genome.fa.s10.2.7.7.80.10.50.1000.117.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  117  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39206494--39206574	17	4.8	16	79	8	81	55	1	1	41	1.15
39206494--39206555	11	5.4	12	72	18	60	56	0	1	41	1.09
39206827--39207417	92	6.4	92	90	1	841	33	18	15	32	1.93
39207417--39207717	50	5.9	50	71	10	207	11	25	22	40	1.88
39207417--39207717	101	3.0	100	86	2	413	11	25	22	40	1.88
39208876--39208935	7	8.3	7	80	12	68	1	16	0	81	0.77
39208871--39208932	16	4.2	15	80	12	74	1	20	0	77	0.85
39208875--39208932	21	2.6	22	79	15	75	1	18	0	79	0.82
39208891--39208940	20	2.5	20	81	9	66	2	16	0	82	0.77
39214435--39214713	144	1.9	145	83	3	366	36	7	25	30	1.84
39214752--39214841	29	3.1	29	86	1	117	34	4	23	37	1.75
39216185--39216219	12	2.9	12	91	0	52	48	0	0	51	1.00
39216328--39216369	21	2.0	21	85	4	57	38	14	21	26	1.91
39216809--39216888	6	14.0	6	69	19	55	52	1	1	45	1.16
39216826--39216881	11	5.0	11	82	4	67	55	1	1	41	1.21
39216809--39216890	17	4.8	17	80	4	85	52	1	1	45	1.16
39220419--39220467	15	3.4	14	80	8	53	48	14	0	36	1.44
39221111--39221140	2	15.0	2	100	0	60	50	0	0	50	1.00
39221314--39221367	25	2.2	25	81	12	67	37	11	3	48	1.57
39236499--39236553	22	2.5	22	87	3	74	27	0	10	61	1.29
39236852--39236881	11	2.7	11	94	0	51	33	0	3	63	1.11
39237567--39237609	9	4.9	8	86	13	50	32	0	0	67	0.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39237571--39237614	17	2.6	18	86	13	67	36	0	0	63	0.95
39237557--39237589	12	3.0	11	87	12	50	42	0	0	57	0.98
39242807--39242853	21	2.3	21	85	7	62	78	4	8	8	1.07
39243410--39243629	29	7.8	29	65	27	98	35	30	2	31	1.72
39243433--39243649	58	3.9	52	79	12	170	35	31	1	31	1.69
39243523--39243629	31	3.6	30	67	20	82	33	29	3	32	1.75
39243577--39243674	30	3.3	30	67	12	85	33	28	2	35	1.69
39243485--39243661	59	3.0	59	85	4	259	34	30	2	32	1.72
39245901--39246066	89	1.8	90	81	10	205	48	12	14	24	1.78
39245939--39246076	31	4.6	29	72	17	102	47	10	14	26	1.77
39251413--39251698	29	9.7	28	65	15	123	32	4	30	32	1.79
39251413--39251728	59	5.4	58	88	2	425	33	4	29	32	1.77
39251686--39251757	31	2.5	28	82	10	90	40	0	22	37	1.54
39251686--39251882	30	6.6	29	82	8	141	38	3	23	35	1.70
39251722--39251911	30	6.3	30	88	1	256	36	4	22	37	1.74
39252000--39252314	158	2.0	162	86	6	446	46	12	15	24	1.81
39253794--39253882	6	15.0	6	76	18	89	51	0	3	44	1.18
39253815--39253865	11	4.8	11	76	9	52	52	0	5	41	1.25
39253806--39253882	37	2.0	38	82	9	95	53	0	3	42	1.19
39253794--39253882	17	5.4	16	81	14	101	51	0	3	44	1.18
39254191--39254617	37	12.4	31	71	16	147	26	21	18	33	1.96
39254182--39254771	69	8.4	70	74	13	423	26	21	18	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39254223--39254763	106	5.1	106	90	3	842	26	21	18	33	1.97
39254500--39254763	38	7.3	38	73	18	233	27	21	17	32	1.96
39254223--39254763	213	2.6	208	92	2	888	26	21	18	33	1.97
39254621--39254771	40	4.1	39	73	20	117	28	21	19	30	1.98
39266880--39267253	58	6.4	59	85	3	481	33	4	28	33	1.78
39266887--39267222	30	11.5	30	66	19	142	33	4	27	33	1.77
39266880--39267253	117	3.2	117	86	2	493	33	4	28	33	1.78
39267148--39267391	30	8.2	30	78	11	147	35	2	25	35	1.71
39267087--39267332	30	8.4	28	74	13	113	33	2	28	35	1.71
39266881--39267315	58	7.5	55	81	8	383	34	3	28	33	1.76
39266881--39267312	117	3.7	111	82	9	431	33	3	28	34	1.76
39267203--39267400	30	6.6	30	85	5	233	36	2	23	36	1.69
39267223--39267400	90	2.0	90	87	2	259	37	2	23	37	1.69
39267492--39267806	157	2.0	161	86	6	453	46	12	15	25	1.80
39267522--39267825	158	1.9	160	84	8	404	48	11	15	23	1.78
