genome.fa.s10.2.7.7.80.10.50.1000.31.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  31  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12342406--12342468	23	2.7	23	97	0	117	19	15	22	42	1.88
12342417--12342491	34	2.2	33	90	2	96	20	17	22	40	1.92
12342427--12342498	34	2.2	33	94	2	126	19	15	20	44	1.86
12342904--12342967	29	2.1	30	83	11	78	34	18	10	35	1.86
12344487--12344522	18	1.9	18	88	5	54	47	0	0	52	1.00
12344804--12344948	10	14.5	10	67	17	52	29	4	4	62	1.33
12348089--12348131	20	2.2	20	87	8	61	13	11	18	55	1.68
12368936--12369015	31	2.7	27	73	19	70	43	13	10	32	1.77
12374176--12374200	11	2.3	11	100	0	50	16	0	8	76	1.02
12376446--12376474	15	1.9	15	100	0	58	34	24	13	27	1.93
12376296--12376638	173	2.0	173	94	0	596	41	15	14	27	1.87
12379090--12379145	20	2.5	22	81	13	62	30	0	3	66	1.09
12379596--12379635	9	4.4	9	84	12	55	25	0	2	72	0.97
12379769--12379850	28	2.9	29	77	12	89	30	3	2	63	1.24
12379838--12379886	21	2.4	20	83	16	57	18	2	2	77	0.96
12384458--12384495	16	2.3	17	86	4	51	7	26	2	63	1.35
12388980--12389031	10	5.3	9	80	15	59	55	0	5	38	1.24
12389613--12389659	18	2.4	18	86	10	58	61	2	0	36	1.08
12389647--12389682	11	3.0	13	84	15	51	66	5	0	27	1.13
12390608--12390646	17	2.2	18	86	4	53	33	0	7	58	1.26
12395678--12395705	13	2.2	13	100	0	56	42	14	0	42	1.45
12402622--12402749	58	2.2	58	88	5	188	47	0	1	50	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12405920--12405960	15	2.5	17	80	11	59	63	0	2	34	1.08
12406193--12406231	2	19.5	2	100	0	78	48	0	0	51	1.00
12410042--12410083	17	2.4	17	84	4	57	28	0	0	71	0.86
12410159--12410219	28	2.1	29	85	8	81	67	4	1	26	1.20
12413350--12413536	93	2.0	93	96	0	347	36	18	10	34	1.85
12417030--12417098	33	2.1	33	86	0	93	52	14	2	30	1.56
12428590--12428681	29	3.1	29	76	7	78	36	8	5	48	1.57
12428853--12428893	14	3.1	14	75	13	50	56	12	0	31	1.36
12438758--12438790	3	10.7	3	93	6	57	66	0	0	33	0.92
12446271--12446319	23	2.2	21	89	7	71	32	0	0	67	0.91
12446283--12446319	13	3.1	13	77	22	53	32	0	0	67	0.91
12446301--12446359	29	2.0	29	87	6	84	38	1	1	57	1.19
12457758--12457783	12	2.2	12	100	0	52	53	15	7	23	1.67
12466277--12466334	19	3.0	18	77	20	55	63	0	1	34	1.04
12466299--12466345	20	2.3	20	78	10	51	65	2	4	27	1.22
12468046--12468084	6	6.5	6	93	0	69	20	30	0	48	1.50
12468226--12468271	22	2.1	22	95	0	83	30	17	4	47	1.67
12470306--12470348	21	2.1	21	83	8	54	34	20	9	34	1.85
12476194--12476226	13	2.7	13	90	9	52	27	0	0	72	0.85
12477996--12478158	80	2.0	80	92	0	272	30	36	4	28	1.76
12478991--12479039	21	2.3	21	89	6	73	34	20	16	28	1.94
12484779--12484808	15	1.9	16	93	6	53	53	3	0	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12485723--12485774	26	2.0	26	85	10	72	36	13	9	40	1.77
12486212--12486307	47	2.1	47	80	5	106	23	5	14	56	1.59
12486701--12486731	2	15.0	2	93	6	53	48	0	3	48	1.17
12488813--12488898	31	2.9	30	84	5	102	34	8	12	44	1.72
12489033--12489091	29	2.0	30	86	3	84	47	16	8	27	1.76
12489710--12489750	18	2.2	18	91	4	64	73	0	2	24	0.96
12491414--12491492	37	2.1	37	81	13	90	36	2	5	55	1.35
12493121--12493180	6	10.3	6	72	13	54	50	1	1	46	1.21
12493094--12493170	17	4.5	17	73	1	64	42	1	5	50	1.32
12493935--12493964	15	2.0	15	100	0	60	60	0	6	33	1.23
12495115--12495415	58	5.2	58	78	9	229	33	29	2	34	1.72
12495173--12495415	29	8.4	28	70	15	154	33	30	2	34	1.69
12495165--12495387	58	3.8	59	82	6	258	35	28	1	34	1.68
12507589--12508192	201	3.0	201	91	1	960	36	21	22	19	1.95
12508573--12508648	17	4.5	17	80	3	82	43	1	3	51	1.28
12508599--12508658	6	10.3	6	75	13	63	50	1	0	48	1.11
