genome.fa.s10.2.7.7.80.10.50.1000.119.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  119  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39712953--39713206	117	2.2	117	83	2	332	12	3	57	25	1.52
39713127--39713302	63	2.7	66	86	5	234	11	2	58	26	1.47
39713226--39713447	96	2.4	92	81	9	256	12	5	55	26	1.57
39713412--39713554	18	8.3	18	66	9	55	13	7	55	23	1.64
39715495--39715545	23	2.2	22	80	10	57	64	1	0	33	1.05
39719000--39719032	16	2.0	17	88	5	50	63	0	0	36	0.95
39720550--39720587	20	1.9	20	89	10	60	31	42	7	18	1.79
39720759--39720792	16	2.1	16	100	0	68	17	17	5	58	1.57
39720762--39720799	16	2.3	16	90	4	58	21	15	7	55	1.66
39721770--39721881	57	2.0	57	92	3	190	37	18	20	23	1.94
39722282--39722318	19	1.9	19	88	0	56	32	5	0	62	1.18
39723956--39723982	3	9.0	3	100	0	54	33	0	0	66	0.92
39724989--39725052	31	2.1	31	88	5	94	43	10	4	40	1.61
39728538--39728571	17	1.9	18	94	5	61	47	0	0	52	1.00
39736006--39736055	21	2.4	21	80	3	57	54	4	0	42	1.19
39736012--39736050	21	1.9	21	89	5	62	51	2	0	46	1.14
39736012--39736062	21	2.5	21	84	9	61	54	3	0	41	1.19
39738391--39738420	14	2.1	14	100	0	60	36	36	6	20	1.79
39738576--39738610	2	17.5	2	100	0	70	51	0	48	0	1.00
39740304--39740364	16	3.8	16	84	0	77	44	1	24	29	1.63
39740302--39740373	16	4.5	16	82	3	65	40	4	26	29	1.75
39740302--39740373	32	2.2	32	77	0	81	40	4	26	29	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39740526--39740645	57	2.1	58	90	4	188	52	0	0	46	1.06
39740771--39740824	22	2.7	19	80	11	56	72	3	5	18	1.20
39746624--39746657	17	2.0	18	88	11	54	52	17	0	29	1.45
39749912--39749954	22	1.9	23	85	4	61	30	2	11	55	1.48
39772592--39772652	31	2.0	31	90	0	95	37	11	6	44	1.67
39777137--39777161	1	25.0	1	100	0	50	0	0	100	0	0.00
39778031--39778089	17	3.4	16	76	17	55	30	0	8	61	1.26
39778216--39778248	17	2.0	17	94	5	59	36	3	0	60	1.12
39779070--39779145	30	2.6	29	76	14	75	38	2	1	57	1.21
39788038--39788135	40	2.5	40	88	3	126	38	16	21	23	1.92
39788159--39788333	41	4.3	40	77	7	172	26	24	23	25	2.00
39788566--39788603	17	2.2	17	95	0	67	39	26	0	34	1.57
39789480--39789522	21	2.1	20	83	12	52	41	2	0	55	1.12
39789771--39789855	41	2.1	41	88	0	125	41	15	20	23	1.90
39789843--39789960	42	2.8	42	77	7	123	29	20	24	25	1.99
39791749--39791879	58	2.2	58	87	1	190	31	0	35	32	1.64
39791862--39792121	30	8.7	31	80	9	265	36	2	21	40	1.66
39791862--39792117	90	2.9	90	85	4	340	36	2	20	40	1.66
39793190--39793221	9	3.6	9	95	0	55	34	0	6	59	1.23
39793899--39793949	6	8.0	6	79	18	50	33	0	3	62	1.13
39793922--39793997	11	6.4	12	74	18	52	48	0	2	48	1.15
39793920--39793998	6	13.2	6	78	15	74	49	0	2	48	1.14
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39793934--39793993	31	1.9	31	90	6	95	51	0	3	45	1.17
39793967--39794008	17	2.5	17	88	7	59	57	2	2	38	1.25
39794318--39794443	38	3.3	37	71	14	121	32	16	16	34	1.92
39794295--39795464	76	15.8	76	86	6	1503	32	18	16	33	1.93
39794377--39794570	63	3.0	64	91	2	327	32	17	15	33	1.92
39794520--39795335	38	21.5	37	63	17	166	31	18	16	33	1.93
39795315--39795448	69	1.9	69	90	0	214	30	20	13	35	1.91
39807216--39807352	58	2.3	58	86	1	184	32	2	33	31	1.70
39807335--39807619	30	9.6	29	84	10	328	36	3	21	37	1.72
39808695--39808726	9	3.6	9	95	0	55	34	0	6	59	1.23
39809394--39809442	6	7.5	6	84	15	62	28	0	4	67	1.09
39809415--39809503	6	15.2	6	79	17	71	49	0	2	48	1.13
39809424--39809496	36	2.0	37	83	2	94	50	0	2	46	1.15
39809432--39809503	17	4.5	16	83	11	94	54	0	2	43	1.15
39809467--39809521	27	2.0	27	82	0	65	52	7	1	38	1.40
39811343--39811418	8	8.6	8	74	17	62	60	1	1	36	1.13
