17096422--17096479	17	3.2	17	79	13	62	3	1	18	75	1.03
17096403--17096485	43	2.0	41	85	4	112	2	3	19	74	1.07
17096430--17096498	3	24.7	3	75	11	58	1	2	23	72	1.06
17096690--17096734	14	3.0	16	71	15	51	24	2	17	55	1.53
17100298--17100336	18	2.2	18	86	13	55	43	10	0	46	1.37
17101869--17101914	24	1.9	24	86	0	65	23	0	19	56	1.42
17112078--17112116	21	1.9	21	84	5	53	56	0	7	35	1.28
17112475--17112500	11	2.4	11	100	0	52	76	7	0	15	0.99
17115777--17115816	19	2.0	20	85	4	55	62	0	7	30	1.23
17116723--17116760	5	7.6	5	100	0	76	36	0	0	63	0.95
17117184--17117217	3	11.3	3	93	0	59	32	0	35	32	1.58
17117544--17117610	33	2.1	33	97	2	127	46	23	11	17	1.82
17118604--17118701	43	2.3	43	85	0	133	34	10	11	43	1.74
17119140--17119173	6	5.7	6	96	0	59	47	14	35	2	1.60
17124938--17124983	24	1.9	24	100	0	92	17	15	21	45	1.85
17134167--17134200	17	2.0	17	88	11	52	44	0	0	55	0.99
17136409--17136508	43	2.3	43	84	0	128	30	11	15	44	1.80
17140057--17140176	46	2.6	46	88	2	170	11	25	20	41	1.86
17140088--17140224	69	2.0	66	84	11	177	12	23	21	43	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17140077--17140224	23	6.4	23	80	9	151	12	24	21	41	1.87
17147477--17147510	17	2.0	17	88	0	50	35	0	11	52	1.38
17147498--17147560	17	3.8	16	79	6	63	42	0	4	52	1.22
17147500--17147582	33	2.5	33	82	2	94	40	2	6	50	1.40
17148253--17148566	30	10.4	30	87	2	398	37	22	2	36	1.70
17148550--17148747	58	3.3	58	70	11	168	28	27	5	38	1.79
17160524--17162513	213	9.3	208	89	4	2406	34	16	18	30	1.94
17160524--17162557	358	5.7	358	97	0	3762	34	16	18	30	1.94
17162849--17162882	17	2.0	17	88	0	50	35	0	11	52	1.38
17162870--17162932	17	3.8	16	79	6	63	42	0	4	52	1.22
17162872--17162954	33	2.5	33	82	2	94	40	2	6	50	1.40
17163718--17163749	16	2.0	16	93	0	55	59	3	0	37	1.13
17164842--17165015	30	5.8	30	82	6	203	36	22	3	37	1.71
17164842--17165015	90	1.9	88	84	7	226	36	22	3	37	1.71
17164988--17165190	59	3.4	58	73	7	185	29	29	4	36	1.77
17166641--17166687	24	2.0	24	100	0	94	17	17	19	46	1.84
17167505--17167628	64	1.9	64	91	3	205	11	41	13	33	1.80
17168505--17168539	15	2.3	15	90	9	54	42	0	0	57	0.99
17180171--17180218	21	2.3	21	89	3	71	39	25	18	16	1.91
17182722--17182762	3	13.7	3	100	0	82	0	65	0	34	0.93
17184697--17184735	17	2.3	17	86	8	53	46	23	12	17	1.83
17186490--17186523	17	2.0	17	100	0	68	23	17	23	35	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17189112--17189150	18	2.2	18	86	4	53	33	10	5	51	1.58
17191473--17191505	12	2.5	14	85	14	52	45	3	0	51	1.16
17191590--17191652	26	2.4	27	72	15	62	42	0	1	55	1.09
17192069--17192129	25	2.4	25	86	5	77	14	3	9	72	1.24
17193946--17194048	23	4.4	23	81	3	100	41	15	9	33	1.80
17195462--17195544	30	2.8	30	94	3	141	42	0	32	25	1.55
17195199--17195512	167	1.9	168	84	8	435	39	0	35	24	1.60
17195186--17195536	167	2.1	167	80	8	419	39	0	34	25	1.60
17196724--17196784	18	3.5	17	79	14	63	29	1	4	63	1.24
17196722--17196782	9	6.8	9	73	14	54	29	1	4	63	1.24

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135