genome.fa.s10.2.7.7.80.10.50.1000.22.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  22  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9346299--9346328	6	5.0	6	100	0	60	0	0	50	50	1.00
9346365--9346402	6	6.3	6	100	0	76	15	0	68	15	1.22
9346596--9346647	21	2.5	20	82	17	61	25	0	7	67	1.17
9346628--9346669	17	2.5	17	80	0	57	30	0	7	61	1.22
9348211--9348255	22	2.0	23	82	4	56	42	22	6	28	1.79
9351118--9351201	17	4.8	17	71	18	75	21	2	4	71	1.16
9352376--9352426	24	2.1	25	82	10	61	50	11	0	37	1.39
9352751--9352807	27	2.0	28	83	12	73	45	3	5	45	1.43
9353315--9353347	14	2.3	15	89	5	50	42	6	3	48	1.43
9358265--9358291	14	1.9	14	100	0	54	37	7	14	40	1.74
9377026--9377064	2	19.5	2	100	0	78	48	0	51	0	1.00
9378327--9378354	9	3.1	9	100	0	56	78	0	21	0	0.75
9380215--9380294	33	2.5	33	84	9	96	65	8	0	26	1.22
9380495--9380541	13	3.7	13	80	13	53	0	25	0	74	0.82
9380497--9380535	19	2.0	21	90	10	64	0	28	0	71	0.86
9390248--9390281	18	1.9	17	88	5	50	26	0	11	61	1.30
9396103--9396154	22	2.5	19	82	14	59	44	0	1	53	1.11
9396103--9396157	20	2.6	22	78	18	71	43	0	1	54	1.10
9396655--9396750	32	3.0	31	69	14	88	45	11	3	39	1.56
9397179--9397239	24	2.5	25	76	15	65	29	0	3	67	1.07
9400936--9400999	17	3.7	17	83	4	92	35	1	6	56	1.34
9400923--9401008	35	2.5	35	92	3	147	37	1	4	56	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9402678--9402950	29	9.4	28	71	14	153	38	25	3	33	1.72
9402678--9402950	87	3.1	85	73	12	205	38	25	3	33	1.72
9402942--9402994	28	1.9	27	84	3	70	32	20	5	41	1.76
9405075--9405155	17	4.8	17	85	0	108	43	0	4	51	1.23
9405075--9405159	6	14.8	6	70	18	56	43	0	4	51	1.22
9406774--9406917	28	4.9	29	69	19	93	35	2	29	32	1.72
9406770--9407008	58	4.2	58	75	13	239	34	3	28	33	1.74
9406817--9407018	109	1.8	109	85	3	280	34	2	27	34	1.72
9408751--9408813	25	2.5	25	89	0	90	19	11	47	22	1.80
9409117--9409195	6	13.3	6	69	7	54	51	3	0	44	1.19
9409130--9409229	18	5.6	17	77	8	101	56	6	0	38	1.24
9410383--9410636	29	8.6	30	71	10	161	33	22	2	41	1.68
9410380--9410636	59	4.4	59	82	3	268	34	22	2	40	1.68
9410620--9410700	29	2.8	29	81	5	110	30	33	8	27	1.87
9410623--9410716	29	3.2	30	76	10	97	35	28	9	26	1.88
9415854--9416382	49	10.7	49	75	6	313	33	17	30	18	1.94
9416091--9416308	99	2.2	99	80	1	231	33	15	32	18	1.93
9416137--9416387	50	5.0	50	76	2	164	35	17	28	18	1.94
9416606--9416725	41	2.9	41	93	2	197	28	20	22	28	1.99
9416727--9416869	39	3.7	39	74	0	126	23	28	20	26	1.99
9416723--9416928	77	2.7	78	79	0	225	24	28	18	28	1.98
9416958--9418233	417	3.1	417	89	1	1871	38	18	21	21	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9416955--9418233	209	6.1	209	89	1	1843	38	18	21	21	1.94
9416954--9418269	626	2.1	626	87	1	1913	38	18	21	21	1.94
9418668--9418701	17	1.9	17	94	5	59	41	0	0	58	0.98
9420433--9420605	87	2.0	86	85	5	233	35	27	1	35	1.67
9420427--9420606	29	6.2	28	77	10	148	35	26	1	36	1.67
9420433--9420640	87	2.4	85	80	8	208	35	27	2	34	1.70
9420642--9420698	29	2.0	28	86	3	78	33	19	5	42	1.74
9430249--9430296	22	2.2	22	81	7	53	31	0	8	60	1.26
9430471--9430507	19	2.1	19	85	10	51	70	2	0	27	1.01
9439309--9439341	18	1.9	17	88	11	50	36	3	6	54	1.41
9442919--9442961	21	2.0	22	86	4	61	62	4	0	32	1.15
9444150--9444198	23	2.1	23	82	14	57	24	0	4	71	1.03
9452771--9452808	17	2.2	17	86	9	51	36	0	2	60	1.11
9455049--9455091	22	1.9	23	85	4	61	30	9	6	53	1.59
9462424--9462480	29	2.0	29	85	0	78	49	1	0	49	1.11