39269284--39269405	6	21.0	6	75	20	118	52	0	3	44	1.17
39269305--39269388	11	7.8	11	70	15	59	53	0	4	41	1.22
39269284--39269405	33	3.7	33	89	7	185	52	0	3	44	1.17
39269284--39269405	17	7.4	16	85	11	158	52	0	3	44	1.17
39282100--39282130	3	10.3	3	100	0	62	67	0	0	32	0.91
39282574--39282606	11	3.0	11	86	13	50	21	0	6	72	1.05
39286669--39286712	21	2.2	20	83	4	52	79	4	0	15	0.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39286658--39286716	14	3.9	15	77	18	59	76	3	0	20	0.93
39286851--39286912	30	2.1	30	93	0	106	54	9	6	29	1.57
39291924--39291951	14	2.0	14	100	0	56	28	28	7	35	1.84
39298180--39298219	9	4.2	9	81	12	53	20	2	0	77	0.88
39298715--39298793	29	2.7	29	77	12	74	44	0	2	53	1.14
39298998--39299053	19	2.9	19	76	12	60	35	0	0	64	0.94
39300419--39300475	30	1.9	30	89	7	89	49	5	0	45	1.24
39300418--39300485	31	2.3	30	82	5	84	51	4	0	44	1.21
39300833--39300902	23	3.0	23	72	2	59	45	14	7	32	1.72
39305299--39305340	17	2.4	17	88	4	57	23	28	0	47	1.52
39305570--39305605	17	2.1	17	100	0	72	33	11	22	33	1.89
39307923--39307994	33	2.2	33	97	0	135	36	5	27	30	1.80
39310689--39310739	24	2.1	24	86	13	70	15	29	3	50	1.62
39310859--39310884	8	3.2	8	100	0	52	26	23	0	50	1.50
39326301--39326361	30	2.0	30	93	6	106	42	14	16	26	1.87
39329284--39329320	7	5.4	7	90	3	58	10	2	37	48	1.52
39337935--39337992	19	2.8	20	69	10	55	27	1	12	58	1.43
39351895--39352089	97	2.0	97	90	2	311	45	8	17	27	1.78
39355612--39355659	18	2.6	18	75	15	53	45	2	0	52	1.12
39355635--39355674	21	1.9	21	89	0	62	42	2	0	55	1.13
39360071--39360104	14	2.4	14	90	0	50	58	2	2	35	1.28
39360091--39360133	18	2.3	19	80	4	52	41	0	2	55	1.12
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39361471--39361511	21	2.0	21	85	0	55	51	4	0	43	1.23
39373984--39374060	40	1.9	40	83	2	100	42	15	20	20	1.88
39375514--39375669	41	3.8	41	78	6	154	33	18	26	21	1.97
39375512--39375672	82	2.0	82	83	0	205	33	18	26	21	1.96
39375762--39375844	27	3.1	27	72	8	89	56	4	1	37	1.28
39375782--39375823	19	2.2	19	95	0	75	61	0	0	38	0.96
39378252--39378295	15	2.6	16	86	13	54	27	0	25	47	1.52
39378348--39378515	43	3.9	42	71	14	119	32	18	20	29	1.96
39390426--39390475	25	2.0	24	88	3	73	26	4	10	60	1.47
39390406--39390512	56	1.9	56	80	3	126	25	11	9	54	1.65
39390974--39391037	31	2.1	31	87	0	92	35	14	9	40	1.78
39397703--39397751	24	2.0	24	84	4	62	46	4	16	32	1.65
39398714--39399070	29	12.3	29	75	12	247	33	4	24	37	1.75
39398761--39399070	59	5.3	58	76	14	232	33	3	24	38	1.73
39398714--39399099	88	4.4	88	80	9	350	33	3	24	37	1.74
39398714--39399099	58	6.6	55	75	15	275	33	3	24	37	1.74
39398760--39399135	29	13.0	28	75	15	229	34	3	24	38	1.72
39400931--39401026	11	8.6	11	68	14	54	57	6	1	35	1.31
39400934--39401023	17	5.4	17	79	2	101	55	6	1	36	1.33
39403128--39403186	24	2.5	24	85	0	82	50	8	11	28	1.68
39403140--39403190	24	2.1	24	92	0	84	58	5	9	25	1.52
39405117--39405167	24	2.1	24	89	7	77	60	5	7	25	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39407461--39407495	18	1.9	18	100	0	70	62	14	0	22	1.31
39408855--39408962	38	2.8	38	91	4	164	55	5	3	35	1.41
39408858--39408978	38	3.2	37	85	9	147	53	4	4	36	1.44
39410425--39410489	20	3.0	21	80	17	80	9	6	15	69	1.35
39410692--39410727	17	2.1	18	89	5	56	16	0	11	72	1.12
39413811--39413855	2	22.5	2	100	0	90	0	48	0	51	1.00
39421506--39421678	95	1.8	94	95	2	312	39	1	13	45	1.53
39421864--39421913	16	3.2	16	71	21	52	60	6	0	34	1.21
39421997--39422053	29	2.0	29	85	0	78	35	3	8	52	1.50
39423210--39423294	43	2.0	43	83	4	109	30	12	10	45	1.76

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135