genome.fa.s10.2.7.7.80.10.50.1000.129.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  129  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41877458--41877482	11	2.3	11	100	0	50	48	8	0	44	1.32
41880279--41880310	15	2.1	15	94	0	55	28	0	0	71	0.86
41889300--41889358	24	2.5	24	81	10	59	37	5	0	57	1.21
41889350--41889439	15	6.2	14	69	19	60	46	0	1	52	1.07
41889319--41889438	58	2.0	62	85	12	169	45	1	0	52	1.16
41890258--41890311	17	3.4	15	80	12	54	57	3	0	38	1.17
41890258--41890333	33	2.3	32	84	6	89	57	3	0	38	1.17
41890854--41890909	29	2.0	29	82	6	71	35	1	0	62	1.06
41897962--41897995	2	17.0	2	100	0	68	50	50	0	0	1.00
41898973--41899047	31	2.4	31	84	4	89	34	17	8	40	1.79
41907292--41907359	24	2.8	24	88	0	100	29	17	22	30	1.97
41909328--41909359	14	2.3	14	100	0	64	25	28	0	46	1.53
41911705--41911763	24	2.5	24	88	0	91	22	18	25	33	1.96
41913632--41913682	21	2.5	20	72	15	50	39	7	0	52	1.30
41913723--41913761	21	1.9	20	89	5	60	41	0	5	53	1.23
41915257--41915289	17	1.9	17	88	11	50	60	3	0	36	1.12
41924288--41924366	39	2.0	39	100	0	158	27	22	5	44	1.74
41930616--41930782	90	1.9	89	79	3	192	46	14	8	29	1.74
41930782--41930948	89	1.9	89	80	5	194	46	16	6	30	1.72
41938501--41938547	21	2.1	23	77	18	55	42	2	4	51	1.33
41938612--41938652	20	2.0	20	100	0	82	39	26	9	24	1.86
41945097--41945140	9	4.9	9	97	0	79	75	0	0	25	0.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41948441--41948609	23	7.3	23	81	7	157	42	21	24	11	1.86
41948487--41948609	46	2.7	46	85	2	176	42	21	24	11	1.86
41948441--41948585	69	2.1	66	85	10	184	42	20	24	12	1.86
41955229--41955520	52	5.6	52	88	0	404	26	14	22	35	1.93
41959534--41959592	24	2.5	24	88	0	91	28	22	23	25	1.99
41963486--41963536	20	2.6	19	84	9	66	37	0	5	56	1.23
41963494--41963537	20	2.2	20	91	0	70	36	0	4	59	1.18
41963500--41963547	10	4.8	10	76	0	51	35	0	4	60	1.16
41973967--41973991	1	25.0	1	100	0	50	0	0	100	0	0.00
41975579--41975621	22	1.9	23	90	4	70	62	11	2	23	1.40
41975678--41975706	3	9.7	3	100	0	58	68	0	0	31	0.89
41978000--41978031	14	2.4	14	94	5	57	43	0	3	53	1.16
41978041--41978113	33	2.2	32	81	11	85	34	1	10	53	1.45
41978456--41978509	15	3.3	15	74	18	54	44	0	1	53	1.11
41978589--41978644	18	2.9	19	73	26	55	51	0	0	48	1.00
41990747--41990916	90	1.9	90	86	2	241	33	23	10	32	1.89
41990838--41990994	81	1.9	81	89	2	244	36	21	8	32	1.85
41993784--41993952	71	2.4	71	92	0	284	22	12	22	42	1.87
41997179--41997240	21	3.0	21	81	9	72	29	25	11	33	1.91
41997987--41998079	40	2.3	42	92	3	154	31	29	12	26	1.93
42031137--42031192	28	2.0	28	82	6	69	57	3	8	30	1.47
42031878--42032965	537	2.0	541	91	2	1760	37	11	13	37	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42034569--42034843	71	3.9	71	85	3	349	36	20	12	29	1.90
42034577--42034835	141	1.8	142	88	0	403	35	20	12	30	1.90
42036092--42036375	71	4.0	71	82	0	309	35	17	14	32	1.91
42036092--42036352	142	1.8	142	83	1	344	36	18	13	31	1.90
42037784--42038389	223	2.7	222	90	1	892	32	19	13	34	1.91
42038201--42039006	197	4.0	198	71	10	670	31	21	14	32	1.93
42037978--42039479	420	3.6	421	92	2	2280	30	20	13	34	1.92
42039069--42039432	199	1.8	198	89	1	577	34	20	14	30	1.93
42041150--42041270	55	2.2	53	89	7	188	43	6	14	35	1.71
42041667--42044615	211	14.0	209	83	7	3172	31	18	13	36	1.89
42041666--42044615	620	4.7	617	83	6	3193	31	18	13	36	1.89
42041667--42044615	410	7.0	412	82	7	3072	31	18	13	36	1.89
42043540--42044150	227	2.7	226	88	3	917	31	19	14	34	1.92
42045908--42045949	22	1.9	22	85	0	57	42	4	0	52	1.22
42047015--42049094	213	10.0	211	83	6	2548	31	17	13	37	1.88
