genome.fa.s10.2.7.7.80.10.50.1000.77.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  77  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25801791--25801833	13	3.4	13	87	6	61	74	0	4	20	1.00
25808580--25808618	17	2.3	17	86	8	53	15	12	23	48	1.79
25808608--25808703	41	2.3	41	96	0	174	29	6	28	36	1.81
25811618--25811656	6	6.5	6	100	0	78	51	48	0	0	1.00
25815936--25815991	21	2.7	21	78	10	69	35	21	8	33	1.85
25817452--25817483	16	2.0	16	93	0	55	25	18	3	53	1.59
25818998--25819038	15	2.8	15	85	10	50	29	12	0	58	1.34
25820154--25820187	16	2.1	16	88	0	50	26	8	8	55	1.59
25825530--25825604	37	2.1	36	82	12	91	42	1	2	53	1.23
25830674--25830706	13	2.4	14	90	10	59	42	0	0	57	0.98
25831789--25832234	194	2.3	195	82	4	517	28	19	26	25	1.99
25832950--25833023	21	3.5	21	74	7	60	31	12	25	31	1.92
25838043--25838102	21	2.9	21	80	5	68	26	11	23	38	1.89
25841773--25841812	17	2.3	18	86	4	55	50	0	5	45	1.23
25843012--25843386	41	9.2	40	85	3	462	21	26	32	19	1.97
25843375--25843485	40	2.8	40	92	0	177	18	24	23	33	1.97
25845584--25845641	31	1.9	29	82	6	71	39	3	5	51	1.41
25846342--25846385	18	2.4	18	88	0	61	63	4	6	25	1.38
25857730--25857763	9	3.7	9	88	4	50	76	0	2	20	0.92
25859440--25860917	39	36.3	40	69	13	821	24	17	26	31	1.97
25859465--25860922	81	18.0	81	86	2	1913	24	17	26	31	1.97
25862071--25862141	26	2.7	26	82	4	81	30	23	18	26	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25862164--25862234	28	2.5	28	86	6	108	32	26	18	22	1.97
25866980--25867119	25	5.5	25	81	4	145	32	23	18	25	1.97
25866980--25867119	52	2.7	50	85	3	172	32	23	18	25	1.97
25867343--25867377	18	1.9	18	88	0	52	28	20	11	40	1.87
25868993--25869199	39	5.2	38	72	15	166	24	15	28	31	1.95
25868965--25869192	42	5.6	41	72	10	189	24	14	30	30	1.95
25868963--25869229	81	3.3	81	90	1	401	24	14	29	30	1.95
25869042--25869229	42	4.7	38	68	20	125	23	14	30	31	1.94
25869241--25870036	95	8.2	95	76	10	628	26	18	18	36	1.94
25869282--25869863	98	5.9	97	71	12	402	27	18	18	35	1.94
25869241--25869957	196	3.7	196	87	2	1008	27	18	18	35	1.94
25869837--25869999	48	3.4	48	74	15	185	29	19	17	33	1.95
25870618--25870657	20	2.0	20	85	0	53	47	10	10	32	1.70
25871812--25871850	14	2.8	14	88	7	53	7	0	38	53	1.30
25873115--25873147	11	2.8	12	86	9	50	36	0	0	63	0.95
25873790--25873838	3	16.3	3	100	0	98	32	0	0	67	0.91
25874358--25874525	66	2.5	67	87	1	230	29	18	14	37	1.91
25876797--25876868	30	2.4	31	86	6	94	48	18	12	20	1.80
25876944--25876998	27	2.1	26	89	3	83	20	36	1	41	1.63
25877835--25877901	30	2.2	31	86	7	93	19	13	17	49	1.80
25880527--25880594	34	2.0	34	100	0	136	38	17	8	35	1.81
25886713--25886931	26	8.6	26	80	4	241	19	17	30	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25886725--25886914	102	1.9	102	89	2	301	18	18	31	32	1.95
25886725--25886927	51	4.0	51	85	3	257	19	18	30	32	1.95
25886717--25886931	76	2.8	77	80	3	274	19	17	30	33	1.95
25890136--25890228	24	3.8	24	84	7	107	25	19	22	32	1.97
25890136--25890228	49	1.9	49	86	2	134	25	19	22	32	1.97
25897192--25897366	25	6.9	25	74	5	136	23	17	28	30	1.97
25897162--25897350	51	3.7	51	78	6	186	24	17	26	31	1.97
25902458--25902495	19	2.0	19	100	0	76	42	5	15	36	1.70
25904231--25904264	17	1.9	17	88	5	50	38	0	23	38	1.55
25905136--25905356	79	2.8	79	84	4	266	24	18	26	30	1.98
25916916--25917166	69	3.6	69	75	4	166	31	23	16	29	1.96
25916963--25917187	69	3.3	68	80	2	234	29	24	16	29	1.96
25923119--25923247	28	4.5	28	79	10	125	15	1	30	52	1.52
25924264--25924408	57	2.5	58	85	2	177	21	5	45	27	1.74
25925721--25925783	31	2.0	31	87	0	90	23	11	6	58	1.55