9464672--9464758	44	2.0	44	100	0	174	27	9	17	45	1.78
9467935--9467982	23	2.1	23	100	0	96	33	31	0	35	1.58
9469216--9469264	23	2.1	23	85	7	64	44	10	2	42	1.49
9469356--9469416	29	2.0	32	87	9	92	54	0	1	44	1.10
9486833--9486910	29	2.6	30	80	11	106	32	10	16	41	1.82
9492455--9492492	3	12.3	3	88	5	58	63	0	36	0	0.95
9502262--9502307	25	1.9	23	86	8	65	32	4	6	56	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9503746--9503787	6	7.0	6	94	0	75	47	0	35	16	1.47
9516926--9517003	30	2.6	28	79	16	86	48	1	2	47	1.23
9521574--9521631	19	2.9	20	84	5	64	53	0	3	43	1.17
9521575--9521631	21	2.8	21	82	10	57	54	0	3	42	1.17
9552900--9552959	31	2.0	30	83	6	77	50	6	11	31	1.65
9560714--9560760	23	2.1	21	84	7	58	70	0	2	27	0.99
9572059--9572098	10	4.0	10	84	12	55	65	0	0	35	0.93
9575201--9575254	27	2.0	28	82	10	67	38	3	1	55	1.28
9579602--9579673	36	2.0	36	97	0	135	27	4	19	48	1.67
9580976--9581014	20	1.9	21	89	5	62	56	0	7	35	1.28
9589469--9589517	2	24.0	2	87	4	71	48	4	0	46	1.20
9591498--9591558	19	3.2	19	70	11	52	50	3	0	45	1.17
9591487--9591535	26	1.9	26	83	4	64	40	4	0	55	1.19
9593277--9593535	30	8.7	29	79	7	207	37	3	24	34	1.74
9596748--9596788	18	2.2	19	83	12	50	29	17	19	34	1.94
9597881--9597918	19	2.0	19	89	0	58	44	0	2	52	1.14
9602657--9602695	19	2.0	20	90	5	62	33	2	10	53	1.48
9609312--9609352	6	6.8	6	100	0	82	31	0	17	51	1.46
9611272--9611301	14	2.1	15	93	6	53	80	0	20	0	0.72
9615645--9615752	56	1.9	56	94	0	189	31	8	5	54	1.53
9617503--9617541	18	2.2	18	100	0	78	48	5	10	35	1.59
9620236--9620265	5	6.0	5	100	0	60	60	20	0	20	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9624138--9624376	105	2.3	105	82	10	271	41	17	12	28	1.87
9631768--9631888	23	5.2	23	72	11	95	42	19	24	13	1.87
9631768--9631832	23	2.8	23	90	4	96	44	20	20	15	1.86
9633349--9633388	19	2.0	20	85	4	55	22	15	5	57	1.57
9634090--9634171	33	2.6	31	83	11	103	25	15	10	47	1.78
9634093--9634171	31	2.5	33	85	8	101	24	16	11	48	1.79
9634030--9634226	90	2.1	92	80	9	215	24	18	12	45	1.83
9636942--9637132	23	8.5	23	75	14	148	42	21	24	12	1.86
9636996--9637070	39	1.9	39	91	0	123	44	21	22	12	1.85
9637035--9637132	48	2.1	46	88	7	144	39	23	24	12	1.89
9641470--9641502	3	11.0	3	100	0	66	0	33	0	66	0.92
9644594--9644632	11	3.5	11	86	13	53	56	0	0	43	0.99
9644882--9644960	34	2.2	34	82	6	86	54	1	5	39	1.30
9654934--9654958	3	8.3	3	100	0	50	32	0	0	68	0.90
9662356--9662386	3	10.3	3	100	0	62	32	0	0	67	0.91
9663832--9663859	2	14.0	2	100	0	56	50	0	0	50	1.00
9664447--9664576	62	2.1	62	97	0	242	39	11	6	43	1.66
9665526--9665563	16	2.4	17	86	8	53	50	0	0	50	1.00
9668927--9668951	7	3.6	7	100	0	50	28	0	0	72	0.86
9668947--9668982	18	2.1	17	94	5	63	50	0	0	50	1.00
9669726--9669769	21	2.0	22	86	4	63	45	0	2	52	1.13
9672916--9672953	18	2.2	18	86	9	53	50	2	0	47	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9673271--9673379	54	2.0	54	86	10	152	30	11	3	55	1.52
9673589--9673672	43	1.9	45	88	9	129	58	3	2	35	1.28
9682517--9682575	10	6.1	10	70	21	54	72	6	0	20	1.06
9682517--9682567	19	2.7	19	100	0	102	74	7	0	17	1.05
9682534--9682593	10	6.7	9	72	12	52	68	3	0	28	1.05
9682825--9682857	17	1.9	17	93	0	57	36	0	6	57	1.23
9686385--9686425	20	2.0	20	85	0	55	41	0	2	56	1.13
9691667--9691716	25	2.0	25	100	0	100	28	8	16	48	1.74
9700067--9700112	18	2.6	17	78	18	58	15	6	6	71	1.27
9700127--9700176	23	2.2	23	85	0	64	12	24	12	52	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135