genome.fa.s10.2.7.7.80.10.50.1000.102.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  102  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34964481--34964541	12	5.3	12	80	9	56	67	31	0	1	1.01
34964481--34964541	24	2.7	22	87	7	79	67	31	0	1	1.01
34977232--34977297	34	1.9	34	87	6	98	18	30	6	45	1.73
34979973--34980006	16	2.1	17	88	5	52	58	0	20	20	1.39
34980733--34980764	16	2.0	16	93	0	55	34	12	21	31	1.91
34982365--34982406	17	2.4	17	88	4	57	21	26	2	50	1.61
34984083--34984135	21	2.6	21	84	3	72	66	22	5	5	1.35
35001912--35002015	52	2.0	52	84	3	138	42	1	8	47	1.45
35002797--35002870	21	3.5	21	92	7	116	32	22	13	31	1.93
35002924--35002986	21	2.8	22	76	17	67	44	26	4	23	1.73
35004322--35004349	2	14.0	2	100	0	56	50	0	0	50	1.00
35005830--35005947	63	1.9	61	89	3	182	37	33	5	23	1.79
35008292--35008339	21	2.3	21	100	0	96	41	4	16	37	1.68
35012439--35012510	31	2.3	32	81	9	87	44	22	8	25	1.80
35012257--35012607	174	2.0	174	81	4	404	35	17	17	29	1.93
35015311--35015444	35	3.8	35	87	3	153	24	17	25	32	1.96
35015311--35015355	17	2.6	18	82	7	56	26	15	22	35	1.94
35015311--35015447	70	1.9	71	85	7	190	24	17	25	32	1.97
35015348--35015451	18	5.9	17	74	9	84	22	19	26	31	1.97
35015386--35015467	36	2.3	35	78	4	83	26	18	26	28	1.98
35022108--35022215	35	3.1	35	89	1	171	21	20	26	31	1.98
35022108--35022215	18	6.1	18	84	4	148	21	20	26	31	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35029427--35029486	26	2.3	25	80	13	59	36	1	1	60	1.17
35041285--35041543	43	6.0	42	80	2	248	24	26	18	29	1.98
35041289--35041543	86	3.0	86	84	0	312	25	25	18	30	1.98
35041285--35041543	129	2.0	129	83	1	322	24	26	18	29	1.98
35047727--35047753	6	4.5	6	100	0	54	29	0	14	55	1.40
35047948--35047988	12	3.6	12	87	12	68	53	0	0	46	1.00
35047947--35047988	22	1.9	22	100	0	84	54	0	0	45	0.99
35048010--35048045	8	4.5	8	92	0	63	63	2	0	33	1.08
35051341--35051468	34	4.1	31	77	12	86	32	3	0	63	1.18
35051400--35051454	28	1.9	29	85	3	76	34	1	0	63	1.05
35051351--35051423	3	25.3	3	70	22	50	30	4	0	65	1.11
35051419--35051447	11	2.5	12	94	5	51	37	0	0	62	0.96
35051410--35051471	23	2.7	22	71	14	54	32	1	1	64	1.13
35051439--35051507	17	4.2	17	75	17	65	30	2	5	60	1.34
35051411--35051465	29	1.9	28	88	3	83	32	1	1	63	1.15
35052214--35052367	40	3.8	41	80	5	195	16	25	16	41	1.89
35052214--35052386	40	4.2	42	79	6	174	16	26	15	42	1.87
35052229--35052386	83	1.9	83	92	0	262	16	25	15	41	1.88
35052584--35052638	21	2.7	20	74	23	51	47	1	3	47	1.30
35062493--35062809	109	2.9	109	88	1	456	34	12	13	40	1.82
35067203--35067291	35	2.6	34	78	5	90	30	22	24	22	1.99
35078286--35078311	12	2.2	12	100	0	52	42	15	7	34	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35081993--35082052	25	2.4	24	81	10	66	61	1	1	35	1.16
35082015--35082065	7	6.7	7	79	20	50	64	0	3	31	1.11
35095660--35095685	13	2.0	13	100	0	52	76	0	23	0	0.78
35099079--35099121	21	2.0	21	82	8	52	16	11	30	41	1.83
35099087--35099138	27	1.9	27	88	7	79	15	13	30	40	1.86
35100946--35100982	16	2.4	15	95	4	65	59	5	0	35	1.20
35109049--35109255	106	2.0	104	88	5	310	42	6	9	42	1.62
35109186--35109552	123	3.0	122	89	2	565	42	7	11	38	1.69
35116875--35117082	79	2.6	79	95	0	371	43	8	9	38	1.67
35117015--35117379	123	3.0	122	89	2	523	42	7	11	38	1.69
35120015--35120039	9	2.8	9	100	0	50	24	12	0	64	1.27
35133599--35133712	10	13.3	9	72	18	68	62	4	1	31	1.25
35133653--35133700	24	2.0	25	84	12	64	60	6	0	33	1.22
35133595--35133742	65	2.2	68	79	13	173	62	5	2	29	1.31
35134511--35134538	5	5.6	5	100	0	56	82	0	0	17	0.68
35136997--35137033	16	2.3	16	86	13	58	40	0	0	59	0.97
