genome.fa.s10.2.7.7.80.10.50.1000.33.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  33  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12849321--12849515	59	3.3	59	89	1	284	30	21	6	42	1.77
12849350--12849445	30	3.2	30	71	14	99	31	17	7	43	1.76
12849368--12849461	30	3.2	30	71	14	104	29	24	6	39	1.80
12849321--12849574	59	4.3	58	83	3	258	30	21	5	42	1.74
12849317--12849591	118	2.3	118	81	4	324	30	21	5	42	1.74
12850200--12850240	17	2.4	17	87	0	64	41	0	2	56	1.13
12850199--12850274	6	13.0	6	69	15	52	47	0	2	50	1.15
12850213--12850276	30	2.2	30	85	2	85	51	0	3	45	1.17
12851231--12851280	15	3.3	15	94	0	82	18	14	20	48	1.82
12852033--12852118	30	2.9	31	86	5	115	32	23	2	41	1.67
12852750--12853328	304	1.9	300	83	4	754	31	18	15	34	1.92
12854290--12854325	19	1.9	18	94	5	63	44	0	0	55	0.99
12854293--12854396	28	3.7	29	80	11	119	47	0	0	50	1.14
12854293--12854396	29	3.7	28	83	6	131	47	0	0	50	1.14
12855228--12855296	32	2.2	32	94	5	122	46	23	5	24	1.74
12855347--12855432	32	2.8	31	82	6	104	52	27	1	18	1.53
12865690--12865722	3	11.0	3	100	0	66	33	0	0	66	0.92
12866171--12866201	15	2.1	15	93	0	53	25	9	32	32	1.88
12866692--12866716	2	12.5	2	100	0	50	48	0	0	52	1.00
12879094--12879137	22	2.0	23	86	4	63	52	9	2	36	1.46
12880690--12880845	78	2.0	78	94	0	276	15	17	26	39	1.90
12881462--12881501	2	20.0	2	100	0	80	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12882159--12882321	87	1.9	87	82	6	206	44	11	4	40	1.59
12882325--12882362	20	1.9	20	88	0	58	34	15	10	39	1.82
12882541--12882616	21	3.8	21	74	25	83	67	2	3	26	1.22
12882502--12882616	10	11.4	10	69	15	67	63	3	4	28	1.30
12882541--12882616	39	1.9	38	85	15	102	67	2	3	26	1.22
12884297--12884337	22	1.9	21	90	5	64	26	4	4	63	1.35
12884981--12885031	17	2.8	19	73	11	61	49	0	1	49	1.12
12892895--12892958	29	2.2	30	83	8	78	35	4	9	50	1.56
12896257--12896342	30	2.9	31	73	18	85	39	3	26	30	1.73
12896257--12896560	59	5.2	56	81	8	286	35	3	29	31	1.74
12896255--12896560	118	2.6	115	84	6	371	34	3	29	31	1.75
12896343--12896560	30	7.4	28	68	20	124	33	3	30	32	1.74
12896255--12896562	29	10.4	29	68	22	128	35	3	29	31	1.75
12897581--12897628	23	2.2	21	82	10	53	43	4	0	52	1.20
12898469--12898513	16	2.7	17	86	6	65	57	2	0	40	1.11
12898484--12898533	23	2.2	24	79	17	61	54	4	0	42	1.19
12898472--12898525	27	2.0	28	85	3	74	55	5	0	38	1.23
12898491--12898533	11	3.9	11	82	8	52	53	4	0	41	1.21
12898917--12899515	200	3.0	200	94	0	1038	19	23	21	35	1.96
12900500--12900543	19	2.3	19	100	0	88	29	6	18	45	1.75
12911619--12911871	59	4.3	59	83	3	296	36	2	28	32	1.72
12911711--12911864	29	5.2	29	70	20	113	35	1	29	32	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12911690--12911843	30	5.2	30	67	22	101	35	2	27	34	1.71
12911648--12911886	30	8.1	30	67	22	96	36	3	28	31	1.74
12911765--12911886	29	4.1	31	71	23	93	36	1	29	32	1.67
12912889--12912936	23	2.2	21	82	10	53	43	4	0	52	1.20
12913773--12913817	16	2.7	17	86	6	65	57	2	0	40	1.11
12913788--12913837	23	2.2	24	79	17	61	54	4	0	42	1.19
12913776--12913829	27	2.0	28	85	3	74	55	5	0	38	1.23
12913795--12913837	11	3.9	11	82	8	52	53	4	0	41	1.21
12916241--12916309	29	2.4	29	82	4	77	52	4	1	42	1.30
12916263--12916321	29	2.0	29	80	6	66	52	1	0	45	1.10
12917771--12917824	28	2.0	27	82	7	65	29	12	7	50	1.68
12918606--12918651	21	2.3	19	81	7	56	32	0	10	56	1.34
12921957--12921987	15	2.1	15	93	0	53	48	6	38	6	1.55
12922886--12922919	16	2.1	16	88	0	50	73	0	0	26	0.83
12928762--12928795	6	5.7	6	90	10	52	85	0	14	0	0.60
12929434--12929781	174	2.0	175	87	1	502	40	22	14	21	1.90