12509415--12509444	15	2.0	15	100	0	60	60	0	6	33	1.23
12510634--12510971	29	11.6	29	71	16	184	33	30	3	32	1.75
12510585--12510825	87	2.8	86	74	16	210	33	29	2	34	1.71
12510598--12510943	58	6.0	58	80	9	343	32	30	2	34	1.72
12513509--12513550	17	2.4	18	84	11	61	66	0	2	30	1.04
12515012--12515267	23	11.3	23	79	9	285	39	22	24	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12515016--12515090	39	1.9	39	91	0	123	44	21	22	12	1.85
12515055--12515267	94	2.3	92	91	3	338	38	23	25	13	1.90
12515055--12515267	46	4.6	46	89	4	338	38	23	25	13	1.90
12516371--12516396	7	3.7	7	100	0	52	46	11	11	30	1.76
12524296--12524366	31	2.3	31	87	4	99	32	21	9	36	1.86
12531078--12531153	6	13.0	6	72	15	61	46	0	2	51	1.15
12531092--12531155	30	2.2	30	88	2	94	50	0	3	46	1.17
12531078--12531151	17	4.6	17	75	13	75	44	0	2	52	1.15
12531106--12531163	17	3.3	17	80	4	62	50	1	1	46	1.22
12532952--12533103	30	5.1	30	83	7	184	35	25	1	37	1.67
12532952--12533159	30	7.0	29	75	13	165	34	26	2	35	1.72
12534411--12534455	22	2.0	22	86	8	63	22	2	8	66	1.30
12544591--12544634	22	2.0	21	86	4	61	20	2	6	70	1.21
12545204--12545378	61	2.9	61	79	6	160	24	12	12	50	1.74
12545571--12545595	4	6.2	4	100	0	50	76	0	0	24	0.80
12555030--12555093	32	2.0	32	100	0	128	34	25	9	31	1.87
12558960--12559007	20	2.4	19	80	13	53	79	4	0	16	0.89
12558977--12559063	33	2.6	32	82	13	104	70	4	5	19	1.26
12559099--12559145	25	1.9	24	86	4	67	63	4	8	23	1.40
12559295--12559330	16	2.3	16	90	4	56	75	2	8	13	1.15
12561801--12562095	52	5.7	52	85	0	369	26	13	24	36	1.92
12574846--12574890	20	2.2	21	84	11	58	42	13	4	40	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12575478--12575512	12	2.8	13	86	8	54	54	22	2	20	1.58
12575470--12575554	43	2.0	44	83	6	111	52	18	7	21	1.68
12584442--12584469	14	2.0	14	100	0	56	35	14	21	28	1.92
12587733--12587758	5	5.2	5	100	0	52	80	0	0	19	0.71
12592940--12592978	20	2.0	20	85	9	55	53	10	0	35	1.35
12594156--12594203	19	2.5	20	80	6	64	50	0	0	50	1.00
12594409--12594434	7	3.7	7	100	0	52	42	0	15	42	1.47
12600875--12600944	32	2.2	33	82	7	81	28	4	7	60	1.43
12604734--12604781	22	2.2	22	88	3	71	62	4	8	25	1.41
12606263--12606302	17	2.2	19	86	13	57	2	15	0	82	0.77
12606600--12606920	160	2.0	162	93	1	556	44	16	13	25	1.84
12607257--12607311	17	3.5	17	70	27	57	58	3	0	38	1.16
12607255--12607311	30	1.9	29	92	3	96	56	3	0	40	1.17
12607426--12607473	15	3.3	14	79	5	51	62	6	2	29	1.31
12607434--12607477	15	3.0	15	80	3	54	61	4	0	34	1.16
12613483--12613525	20	2.1	22	87	12	65	48	4	6	39	1.51
12613916--12613944	5	6.0	5	92	8	51	62	0	37	0	0.96
12613913--12613945	15	2.4	14	85	14	50	66	0	33	0	0.92
12615062--12615106	22	2.0	24	86	8	67	60	0	8	31	1.28
12616420--12616464	19	2.4	19	81	7	56	37	0	2	60	1.09
12623998--12624044	20	2.4	20	82	3	60	31	6	0	61	1.21
12623998--12624039	19	2.2	19	86	4	57	30	7	0	61	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12624764--12624808	22	2.0	22	82	0	54	44	2	4	48	1.35
12625026--12625067	21	2.0	20	86	4	57	30	21	7	40	1.80
12627600--12627633	17	2.0	17	100	0	68	47	0	0	52	1.00
12628132--12628191	33	1.9	32	86	10	88	51	0	1	46	1.10
12630993--12631163	85	2.0	85	100	0	342	28	24	14	33	1.94
12632473--12632523	24	2.1	24	82	13	61	33	7	0	58	1.27
12632606--12632658	26	2.0	27	82	10	65	26	0	9	64	1.24
12632698--12632776	27	2.9	27	92	3	124	17	26	29	26	1.98
12637660--12637702	21	2.0	22	81	4	52	44	4	0	51	1.22
12638276--12638325	23	2.1	25	88	7	77	64	2	2	32	1.16

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135