35137047--35137102	18	2.9	19	73	26	55	51	0	1	46	1.11
35144520--35144569	20	2.5	20	81	15	50	42	0	16	42	1.47
35150209--35150545	30	11.2	30	82	5	376	34	24	2	39	1.67
35150232--35150545	90	3.5	90	89	3	461	35	24	1	39	1.64
35164661--35164983	30	10.8	30	84	4	366	34	24	2	38	1.69
35166948--35166976	11	2.6	11	100	0	58	27	31	31	10	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35171596--35171628	14	2.4	14	90	5	50	69	3	0	27	1.03
35176378--35176419	15	2.9	14	82	10	57	50	0	2	47	1.14
35178289--35178352	28	2.2	29	84	13	80	26	7	3	62	1.38
35178413--35178437	13	1.9	13	100	0	50	36	0	0	64	0.94
35178422--35178679	30	8.6	30	82	4	279	34	23	1	40	1.66
35178431--35178666	60	4.0	60	87	3	325	34	24	1	39	1.66
35178422--35178679	119	2.2	120	87	3	369	34	23	1	40	1.66
35187887--35187989	37	2.7	38	77	6	91	23	19	26	31	1.98
35190503--35190662	85	1.9	85	88	0	239	39	16	21	22	1.92
35190451--35190940	211	2.3	208	89	2	755	38	17	21	22	1.93
35190755--35190825	37	1.9	37	88	0	106	33	16	25	23	1.96
35190707--35190873	85	2.0	85	87	2	246	35	16	26	21	1.94
35190840--35191052	112	1.9	112	85	1	293	38	18	18	23	1.93
35191028--35191146	48	2.5	48	83	0	148	36	12	24	26	1.91
35190952--35191259	171	1.8	171	88	2	476	38	15	20	24	1.92
35191074--35191485	208	2.0	209	86	0	583	37	16	21	24	1.93
35191188--35191364	85	2.1	85	84	3	230	38	16	20	23	1.92
35193424--35193448	13	1.9	13	100	0	50	36	0	0	64	0.94
35193465--35193689	30	7.6	30	85	4	251	34	24	2	39	1.67
35194941--35194991	21	2.5	21	87	3	68	56	0	0	43	0.99
35198923--35198961	15	2.4	16	87	8	53	17	2	0	79	0.84
35199757--35199904	30	4.9	31	75	10	121	35	19	4	39	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35199745--35199894	60	2.5	59	78	8	160	36	19	4	39	1.72
35205456--35205516	23	2.7	23	80	12	63	78	0	18	3	0.88
35205471--35205520	20	2.5	21	81	18	63	78	0	20	2	0.86
35206501--35207018	50	10.5	50	72	10	330	35	15	29	19	1.92
35206501--35207032	149	3.6	148	75	7	377	35	15	29	19	1.93
35206501--35206904	99	4.1	100	81	7	457	35	15	29	18	1.93
35206840--35207041	49	4.1	49	76	11	173	35	16	25	21	1.95
35207163--35208107	78	12.1	78	91	1	1439	32	25	17	24	1.97
35209106--35209146	21	1.9	22	90	5	66	14	9	0	75	1.04
35209840--35210080	30	8.1	30	74	9	190	35	21	4	38	1.75
35211696--35211735	17	2.4	17	91	0	62	47	25	12	15	1.80
35214300--35214325	4	6.5	4	100	0	52	76	0	0	23	0.78
35214320--35214378	28	2.1	28	84	6	75	61	0	1	37	1.07
35227489--35227536	10	4.7	10	84	5	60	31	0	2	66	1.03
35227555--35227624	35	2.0	35	83	8	88	38	1	4	55	1.28
35229666--35229715	17	2.9	18	70	8	50	44	18	10	28	1.81
35235494--35235563	8	8.8	8	75	10	54	62	2	5	28	1.32
35235704--35235761	19	3.2	17	72	15	53	70	5	3	20	1.21
35235727--35235761	19	1.9	19	88	11	56	71	8	0	20	1.11
35242223--35242359	64	2.1	64	90	1	211	25	16	21	35	1.95
35242240--35242384	64	2.3	64	87	4	213	26	17	24	31	1.97
35245287--35245440	61	2.5	62	83	5	195	30	14	23	31	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35250457--35250819	195	1.9	194	81	4	453	26	23	19	30	1.98
35250457--35250860	195	2.1	194	81	6	451	26	24	18	29	1.98
35250735--35250971	105	2.3	105	90	0	384	27	26	16	29	1.97
35255490--35255524	18	1.9	18	88	0	52	54	2	2	40	1.30
35273914--35273966	22	2.5	22	93	3	90	37	11	5	45	1.64
35274861--35274903	9	4.8	9	79	0	50	37	23	6	32	1.82
35274767--35275073	126	2.6	118	89	6	442	41	19	7	31	1.79
35274983--35275029	9	5.2	9	78	0	58	38	21	6	34	1.79
35274967--35275033	27	2.6	27	85	4	84	37	20	7	34	1.81
35275077--35275172	23	4.1	23	82	1	111	45	14	5	34	1.67

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135