genome.fa.s10.2.7.7.80.10.50.1000.133.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  133  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42911625--42911663	12	3.5	11	86	10	53	0	64	0	35	0.94
42911631--42911662	6	5.3	6	96	0	55	0	65	0	34	0.93
42925153--42925207	16	3.2	17	74	7	58	49	1	0	49	1.11
42925373--42925496	10	12.5	10	68	17	55	35	0	3	60	1.19
42925413--42925481	19	3.5	19	70	16	50	34	0	4	60	1.16
42925376--42925491	37	3.0	36	78	14	108	34	0	3	61	1.19
42925438--42925496	19	3.2	19	75	15	61	35	0	1	62	1.05
42931681--42931706	12	2.2	12	100	0	52	26	26	15	30	1.96
42938387--42938435	15	3.3	15	85	0	71	30	26	12	30	1.92
42938424--42938482	24	2.5	24	94	0	100	25	37	15	22	1.93
42942567--42942634	25	2.7	26	88	6	113	48	27	0	23	1.51
42942695--42942738	21	2.2	20	87	4	61	18	22	29	29	1.97
42943792--42943831	3	13.3	3	100	0	80	32	0	0	67	0.91
42945147--42945184	18	2.1	18	90	9	60	23	10	15	50	1.75
42945230--42945276	23	2.0	24	87	4	69	38	17	10	34	1.84
42946361--42946395	2	17.5	2	87	0	52	45	0	54	0	0.99
42969288--42969320	17	1.9	17	88	11	50	24	33	6	36	1.80
42970397--42970490	47	2.0	47	100	0	188	40	36	4	19	1.71
42976540--42976596	31	1.9	30	82	13	73	56	1	1	40	1.20
42976613--42976679	16	4.2	16	74	11	57	55	0	0	44	0.99
42976695--42976759	15	4.0	16	71	21	55	53	3	0	43	1.16
42982513--42982543	6	5.2	6	100	0	62	32	51	0	16	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42986322--42986358	20	1.9	20	88	5	58	37	8	0	54	1.30
42987031--42987093	32	2.0	31	82	14	76	63	0	1	34	1.04
42987982--42988017	16	2.3	16	90	4	56	55	0	5	38	1.23
43000439--43000471	10	3.3	10	91	0	57	45	33	12	9	1.73
43005325--43005386	24	2.6	24	80	7	63	45	0	1	53	1.10
43005338--43005386	25	2.0	25	84	4	64	46	0	0	53	1.00
43023801--43023900	48	2.1	48	90	3	157	22	15	5	58	1.56
43023801--43023918	48	2.5	47	86	6	132	22	14	5	57	1.58
43027559--43027583	3	8.3	3	100	0	50	32	0	0	68	0.90
43027671--43027702	17	1.9	17	93	6	57	53	0	18	28	1.45
43031578--43031606	3	10.0	3	92	7	51	31	0	0	68	0.89
43037897--43038098	91	2.2	90	84	7	241	37	16	10	35	1.83
43037949--43038118	91	1.9	90	85	4	236	37	19	10	32	1.86
43038122--43038159	20	1.9	20	88	0	58	31	15	15	36	1.90
43038446--43038480	15	2.3	15	90	0	52	5	17	8	68	1.35
43043047--43043119	29	2.6	27	79	14	76	67	0	2	30	1.05
43043086--43043130	18	2.4	19	82	14	58	73	2	2	22	1.05
43043244--43043418	89	2.0	88	82	1	215	41	9	12	37	1.74
43050677--43050727	21	2.5	20	75	12	57	39	0	1	58	1.09
43051796--43051820	13	1.9	13	100	0	50	32	0	20	48	1.50
43052570--43052629	28	2.1	28	87	0	84	26	11	31	30	1.92
43056752--43056797	24	1.9	24	86	0	65	8	6	17	67	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43056746--43056804	24	2.7	21	78	14	64	6	6	20	66	1.39
43056740--43056806	12	5.8	12	72	10	50	5	5	20	67	1.34
43056746--43056812	21	3.0	21	77	12	71	7	7	17	67	1.39
43064728--43064854	41	3.2	41	93	5	210	22	19	13	44	1.85
43069840--43069933	30	3.1	30	84	0	116	38	20	4	37	1.72
43075846--43076129	112	2.6	111	85	5	355	29	21	10	38	1.87
43076667--43077010	49	7.0	49	72	7	257	35	16	32	15	1.90
43076587--43077345	99	7.7	98	80	6	548	35	15	29	18	1.93
43076774--43077359	49	11.9	49	69	9	156	36	15	28	20	1.92
43077584--43078067	39	12.2	40	77	10	406	30	25	17	26	1.97
43077597--43078051	81	5.7	80	80	7	441	30	25	18	25	1.98
43079863--43079987	23	5.4	22	90	5	151	11	24	23	41	1.86
43079884--43080033	46	3.2	46	85	9	173	12	23	22	42	1.87
43079887--43080033	69	2.1	70	84	12	187	12	23	21	42	1.87
43080577--43080698	42	2.8	42	86	3	163	31	24	18	24	1.98