12931603--12931877	139	2.0	141	95	1	500	33	15	10	40	1.81
12951961--12952697	216	3.4	215	94	1	1269	23	23	24	27	2.00
12957745--12958100	187	1.9	179	83	7	448	32	13	23	30	1.93
12959466--12959538	30	2.4	30	100	0	146	31	21	30	16	1.95
12974471--12974519	17	3.0	16	77	11	55	30	4	2	63	1.24
12981135--12981190	19	2.9	18	78	21	60	44	1	1	51	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
12981569--12981659	32	2.9	32	93	1	157	45	4	12	38	1.62
12989513--12989581	35	2.0	35	100	0	138	37	8	10	43	1.69
12994269--12994295	6	4.5	6	100	0	54	51	0	33	14	1.43
12998484--12998661	60	2.9	60	77	7	155	39	4	16	39	1.69
12999879--13000038	58	2.8	58	80	5	155	23	26	23	25	2.00
13000287--13000377	36	2.5	36	73	7	87	28	19	9	41	1.84
13001496--13001542	19	2.4	20	82	10	62	36	2	2	59	1.21
13001487--13001531	19	2.5	17	82	10	54	35	0	4	60	1.17
13002612--13002645	17	2.1	17	88	5	52	70	0	0	29	0.87
13020380--13020464	23	3.7	23	77	3	100	4	25	8	61	1.44
13020375--13020463	45	2.0	45	97	0	169	6	26	8	57	1.54
13026405--13026468	20	3.3	19	86	6	85	57	9	0	32	1.30
13030775--13030810	18	2.0	18	88	0	54	13	16	13	55	1.69
13039914--13040004	11	8.1	11	70	17	62	45	0	2	52	1.13
13039914--13040003	17	5.3	17	83	2	101	45	0	2	52	1.13
13041871--13042008	29	4.7	29	75	12	102	37	20	2	39	1.68
13041961--13042097	59	2.3	59	86	6	190	32	24	4	38	1.75
13041954--13042053	30	3.4	29	71	23	93	35	22	3	40	1.69
13052313--13052351	20	1.9	21	84	5	53	48	15	17	17	1.81
13052491--13053189	101	6.9	101	83	1	846	39	20	25	14	1.91
13052491--13053144	50	12.9	51	65	9	259	39	20	25	14	1.90
13053546--13053601	17	3.3	17	79	0	67	44	0	3	51	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13054160--13054213	27	2.0	27	96	0	99	40	12	14	31	1.84
13054481--13054509	14	2.0	15	93	6	51	20	55	17	6	1.65
13055528--13055619	29	3.2	28	71	25	77	30	26	5	38	1.79
13055536--13055653	57	2.1	58	85	7	161	33	27	5	34	1.79
13059536--13059586	12	4.3	12	82	2	59	62	19	7	9	1.50
13059607--13059659	20	2.6	20	78	3	61	66	16	7	9	1.43
13061832--13061889	18	3.1	18	74	13	55	60	0	3	36	1.14
13064980--13065030	26	2.0	26	84	3	68	66	0	1	31	1.03
13065402--13065447	24	1.9	24	82	8	58	54	0	8	36	1.32
13064615--13065465	434	1.9	428	79	8	939	39	9	12	38	1.76
13066835--13066876	15	2.8	15	79	13	50	35	0	2	61	1.09
13069425--13069498	36	2.0	37	89	2	114	12	25	20	41	1.87
13071224--13071267	18	2.5	17	85	3	52	34	0	0	65	0.93
13071234--13071267	17	1.9	18	88	5	52	35	0	0	64	0.94
13084462--13084508	19	2.3	20	76	20	53	61	4	0	34	1.15
13091691--13091747	25	2.5	21	81	13	60	29	12	1	56	1.46
13093751--13093812	28	2.2	28	80	5	72	43	4	4	46	1.46
13098432--13098581	29	5.2	26	72	19	104	50	11	16	22	1.76
13098414--13098604	60	3.2	60	83	8	212	47	12	16	23	1.80
13100125--13100184	20	3.0	20	82	0	66	53	6	1	38	1.37
13105334--13105385	24	2.2	24	82	0	59	53	0	1	44	1.11
13107989--13108054	35	1.9	34	84	9	89	37	12	9	40	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13109524--13109564	16	2.6	16	81	18	50	51	0	0	48	1.00
13109525--13109585	18	3.6	17	77	14	56	54	0	3	42	1.17
13109543--13109583	18	2.2	19	86	4	57	60	0	4	34	1.18
13122200--13122226	6	4.5	6	100	0	54	48	0	0	51	1.00
13128468--13128504	2	19.5	2	83	10	51	45	2	0	51	1.15
13128889--13128996	17	6.3	17	86	4	146	41	0	2	54	1.21
13128920--13128975	11	4.9	11	80	10	51	37	0	3	58	1.15
13128904--13128996	6	16.2	6	72	12	79	40	1	2	55	1.19
13128914--13128975	23	2.7	23	80	14	74	38	0	3	58	1.15
13128889--13129010	51	2.4	51	87	2	165	44	0	3	51	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135