genome.fa.s10.2.7.7.80.10.50.1000.112.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  112  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38144550--38144585	14	2.5	14	90	4	54	80	0	19	0	0.71
38146491--38146938	99	4.5	99	74	4	348	37	17	27	18	1.93
38146456--38147336	49	17.8	50	71	11	311	36	17	27	18	1.93
38146735--38146833	51	2.0	50	85	2	135	36	18	25	20	1.95
38146504--38147336	150	5.6	150	74	8	684	36	17	27	18	1.93
38146873--38146982	51	2.2	50	86	1	157	36	16	25	21	1.94
38146504--38147347	447	1.9	447	91	0	1402	36	17	27	18	1.94
38147606--38148006	39	10.4	39	76	9	340	31	27	16	24	1.97
38147606--38147856	117	2.1	117	88	2	380	32	29	15	22	1.95
38147606--38148279	78	8.7	78	84	4	654	32	24	16	25	1.96
38148724--38148757	16	2.1	17	88	5	52	79	5	2	11	1.02
38149278--38149439	69	2.3	69	90	1	252	33	8	6	51	1.59
38149290--38149507	61	3.4	60	77	11	175	34	7	6	51	1.55
38154247--38154307	16	3.8	16	69	16	54	45	6	14	32	1.71
38158152--38158279	63	2.0	63	100	0	256	41	17	6	35	1.74
38159840--38159880	12	3.2	13	83	13	50	2	14	7	75	1.12
38160542--38160571	14	2.1	14	100	0	60	20	13	0	66	1.24
38161066--38161120	16	3.4	16	75	9	58	41	7	25	25	1.81
38161290--38161444	58	2.6	59	84	9	192	51	1	1	45	1.17
38161409--38161459	24	2.1	24	82	10	59	56	0	5	37	1.23
38164058--38164118	28	2.2	28	82	11	81	26	9	27	36	1.88
38164095--38164270	30	6.0	29	66	20	89	34	5	29	30	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38164337--38164430	30	3.2	30	64	17	70	34	4	28	32	1.77
38164349--38164501	29	5.2	28	67	20	98	32	2	30	34	1.72
38164347--38164499	30	5.2	28	65	23	82	32	2	29	35	1.71
38164126--38164532	117	3.5	117	83	4	507	33	3	29	32	1.76
38164428--38164562	30	4.6	29	73	20	111	33	1	28	36	1.67
38164129--38164532	59	6.9	60	83	5	459	33	3	29	32	1.75
38166210--38166298	6	15.0	6	74	18	80	50	0	4	44	1.22
38166231--38166281	11	4.8	11	76	9	52	52	0	5	41	1.25
38166224--38166298	31	2.3	32	90	4	116	53	0	4	42	1.19
38166225--38166298	17	4.6	17	85	11	102	54	0	4	41	1.19
38166210--38166298	17	5.4	16	82	11	92	50	0	4	44	1.22
38166621--38167050	38	11.3	38	65	26	119	31	18	16	33	1.93
38166596--38167180	76	7.8	76	89	3	864	31	18	16	32	1.94
38179249--38179309	28	2.2	28	82	11	81	26	9	27	36	1.88
38179320--38179666	59	5.9	58	85	3	435	34	4	29	32	1.76
38179334--38179666	177	1.9	178	88	3	510	33	3	29	33	1.76
38179442--38179691	30	8.5	29	67	23	130	34	2	28	34	1.71
38179350--38179664	118	2.7	119	90	1	490	34	3	28	33	1.75
38181347--38181441	6	16.0	6	76	17	92	50	0	4	45	1.21
38181374--38181424	11	4.8	11	76	9	52	52	0	5	41	1.25
38181361--38181434	37	2.0	37	86	5	105	52	0	4	43	1.20
38181352--38181441	17	5.5	16	82	12	103	52	0	4	43	1.21
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38186270--38186301	2	16.0	2	100	0	64	50	0	0	50	1.00
38188591--38188644	26	2.1	26	100	0	108	33	7	31	27	1.84
38217229--38217256	12	2.3	12	100	0	56	50	0	0	50	1.00
38219204--38220343	440	2.6	439	86	4	1587	35	15	14	34	1.88
38220407--38220463	24	2.4	24	87	0	78	28	14	7	50	1.68
38221915--38221977	24	2.6	24	87	0	90	23	14	12	49	1.78
38228944--38229016	36	2.1	35	82	12	87	60	0	4	35	1.16
38228944--38229016	37	2.1	34	84	7	92	60	0	4	35	1.16
38228980--38229031	24	2.1	25	82	13	63	67	0	5	26	1.13
38228980--38229031	25	2.1	26	85	7	72	67	0	5	26	1.13
38228937--38229115	62	2.7	66	79	18	183	63	0	4	31	1.14
38228939--38229104	67	2.4	69	80	16	193	64	0	4	31	1.13
38229047--38229103	30	1.9	29	86	10	80	70	0	5	24	1.08
38229162--38229220	11	5.5	11	74	11	59	49	8	10	32	1.67
38229228--38229288	15	3.9	15	79	8	68	50	3	4	40	1.40
