genome.fa.s10.2.7.7.80.10.50.1000.14.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  14  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6248932--6248979	13	3.6	13	75	5	51	29	27	0	43	1.55
6250405--6250484	23	3.5	22	84	3	97	37	28	21	12	1.90
6250473--6250549	23	3.3	23	88	0	109	44	22	23	10	1.83
6252906--6252933	2	14.0	2	100	0	56	50	0	0	50	1.00
6253871--6254179	154	2.0	154	98	0	591	29	19	22	28	1.98
6254847--6254906	21	2.9	21	82	0	75	31	15	23	30	1.95
6255580--6255658	25	3.2	25	96	1	142	40	16	31	11	1.84
6255654--6255708	22	2.4	23	81	6	67	38	25	23	12	1.90
6255771--6255818	24	1.9	26	84	16	66	31	22	0	45	1.53
6265536--6265584	19	2.5	20	93	6	91	51	0	0	48	1.00
6265549--6265601	27	2.0	25	89	10	79	56	0	0	43	0.99
6268707--6268791	31	2.7	32	85	7	111	44	0	30	24	1.54
6269857--6269920	19	3.4	18	74	23	60	59	3	7	29	1.41
6269833--6269920	38	2.4	37	80	16	101	62	3	5	28	1.34
6270084--6270116	15	2.1	16	88	5	50	24	0	0	75	0.80
6270342--6270525	99	1.8	101	82	4	239	44	7	11	37	1.68
6275226--6275259	13	2.5	13	90	4	50	88	2	8	0	0.62
6276033--6276071	18	2.2	18	86	9	53	33	0	7	58	1.26
6281993--6282026	17	1.9	18	88	5	52	61	2	0	35	1.11
6285605--6285653	18	2.7	19	90	9	84	48	4	4	42	1.40
6287135--6287182	21	2.3	21	100	0	96	4	33	31	31	1.77
6292521--6292608	44	2.0	44	100	0	176	50	13	13	22	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6311184--6311215	16	1.9	17	93	6	57	40	0	3	56	1.15
6316753--6317129	188	2.0	188	97	0	709	33	15	10	40	1.80
6319221--6319262	18	2.3	18	80	11	50	45	0	0	54	0.99
6319227--6319262	18	1.9	19	88	5	56	41	0	0	58	0.98
6330436--6330476	21	1.9	22	85	5	57	26	2	7	63	1.33
6341190--6341218	13	2.1	14	93	6	51	27	0	3	68	1.05
6341483--6341527	7	6.1	7	80	10	54	42	2	13	42	1.56
6344572--6344647	29	2.7	29	82	10	77	51	7	2	38	1.45
6344627--6344667	8	5.2	8	80	16	50	60	0	0	39	0.96
6347315--6347340	2	13.0	2	100	0	52	50	0	0	50	1.00
6350616--6350666	20	2.5	21	81	6	61	43	3	1	50	1.31
6352913--6352959	19	2.5	19	76	10	51	70	4	2	23	1.16
6352931--6352980	21	2.3	22	86	3	66	62	4	2	32	1.25
6355604--6355643	20	2.0	20	90	0	62	40	5	0	55	1.22
6367247--6367318	30	2.4	30	83	0	90	52	2	1	43	1.24
6373170--6373204	3	11.7	3	87	0	52	31	5	0	62	1.18
6373170--6373202	12	2.8	12	100	0	66	33	6	0	60	1.21
6409596--6409632	12	3.0	13	84	11	51	64	0	0	35	0.94
6410021--6410047	13	2.1	13	100	0	54	77	0	0	22	0.76
6410946--6411003	29	2.0	29	86	0	80	56	24	5	13	1.57
6413451--6413504	26	2.1	26	85	0	72	42	11	20	25	1.85
6436957--6437002	24	1.9	24	86	0	65	41	26	6	26	1.80
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6438675--6438705	13	2.4	13	94	0	53	35	12	29	22	1.91
6439466--6439501	3	12.0	3	87	0	54	27	33	0	38	1.57
6464343--6464394	26	2.0	26	84	0	68	50	19	11	19	1.77
6465783--6465834	23	2.1	26	86	10	74	67	0	3	28	1.08
6465931--6465969	19	2.0	21	90	10	64	33	12	15	38	1.85
6466435--6466501	30	2.3	29	79	7	73	31	2	8	56	1.45
6477746--6477841	48	2.0	48	85	4	131	20	23	19	35	1.96
6477868--6478001	58	2.3	58	81	7	148	29	23	17	29	1.97
6478222--6478311	35	2.5	36	87	3	128	30	15	8	45	1.77
6481042--6481091	15	3.4	15	83	2	66	22	12	42	24	1.87
6481239--6481334	17	5.6	17	76	2	93	56	8	1	34	1.36
6481232--6481334	35	3.0	35	71	4	93	54	8	0	35	1.38
6490599--6490646	14	3.5	14	82	5	71	29	0	25	45	1.53
6491144--6491188	23	2.0	22	86	4	63	42	17	0	40	1.50
6495744--6495785	20	2.1	20	86	0	57	64	4	4	26	1.33
6496795--6496868	29	2.5	30	84	4	96	48	1	4	45	1.29