25926713--25927014	157	1.9	156	83	4	392	37	18	14	29	1.90
25928946--25928989	21	2.2	20	83	4	52	52	9	0	38	1.33
25929248--25929281	16	2.0	18	88	11	54	41	0	0	58	0.98
25930138--25930197	18	3.5	18	73	11	63	55	1	1	41	1.20
25930179--25930237	23	2.6	22	80	15	75	44	1	8	45	1.44
25930881--25930910	15	2.0	15	100	0	60	66	0	13	20	1.24
25932849--25932896	23	2.3	20	78	21	62	31	16	6	45	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25932855--25932899	23	2.0	23	100	0	90	31	13	6	48	1.68
25934180--25934204	13	1.9	13	100	0	50	28	8	8	56	1.57
25934652--25934753	21	4.7	22	76	12	88	40	0	0	58	1.04
25934668--25934731	9	6.8	9	76	16	51	39	1	0	59	1.07
25934660--25934722	20	3.2	20	84	8	85	36	1	0	61	1.05
25934655--25934735	21	3.8	20	79	12	90	38	1	0	60	1.05
25934651--25934753	30	3.4	31	74	18	101	39	0	0	59	1.04
25934758--25934792	15	2.3	15	95	0	61	77	0	0	22	0.78
25934909--25934947	21	1.9	21	94	5	71	30	25	10	33	1.89
25937550--25937574	12	2.1	12	100	0	50	44	0	8	48	1.32
25942247--25942299	27	2.0	27	84	0	70	26	24	11	37	1.89
25942502--25942527	13	2.0	13	100	0	52	46	15	0	38	1.46
25966398--25966454	28	2.0	29	86	3	80	35	10	24	29	1.89
25971253--25971440	45	4.2	45	85	0	241	27	17	26	29	1.97
25971253--25971436	90	2.0	90	89	0	278	27	17	26	29	1.97
25971369--25971450	24	3.5	24	70	9	71	28	13	28	30	1.94
25976218--25976327	45	2.4	45	86	0	157	26	17	23	32	1.96
25985282--25985327	25	1.9	25	86	8	69	32	4	6	56	1.45
25986659--25986683	2	12.5	2	100	0	50	48	0	0	52	1.00
25987117--25987190	35	2.1	35	94	0	130	43	2	21	32	1.67
25990283--25990333	21	2.4	22	81	15	63	27	29	15	27	1.96
25998573--25998616	23	2.0	22	86	4	61	45	15	0	38	1.47
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25999356--25999381	5	5.2	5	100	0	52	0	19	0	80	0.71
26005491--26005526	5	7.2	5	100	0	72	0	19	0	80	0.71
26022508--26022538	15	2.1	15	93	0	53	6	16	0	77	0.97
26027797--26028170	195	1.9	194	88	1	570	28	17	26	26	1.98
26027927--26028608	339	2.0	339	91	0	1112	30	19	23	27	1.98
26037511--26037557	21	2.2	21	85	7	60	38	21	12	27	1.90
26040431--26040478	18	2.7	18	80	6	53	31	33	16	18	1.94
26043978--26044081	36	2.9	36	89	0	163	33	15	25	25	1.95
26044746--26044817	21	3.4	21	86	0	99	29	9	29	31	1.89
26051263--26051363	36	2.8	36	87	0	139	35	14	24	24	1.94
26052033--26052095	21	3.0	21	85	0	72	28	12	26	31	1.93
26052045--26052102	21	2.8	21	86	0	80	29	13	25	31	1.94
26052809--26052847	20	2.0	20	94	0	69	64	0	33	2	1.08
26064316--26064376	29	2.0	30	81	12	72	44	26	3	26	1.69
26065496--26065545	21	2.3	22	86	3	66	58	6	20	16	1.59
26070528--26070570	2	21.5	2	100	0	86	51	0	0	48	1.00
26073938--26073982	22	2.0	22	100	0	90	35	8	31	24	1.86
26084619--26084656	19	2.0	20	89	5	60	28	5	2	63	1.30
26097712--26097813	49	2.1	50	98	1	197	34	21	7	36	1.83
26098172--26098263	44	2.1	44	100	0	184	43	21	11	22	1.85
26100482--26100506	12	2.1	12	100	0	50	48	16	20	16	1.82
26101108--26101552	196	2.3	196	88	1	660	26	26	18	28	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26106957--26107003	20	2.3	21	89	10	71	17	2	6	74	1.12
26106963--26107009	18	2.5	18	86	13	60	14	2	6	76	1.08
26106963--26107009	19	2.5	18	80	10	58	14	2	6	76	1.08
26109900--26109930	14	2.1	15	94	5	55	51	0	22	25	1.48
26110746--26110784	16	2.8	13	79	20	51	28	20	10	41	1.85
26110794--26110844	22	2.3	22	96	3	93	74	3	0	21	0.98
26110800--26110844	12	3.8	13	75	24	55	73	4	0	22	1.01
26112884--26112934	25	2.0	25	88	0	75	43	9	29	17	1.81
26115942--26116623	50	13.7	50	80	1	625	36	15	23	23	1.94
26117708--26117745	12	3.2	12	85	10	51	21	2	5	71	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135