genome.fa.s10.2.7.7.80.10.50.1000.103.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  103  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35275077--35275286	46	4.3	46	76	10	195	46	13	4	35	1.64
35275119--35275227	55	2.0	55	83	0	137	47	13	5	33	1.66
35275096--35275250	78	2.0	78	97	0	292	47	14	5	32	1.66
35275174--35275286	23	4.9	23	86	0	145	47	12	4	35	1.61
35275365--35275401	10	3.7	10	85	0	56	37	21	2	37	1.68
35275388--35275608	47	4.6	47	73	12	196	40	20	4	33	1.73
35275520--35275631	58	1.9	59	87	1	163	41	23	5	30	1.76
35276147--35276283	36	3.9	36	79	7	156	37	21	8	32	1.84
35279523--35279681	79	2.0	80	84	6	207	34	24	18	22	1.96
35279720--35279868	81	1.8	81	84	8	205	29	24	22	23	1.99
35286484--35286537	21	2.6	21	76	5	56	29	27	14	27	1.95
35288922--35289081	28	5.7	28	74	8	146	35	21	15	28	1.93
35288919--35289083	56	2.9	56	85	1	215	35	21	15	27	1.93
35291830--35291863	17	2.0	17	94	0	59	44	0	38	17	1.49
35293443--35293529	38	2.3	38	78	7	95	29	3	58	8	1.43
35293520--35293562	6	7.2	6	100	0	86	34	0	65	0	0.93
35293962--35294030	34	2.0	34	100	0	138	40	8	15	34	1.79
35303066--35303323	91	2.8	89	82	5	302	36	20	9	33	1.85
35303419--35303476	31	1.9	31	85	3	82	62	1	1	34	1.16
35303796--35303891	20	4.8	20	98	0	183	42	4	0	53	1.20
35303796--35303914	60	2.0	59	88	1	175	41	4	1	52	1.30
35303796--35303915	40	3.0	40	90	2	154	41	4	1	52	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35303801--35303928	60	2.1	60	85	4	168	41	4	1	52	1.32
35303902--35303967	29	2.3	30	78	7	73	40	1	0	57	1.08
35310348--35310389	17	2.4	17	88	4	57	21	28	2	47	1.63
35310328--35310375	24	2.0	24	83	0	60	18	35	2	43	1.62
35312503--35312541	19	2.1	19	100	0	78	56	15	5	23	1.59
35316114--35316159	24	1.9	24	82	8	58	45	15	10	28	1.79
35330806--35330875	30	2.3	30	85	9	90	21	8	11	58	1.59
35340033--35340265	52	4.5	52	87	1	317	28	14	22	34	1.93
35341008--35341059	17	2.7	21	77	22	76	25	13	26	34	1.93
35345182--35345229	26	2.0	26	84	15	68	37	14	8	39	1.76
35345446--35345552	20	5.8	18	70	22	62	52	1	2	42	1.26
35345636--35345666	9	3.3	9	95	4	53	41	0	0	58	0.98
35356370--35356553	90	2.0	90	97	0	350	28	16	24	29	1.97
35356574--35356638	12	5.1	13	77	15	57	63	1	35	0	1.04
35363006--35363122	37	3.2	36	75	17	107	39	1	3	55	1.27
35363007--35363116	19	5.9	18	71	19	66	40	1	3	54	1.28
35363115--35363161	19	2.4	20	83	13	62	42	0	2	55	1.12
35363114--35363161	18	2.5	19	78	21	55	43	0	2	54	1.12
35363115--35363152	20	1.9	21	89	10	62	44	0	2	52	1.14
35372981--35373012	14	2.3	14	100	0	64	31	34	6	28	1.82
35374521--35374648	44	2.9	44	95	0	220	26	18	8	46	1.78
35374806--35374886	33	2.5	33	87	0	117	25	8	40	24	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35382718--35383012	136	2.1	138	85	7	386	49	13	2	34	1.55
35382964--35383015	27	2.0	25	88	7	77	65	3	1	28	1.21
35382762--35383044	136	2.1	138	81	7	326	49	15	1	33	1.54
35383536--35383560	10	2.5	10	100	0	50	28	0	0	72	0.86
35384698--35384912	107	2.0	107	100	0	430	28	24	12	34	1.92
35392175--35392228	27	2.0	27	85	7	74	31	29	12	25	1.93
35412629--35412674	25	1.9	25	86	8	69	32	4	6	56	1.45
35418872--35419176	118	2.6	118	84	4	377	32	22	23	21	1.98
35419726--35419815	3	30.7	3	71	22	59	24	1	2	72	1.03
35419726--35419815	23	4.0	21	82	15	83	24	1	2	72	1.03
35419722--35419811	29	3.1	29	79	17	98	23	1	3	72	1.06
35419726--35419816	5	16.2	5	73	22	58	24	1	2	72	1.02
35419745--35419816	28	2.6	27	83	14	94	23	0	2	73	0.96
35419737--35419815	23	3.4	23	81	14	92	22	1	2	73	1.03
35422207--35422236	8	3.8	8	95	0	51	83	0	6	10	0.81
35422194--35422252	12	4.7	12	76	12	55	81	0	8	10	0.88