42047016--42049056	413	4.9	403	84	7	2544	32	17	13	37	1.88
42047017--42049094	211	10.0	209	83	7	2514	31	17	13	37	1.88
42049928--42049966	19	2.1	19	85	9	53	56	0	0	43	0.99
42050128--42050171	22	2.0	21	82	4	52	29	0	9	61	1.27
42051345--42051389	21	2.2	21	84	4	56	62	2	0	35	1.08
42064636--42064706	34	2.0	35	86	10	99	53	1	4	40	1.29
42064923--42064982	30	2.0	31	90	3	95	36	0	43	20	1.52
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42065135--42065181	23	2.1	22	84	11	60	53	0	23	23	1.47
42070202--42070235	14	2.5	14	90	4	52	38	0	0	61	0.96
42070639--42070681	21	2.0	21	82	8	52	27	11	18	41	1.85
42071408--42071724	29	11.0	29	75	12	187	36	28	4	29	1.78
42071541--42071702	56	2.8	56	82	10	175	39	28	4	27	1.77
42071591--42071724	56	2.4	55	80	7	144	39	29	3	27	1.74
42073654--42073770	24	4.9	24	90	0	180	26	24	13	35	1.93
42080060--42080912	360	2.3	359	84	5	1065	49	12	5	32	1.65
42081228--42081312	21	4.0	21	79	13	86	28	2	5	63	1.30
42081247--42081301	20	2.6	21	85	11	76	32	0	5	61	1.19
42086403--42086458	2	28.0	2	100	0	112	50	0	0	50	1.00
42088546--42088730	47	3.9	47	89	0	244	27	18	20	34	1.96
42092239--42092280	21	2.0	21	95	0	75	40	9	26	23	1.85
42095146--42095183	19	2.0	19	94	0	67	34	10	21	34	1.87
42096653--42096707	16	3.5	16	78	9	51	58	1	0	40	1.09
42096619--42096725	36	3.0	34	78	17	94	55	3	0	41	1.18
42101440--42101480	22	1.9	21	95	5	73	31	2	17	48	1.60
42102755--42102789	18	1.9	18	88	0	52	31	8	20	40	1.82
42102923--42103229	145	2.2	135	83	10	363	26	35	0	38	1.59
42104624--42104681	23	2.6	23	78	8	66	24	27	15	32	1.95
42106241--42106304	22	3.1	21	73	17	71	40	0	3	56	1.15
42106245--42106312	22	3.2	21	72	17	61	42	0	2	54	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42119552--42119592	18	2.4	17	83	4	55	29	0	2	68	1.03
42123424--42123466	13	3.4	12	78	9	50	74	0	4	20	1.00
42130840--42130898	6	9.8	6	73	14	50	38	3	1	55	1.26
42130856--42130883	14	2.0	14	100	0	56	35	7	0	57	1.26
42132996--42133566	30	19.5	30	67	24	258	32	28	3	35	1.74
42132965--42133566	59	10.3	59	86	4	790	32	28	3	35	1.73
42132965--42133566	117	5.1	117	84	4	811	32	28	3	35	1.73
42148134--42148326	98	2.0	98	85	4	264	32	5	15	46	1.69
42157744--42157795	23	2.4	21	87	9	70	50	0	1	48	1.12
42166627--42166706	39	2.0	40	90	2	126	28	16	22	32	1.95
42171500--42171590	39	2.4	39	83	7	98	28	18	23	29	1.98
42171517--42171596	39	2.0	39	92	2	133	28	18	22	30	1.98
42177181--42177210	3	10.0	3	100	0	60	33	0	0	66	0.92
42177529--42177558	14	2.1	14	93	0	51	63	16	0	20	1.31
42177583--42177656	36	2.1	36	100	0	148	36	27	0	36	1.57
42192215--42192275	31	2.0	31	83	6	79	44	3	14	37	1.62
42195452--42195522	32	2.2	32	85	5	90	7	5	22	64	1.39
42195465--42195534	32	2.2	33	84	2	88	7	4	20	68	1.30
42195514--42195613	20	5.1	20	67	24	52	9	4	19	68	1.33
42195532--42195599	23	2.9	23	80	2	82	7	5	19	67	1.36
42195519--42195599	12	6.8	12	70	8	67	8	4	17	69	1.33
42195566--42195614	21	2.3	22	79	13	57	8	2	20	69	1.24
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42195997--42196556	192	2.9	192	98	0	1057	27	14	14	43	1.84
42202674--42202714	22	1.9	21	90	5	64	60	0	0	39	0.96
42218995--42219037	21	2.0	20	82	8	50	58	2	4	34	1.32
42219825--42219863	3	13.0	3	94	0	69	35	33	0	30	1.58
42221198--42221293	18	5.3	19	75	14	112	56	10	28	5	1.54
42221190--42221301	36	3.1	36	92	0	179	57	8	29	4	1.49
42221201--42221318	36	3.3	35	90	2	164	57	6	30	5	1.46
42221178--42221331	72	2.1	72	83	5	195	57	9	29	3	1.47
42221190--42221334	18	8.1	18	64	18	61	57	8	29	4	1.46
42227353--42227481	27	4.6	28	71	18	97	44	10	12	33	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135