38229291--38229333	19	2.4	19	84	7	54	62	0	4	32	1.15
38229747--38229804	14	3.8	15	76	15	57	60	3	3	32	1.30
38242279--38242346	26	2.6	26	78	0	82	17	17	36	27	1.93
38259524--38259712	42	4.5	42	83	2	218	26	26	10	36	1.88
38267395--38267424	7	4.3	7	95	0	51	30	36	0	33	1.58
38268405--38268456	24	2.0	27	89	10	83	42	3	11	42	1.59
38270141--38270229	30	3.1	28	82	10	99	61	3	8	25	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38272947--38273133	51	3.6	50	83	7	216	32	13	24	29	1.94
38274811--38275088	51	5.4	51	89	2	389	29	13	24	31	1.94
38274811--38275035	101	2.2	102	93	0	380	29	13	25	31	1.93
38276207--38276262	15	3.8	15	77	18	64	33	0	8	57	1.30
38276576--38276632	26	2.3	26	79	14	66	42	1	0	56	1.10
38276848--38276905	24	2.5	23	75	5	62	36	8	1	53	1.42
38276896--38276994	12	8.4	11	71	14	63	45	3	5	46	1.40
38276896--38276951	23	2.4	23	81	3	67	44	5	3	46	1.43
38276851--38276991	6	23.8	6	66	13	51	42	5	4	47	1.46
38276885--38276975	35	2.6	35	80	3	103	43	4	3	48	1.39
38276896--38276951	24	2.3	25	84	6	71	44	5	3	46	1.43
38276914--38276968	17	3.2	17	77	7	67	45	3	3	47	1.38
38276890--38276994	11	8.8	12	72	16	67	44	2	4	47	1.38
38277097--38277134	19	2.0	19	89	0	58	47	10	0	42	1.38
38277117--38277197	36	2.2	36	82	6	101	40	4	6	48	1.50
38280407--38280453	23	2.1	22	88	11	69	34	0	0	65	0.93
38280427--38280479	17	2.9	18	72	10	63	35	1	1	60	1.19
38281024--38281141	37	2.9	41	76	20	113	42	14	13	29	1.84
38281066--38281150	43	2.0	44	88	6	129	42	11	14	31	1.81
38281121--38281245	58	2.2	57	81	8	137	40	13	14	32	1.85
38282784--38283024	118	2.0	118	98	0	464	33	19	13	32	1.91
38289967--38290019	21	2.5	21	88	11	74	32	26	13	28	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38291716--38291759	22	2.0	23	86	4	63	31	18	4	45	1.69
38307349--38307374	11	2.4	11	100	0	52	30	7	15	46	1.74
38308315--38308345	15	2.1	15	93	0	53	25	12	35	25	1.92
38314890--38315176	52	5.5	52	88	0	394	24	13	24	37	1.91
38314890--38315224	52	6.4	52	82	3	217	25	14	22	37	1.92
38314890--38315224	104	3.2	103	81	5	381	25	14	22	37	1.92
38314890--38315224	156	2.1	156	80	3	388	25	14	22	37	1.92
38317698--38317832	40	3.4	38	73	12	96	30	28	20	21	1.98
38317730--38317833	37	2.7	38	76	5	93	31	26	19	22	1.97
38318699--38318757	11	4.9	12	76	13	50	52	1	0	45	1.10
38323836--38323939	37	2.7	38	76	5	93	31	26	19	22	1.97
38324803--38324861	11	4.9	12	76	13	50	52	1	0	45	1.10
38328062--38328093	16	2.0	16	93	0	55	25	18	3	53	1.59
38336646--38336680	16	2.2	16	90	10	54	34	0	0	65	0.93
38336630--38337787	388	3.0	387	88	4	1657	35	10	10	44	1.72
38338895--38338983	40	2.2	40	95	0	160	29	24	14	31	1.95
38342176--38342227	26	2.0	27	84	3	70	61	0	1	36	1.07
38342590--38342663	28	2.7	29	72	16	75	21	1	29	47	1.59
38351529--38351599	17	4.2	17	75	10	65	19	19	30	29	1.97
38352615--38352652	2	19.0	2	100	0	76	50	0	0	50	1.00
38355216--38355284	18	3.9	17	71	17	52	21	8	4	65	1.38
38358462--38358500	16	2.8	13	79	20	51	28	20	10	41	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38361444--38361492	17	2.9	17	78	0	62	51	12	18	18	1.76
38361443--38361500	17	3.4	17	72	9	55	50	10	22	17	1.76
38361444--38361510	34	2.0	34	81	0	80	49	10	20	19	1.77
38365553--38365612	24	2.5	24	79	12	70	30	26	18	25	1.98
38367790--38367834	5	9.0	5	81	18	58	82	0	17	0	0.68
38367789--38367850	21	3.0	21	86	6	74	80	0	19	0	0.71
38367795--38367831	17	2.2	17	100	0	74	83	0	16	0	0.64
38367788--38367824	12	3.3	12	82	17	53	83	0	16	0	0.64
38369021--38369179	49	3.2	48	72	5	129	37	14	27	20	1.92
38368810--38369095	93	3.0	96	78	11	323	37	16	25	19	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135