43082506--43082693	30	6.3	30	78	4	137	36	25	3	34	1.74
43082495--43082693	90	2.2	90	84	3	249	35	25	3	35	1.73
43084982--43085083	44	2.3	44	82	0	132	15	29	20	34	1.94
43085201--43085241	18	2.3	18	86	0	55	21	29	17	31	1.96
43089006--43089043	2	19.5	2	94	5	69	50	0	0	50	1.00
43089043--43089073	2	15.5	2	100	0	62	51	0	48	0	1.00
43091759--43091811	27	2.0	27	84	0	70	32	32	22	13	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43095233--43095281	24	2.0	24	84	7	64	53	0	0	46	1.00
43095947--43095977	6	5.2	6	92	0	53	64	16	3	16	1.42
43096352--43096420	27	2.6	27	90	4	104	27	36	18	17	1.94
43099309--43099359	19	2.7	19	81	3	59	35	0	0	64	0.94
43100332--43100370	4	9.8	4	94	0	69	25	0	25	48	1.51
43101415--43101479	29	2.2	29	86	8	87	49	7	10	32	1.66
43101950--43102000	24	2.1	24	85	7	68	15	3	1	78	0.99
43110180--43110239	24	2.5	24	100	0	120	21	11	28	38	1.89
43114214--43114438	111	2.0	111	99	0	441	37	12	8	41	1.74
43115035--43115094	24	2.7	22	78	14	61	41	0	1	56	1.09
43122794--43122828	18	1.9	18	88	0	52	54	0	0	45	0.99
43122792--43122846	21	2.6	21	80	11	60	50	0	0	49	1.00
43130890--43131018	55	2.4	54	80	5	134	24	6	14	53	1.66
43133821--43133878	30	1.9	31	86	10	84	29	0	6	63	1.20
43133853--43133893	18	2.2	19	87	12	59	26	0	4	68	1.10
43134642--43134685	16	2.8	16	83	16	56	31	0	0	68	0.90
43138912--43138953	21	2.0	21	90	0	66	33	21	11	33	1.90
43143100--43143142	21	2.0	21	81	0	50	41	9	11	37	1.74
43145077--43145145	32	2.2	32	91	0	111	43	10	4	42	1.58
43146784--43146817	17	2.0	17	100	0	68	11	35	5	47	1.65
43174534--43174558	12	2.1	12	100	0	50	48	12	0	40	1.40
43184407--43184446	21	1.9	21	89	0	62	50	2	15	32	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43184834--43184876	20	2.0	22	86	8	63	60	0	2	37	1.10
43184880--43184933	24	2.2	24	96	0	99	57	3	0	38	1.17
43185478--43185514	5	7.0	5	96	3	56	24	0	0	75	0.80
43189239--43189299	24	2.5	24	83	0	77	50	8	11	29	1.67
43189470--43189497	3	9.3	3	100	0	56	32	0	0	67	0.91
43193100--43193132	16	2.1	16	100	0	66	48	0	18	33	1.48
43193419--43193529	56	2.0	56	85	0	150	34	6	11	47	1.65
43193571--43193595	2	12.5	2	100	0	50	52	0	0	48	1.00
43196461--43196523	30	2.1	30	87	3	90	63	3	3	30	1.25
43196776--43196892	28	4.2	26	70	18	76	32	2	1	63	1.18
43196776--43196892	9	12.7	9	71	14	78	32	2	1	63	1.18
43199433--43199509	37	2.1	37	95	0	136	49	11	31	7	1.68
43205233--43205296	24	2.8	22	80	15	76	43	3	1	51	1.26
43206880--43207355	30	16.1	29	77	10	333	33	24	3	38	1.73
43206880--43207331	89	5.1	88	78	8	405	34	24	3	38	1.72
43206922--43207331	119	3.5	117	80	8	379	34	23	3	38	1.72
43207296--43207355	29	2.1	29	81	12	70	30	23	6	40	1.80
43210398--43210711	59	5.3	59	89	1	452	35	7	27	30	1.83
43210693--43210771	30	2.6	30	95	0	140	35	2	24	37	1.69
43210868--43211179	161	1.9	162	85	2	432	45	11	16	25	1.82
43212703--43212784	20	4.3	19	73	14	62	43	1	1	53	1.16
43212703--43212811	6	18.0	6	74	15	82	47	1	0	49	1.18
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
43212747--43212796	25	2.0	25	88	0	73	54	4	0	42	1.19
43212740--43212803	31	2.1	31	91	5	103	53	3	0	43	1.16
43212718--43212811	42	2.3	43	83	5	113	50	2	0	47	1.13
43212741--43212811	17	4.4	16	79	16	85	54	2	0	42	1.14
43213364--43213428	33	2.0	33	84	0	85	33	15	18	32	1.92
43214555--43214621	35	1.9	34	93	3	116	26	7	2	62	1.36
43216671--43216917	43	5.8	43	81	4	268	27	17	29	25	1.97
43216671--43216917	85	2.9	85	82	5	284	27	17	29	25	1.97
43217975--43218052	37	2.1	37	92	0	129	30	1	25	42	1.63
43218012--43218235	30	7.6	29	72	11	143	34	4	21	39	1.74

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135