39811255--39811725	121	3.9	121	94	1	806	52	5	1	40	1.33
39811595--39811633	19	2.0	21	90	10	64	61	0	0	38	0.96
39811603--39811813	92	2.3	91	93	3	361	51	5	1	41	1.35
39811857--39811882	8	3.2	8	100	0	52	53	0	0	46	1.00
39811708--39811944	123	1.9	121	87	6	345	49	6	1	42	1.37
39813942--39814235	29	10.2	28	72	16	163	36	2	25	35	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39813899--39814124	58	3.9	58	88	5	316	35	4	29	30	1.78
39813897--39814149	58	4.4	57	87	5	289	35	4	28	31	1.78
39814101--39814264	29	5.6	29	83	3	186	40	2	19	37	1.65
39814107--39814264	59	2.7	59	88	1	212	41	2	18	37	1.64
39814135--39814279	59	2.5	59	86	2	148	40	4	19	35	1.73
39815918--39815986	25	2.8	24	77	16	70	15	14	52	17	1.75
39816171--39816296	17	7.6	17	80	9	127	52	1	1	44	1.20
39816170--39816296	11	11.5	11	68	19	77	51	1	1	44	1.20
39816165--39816296	66	2.0	65	82	4	158	51	1	1	45	1.19
39816716--39816753	20	1.9	20	94	0	67	18	13	26	42	1.87
39816686--39817472	100	7.9	100	85	4	996	14	25	20	39	1.91
39816691--39817468	300	2.6	300	88	3	1104	14	25	20	39	1.91
39829036--39829377	58	5.9	57	85	3	400	36	3	27	31	1.74
39829065--39829463	29	13.8	29	71	16	177	38	3	25	33	1.71
39829070--39829377	116	2.7	116	89	0	447	37	2	26	32	1.72
39829303--39829516	29	7.4	29	80	9	206	41	1	19	37	1.62
39829367--39829516	29	5.2	29	87	2	212	42	2	16	39	1.62
39831103--39831157	25	2.2	26	80	9	69	18	10	50	20	1.76
39831350--39831469	17	7.2	17	77	9	104	51	3	1	43	1.28
39831364--39831469	6	19.0	6	65	18	59	50	2	1	44	1.27
39831343--39831469	11	11.5	11	65	19	59	51	3	1	43	1.27
39836450--39836482	15	2.2	15	94	0	57	24	0	27	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39836550--39836728	43	4.2	43	81	7	202	24	18	27	29	1.98
39836550--39836728	86	2.1	86	84	2	234	24	18	27	29	1.98
39836748--39836777	15	2.0	15	93	0	51	13	16	26	43	1.85
39852364--39852421	21	2.8	21	69	10	55	17	0	31	51	1.45
39853009--39853038	13	2.3	13	94	0	51	26	30	16	26	1.97
39860059--39860120	29	2.1	29	96	0	115	19	24	25	30	1.98
39860026--39860154	62	2.1	63	82	1	152	22	21	24	31	1.99
39860144--39860318	61	2.8	61	84	6	172	30	24	20	25	1.99
39860108--39860291	94	2.0	94	82	0	224	28	23	21	25	1.99
39860269--39860324	17	3.4	17	71	14	53	28	17	23	30	1.97
39860046--39860331	33	8.9	33	79	7	248	27	22	22	27	1.99
39866827--39866902	35	2.2	35	95	0	134	23	11	22	42	1.87
39870485--39870526	21	2.0	21	85	0	57	28	4	23	42	1.74
39872139--39872176	18	2.1	18	85	9	51	26	2	21	50	1.62
39873625--39873692	17	4.1	17	78	1	75	44	2	1	51	1.25
39875299--39875603	162	1.9	163	86	3	436	27	16	11	43	1.83
39875677--39875767	29	3.2	27	75	20	96	37	27	2	32	1.69
39875706--39875805	30	3.4	29	70	25	86	36	27	2	35	1.68
39875674--39875892	58	3.8	58	81	10	261	34	28	2	34	1.72
39875673--39875897	115	2.0	112	80	9	240	33	29	2	33	1.72
39875974--39876018	15	2.9	16	78	15	51	24	6	6	62	1.44
39890650--39891387	76	9.8	76	93	1	1148	33	15	17	33	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39890650--39891372	150	4.8	151	92	1	1148	33	15	17	33	1.92
39892293--39892360	17	4.1	17	78	1	75	44	2	1	51	1.25
39893837--39894141	162	1.9	163	86	3	436	27	16	11	43	1.83
39894212--39894345	29	4.6	30	70	20	97	35	28	2	34	1.70
39894212--39894410	58	3.4	58	84	5	267	33	28	3	34	1.73
39894212--39894438	58	3.9	57	82	5	242	33	29	3	33	1.75
39909346--39909380	16	2.2	16	89	0	52	40	2	2	54	1.30
39912645--39912681	18	2.1	18	100	0	74	21	10	32	35	1.88
39912696--39912772	31	2.5	31	100	0	154	25	11	12	49	1.75
39913189--39913224	3	12.0	3	100	0	72	66	0	0	33	0.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135