6505333--6505369	18	2.1	18	100	0	74	35	21	5	37	1.77
6507479--6507508	2	15.0	2	100	0	60	50	0	0	50	1.00
6512663--6512694	16	2.0	16	93	0	55	37	9	25	28	1.87
6523747--6523801	26	2.1	26	100	0	110	30	32	9	27	1.88
6524576--6524725	23	6.5	23	78	6	142	44	21	22	11	1.84
6524576--6524716	46	3.0	46	85	9	180	44	21	22	11	1.84
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6524577--6524717	48	3.0	47	86	7	164	43	21	22	12	1.85
6531009--6531132	23	5.3	23	74	7	115	43	20	23	12	1.85
6530958--6531132	71	2.5	71	81	4	176	42	19	25	13	1.87
6548631--6548767	23	6.0	22	80	9	134	43	21	22	12	1.86
6548675--6548801	23	5.4	23	85	5	157	44	22	22	11	1.84
6548650--6548801	48	3.2	43	77	15	135	42	21	24	11	1.85
6548631--6548777	69	2.1	68	86	12	201	43	21	23	12	1.86
6557827--6557866	21	1.9	21	84	0	53	35	2	2	60	1.24
6557992--6558042	17	3.0	16	82	8	57	49	1	11	37	1.51
6560263--6560295	11	3.0	11	90	0	57	63	3	0	33	1.10
6563003--6563045	22	1.9	23	90	4	70	55	0	4	39	1.20
6563423--6563520	17	5.6	16	75	17	63	37	1	6	55	1.32
6563424--6563513	18	5.1	16	75	19	65	38	1	5	54	1.31
6563460--6563520	6	10.3	6	74	10	54	39	1	3	55	1.26
6563460--6563520	11	5.2	11	76	9	50	39	1	3	55	1.26
6564269--6564325	22	2.5	22	78	18	62	59	0	3	36	1.14
6564289--6564329	15	2.6	16	92	3	66	63	0	0	36	0.95
6565452--6565735	59	4.8	59	84	4	351	32	30	3	33	1.76
6565452--6565735	117	2.4	118	85	4	396	32	30	3	33	1.76
6565384--6565661	30	9.4	30	69	18	129	34	28	3	33	1.75
6573518--6573596	36	2.3	35	84	8	99	59	5	1	34	1.27
6573534--6573596	17	3.6	18	80	8	67	58	4	1	34	1.29
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6578942--6578967	3	8.7	3	100	0	52	65	0	0	34	0.93
6579691--6579732	21	2.0	21	85	0	57	33	0	4	61	1.17
6585458--6585575	30	4.0	30	79	5	105	35	24	1	38	1.66
6585447--6585663	29	7.4	28	73	12	125	34	25	2	38	1.69
6585497--6585638	58	2.4	59	80	8	146	36	26	1	35	1.66
6587822--6587911	25	3.5	26	74	18	80	62	2	0	35	1.08
6588096--6588148	27	1.9	28	88	11	83	56	7	0	35	1.28
6588095--6588157	28	2.2	29	81	10	78	50	6	0	42	1.27
6588433--6588471	3	13.0	3	94	0	69	64	0	2	33	1.08
6597675--6597874	100	2.0	100	98	0	382	41	11	13	34	1.79
6601755--6601873	48	2.5	46	84	8	143	12	22	21	43	1.86
6601747--6601922	71	2.5	71	82	4	196	12	23	20	43	1.86
6601747--6601873	23	5.4	23	78	7	130	11	22	21	44	1.85
6610033--6610080	21	2.2	22	85	3	62	45	0	6	47	1.27
6621018--6621056	17	2.3	17	82	13	53	69	0	0	30	0.89
6621021--6621056	16	2.2	17	90	5	56	72	0	0	27	0.85
6624880--6624993	23	5.0	22	79	10	106	11	24	23	40	1.88
6631077--6631154	32	2.3	35	89	6	117	50	3	2	43	1.34
6632765--6632838	7	10.6	7	98	0	139	1	14	25	58	1.45
6636565--6636627	25	2.4	27	86	5	85	42	0	6	50	1.27
6643268--6643293	13	2.0	13	100	0	52	30	0	38	30	1.58
6643293--6643341	6	7.5	6	80	15	53	69	0	2	28	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6643303--6643343	21	2.0	21	95	0	73	70	0	2	26	0.99
6645461--6645585	23	5.5	22	90	1	151	36	28	22	12	1.91
6645461--6645585	45	2.8	44	83	3	160	36	28	22	12	1.91
6651852--6651953	22	4.5	22	88	2	123	35	26	23	14	1.94
6655166--6655203	17	2.4	17	86	8	53	47	0	0	52	1.00
6659873--6659923	3	17.0	3	78	8	50	29	1	35	33	1.69
6662397--6662699	103	3.0	98	79	10	311	43	8	15	32	1.77
6662408--6662697	105	2.8	106	84	6	330	44	8	15	31	1.76
6662408--6662697	106	2.8	105	84	7	319	44	8	15	31	1.76
6671690--6671723	15	2.4	14	85	9	50	29	2	0	67	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135