35422195--35422260	20	3.3	19	83	14	80	81	0	9	9	0.87
35422195--35422277	21	4.1	21	80	13	66	75	0	13	10	1.04
35423323--35423368	25	1.9	25	86	8	69	32	4	6	56	1.45
35430458--35430551	31	3.3	28	76	13	104	26	6	9	57	1.55
35430502--35430591	32	2.8	31	76	3	90	26	10	8	54	1.63
35430827--35430910	34	2.4	35	77	16	93	54	5	2	36	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35431475--35431528	9	5.8	9	78	6	54	53	14	7	24	1.66
35431485--35431528	19	2.3	19	92	0	70	54	15	6	22	1.65
35454188--35454318	66	2.0	66	90	0	208	43	18	6	31	1.76
35455315--35455413	42	2.4	42	88	6	139	48	16	21	14	1.80
35457320--35457414	50	1.9	50	86	0	136	55	13	6	24	1.61
35458010--35458038	12	2.3	13	94	5	51	55	17	6	20	1.65
35461375--35461624	52	4.9	50	83	5	272	38	14	14	32	1.86
35461402--35461624	52	4.3	52	86	2	317	37	14	14	33	1.87
35461402--35461624	103	2.2	102	87	2	313	37	14	14	33	1.87
35465312--35465495	50	3.6	51	80	5	201	38	12	13	36	1.82
35478715--35478771	3	19.0	3	77	13	55	70	0	29	0	0.88
35478715--35478771	18	3.2	17	80	9	69	70	0	29	0	0.88
35479125--35479168	17	2.6	17	85	0	61	15	9	11	63	1.51
35491307--35491588	32	8.8	32	84	1	269	29	18	14	37	1.91
35491309--35491581	96	2.8	97	82	1	325	29	18	14	37	1.90
35492342--35492378	19	2.0	19	89	5	58	24	10	13	51	1.73
35505908--35505954	18	2.7	17	87	6	67	14	12	10	61	1.56
35506533--35506575	6	6.8	6	80	19	52	79	0	20	0	0.74
35506535--35506575	13	3.2	13	83	10	57	80	0	19	0	0.71
35506535--35506573	21	1.9	20	94	5	69	79	0	20	0	0.73
35518473--35518503	15	2.1	14	94	5	53	45	6	29	19	1.75
35525246--35525288	17	2.5	17	79	20	54	16	13	18	51	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35525853--35525893	10	3.9	10	84	9	55	78	0	21	0	0.76
35546433--35546476	23	2.0	22	86	4	61	45	15	0	38	1.47
35549968--35550022	21	2.6	22	75	16	62	76	0	21	1	0.88
35556226--35556268	22	2.0	22	85	0	59	25	18	16	39	1.91
35562218--35562267	24	2.1	24	84	0	64	4	30	8	58	1.45
35564431--35564469	21	1.9	21	89	5	62	66	7	12	12	1.43
35576177--35576882	235	3.0	235	99	0	1403	46	15	17	19	1.84
35577830--35577888	26	2.3	26	78	0	64	28	18	20	32	1.96
35588013--35588083	24	2.9	25	85	8	92	35	28	18	18	1.94
35588038--35588088	24	2.1	24	96	0	93	31	23	21	23	1.98
35592668--35592731	24	2.6	24	85	2	83	34	21	23	20	1.97
35594480--35594729	37	6.8	37	92	0	401	14	17	30	37	1.89
35613342--35613517	37	4.8	37	87	0	235	15	15	30	38	1.89
35613369--35613469	21	5.3	20	65	22	56	12	16	33	36	1.87
35617184--35617250	21	3.4	21	68	19	63	11	17	34	35	1.87
35617161--35617288	37	3.6	37	85	7	162	16	17	32	34	1.92
35620943--35621118	37	4.8	37	87	0	244	14	15	31	37	1.89
35620966--35621070	21	5.5	21	63	21	68	13	17	33	36	1.88
35624769--35624935	37	4.6	37	84	1	212	13	15	31	39	1.87
35627635--35627678	22	2.0	22	90	0	70	18	27	20	34	1.96
35627640--35627689	22	2.3	22	89	0	73	22	28	20	30	1.98
35629932--35629985	27	2.0	28	82	10	67	3	35	3	57	1.34
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
35639494--35639523	15	2.0	15	93	0	51	36	33	10	20	1.86
35644479--35644517	17	2.3	17	95	0	69	56	12	17	12	1.67
35644910--35644954	15	3.2	15	78	18	51	2	35	0	62	1.08
35666625--35666654	15	1.9	16	93	6	53	83	0	16	0	0.65
35670982--35671024	22	2.0	22	81	9	52	34	0	13	51	1.42
35688345--35688379	12	2.9	12	91	0	52	17	5	0	77	0.96
35688345--35688379	17	2.1	17	89	10	54	17	5	0	77	0.96
35693554--35693612	21	2.8	21	78	0	64	28	15	22	33	1.94
35702778--35702817	21	1.9	21	100	0	80	30	17	20	32	1.95
35706499--35706541	22	1.9	23	90	4	70	60	13	6	18	1.55

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135