Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  1  of  135  ( 16099 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--739
7
105.9
7
95
4
1286
43
42
0
13
1.47
1202--1376
29
6.1
29
67
12
103
36
53
4
6
1.45
1--1377
7
196.1
7
84
5
627
38
46
4
9
1.57
1429--1518
7
13.0
7
94
2
83
34
54
8
2
1.44
1429--1506
7
11.3
7
94
2
122
32
57
10
0
1.32
3006--3091
11
7.7
11
74
10
59
69
10
2
17
1.27
4383--4570
103
1.8
103
88
4
290
43
3
8
45
1.50
7557--7581
12
2.1
12
100
0
50
56
8
16
20
1.65
7720--7790
21
3.5
20
75
16
65
4
8
18
69
1.31
7749--7777
9
3.2
9
100
0
58
0
10
10
79
0.94
7728--7777
9
5.1
10
83
11
52
4
10
14
72
1.26
7784--7895
12
9.9
12
76
11
94
8
3
19
68
1.30
7813--7909
42
2.2
44
87
3
135
8
3
20
68
1.30
7840--7909
21
3.2
22
75
15
65
8
2
20
68
1.29
8711--8754
22
2.0
22
86
0
61
31
11
6
50
1.65
9769--9876
49
2.2
49
88
0
153
42
10
16
30
1.81
15395--15460
21
3.3
20
72
20
57
31
3
1
63
1.19
15524--15574
17
2.8
18
82
8
59
29
1
0
68
1.00
15524--15587
10
6.7
10
77
12
64
29
3
0
67
1.06
15528--15596
36
1.9
36
82
11
88
31
2
1
63
1.18
15808--15860
22
2.3
24
83
6
65
30
9
3
56
1.49
29671--29747
19
4.1
20
78
6
72
31
1
10
57
1.41
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
32312--32377
29
2.3
29
89
0
105
43
4
0
51
1.22
33382--33442
30
2.0
30
83
3
77
57
11
1
29
1.44
38865--38905
4
10.5
4
89
5
66
70
0
26
2
0.99
41896--41981
14
6.6
14
68
20
53
29
1
23
46
1.60
41900--41953
28
1.9
28
88
0
81
27
1
20
50
1.59
41900--41982
28
3.0
28
78
3
78
28
1
22
46
1.59
44245--44294
16
3.2
16
73
21
52
34
0
6
60
1.21
44990--45032
21
2.1
21
91
4
70
60
13
0
25
1.34
45395--45447
20
2.5
21
75
12
54
3
22
0
73
0.99
45402--45439
16
2.4
16
86
8
51
5
15
0
78
0.91
53969--54012
18
2.3
20
77
22
58
38
4
6
50
1.50
58993--59039
22
2.0
24
84
8
62
34
2
2
61
1.20
62827--62861
18
1.9
18
88
0
52
28
17
14
40
1.88
63265--63309
19
2.4
19
81
7
56
37
0
4
57
1.19
64080--64126
21
2.2
21
88
3
67
17
6
2
74
1.12
83525--83567
3
14.7
3
90
4
70
65
0
0
34
0.93
85631--85682
21
2.5
22
78
9
63
57
0
3
38
1.17
92436--92530
46
2.1
46
97
0
181
27
8
11
52
1.66
96222--96268
3
15.0
3
91
8
76
31
2
2
63
1.18
96947--96971
12
2.1
12
100
0
50
40
20
0
40
1.52
98906--98945
19
2.1
19
100
0
80
15
25
22
37
1.93
116810--116857
24
2.0
24
91
0
78
27
8
27
37
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
123009--123048
21
1.9
21
89
0
62
65
10
12
12
1.49
130816--130840
12
2.1
12
100
0
50
0
92
8
0
0.40
146607--146631
1
25.0
1
100
0
50
0
0
100
0
0.00
148581--148738
52
3.1
51
65
18
141
40
13
11
34
1.81
148539--148739
99
2.0
99
99
0
393
38
15
11
34
1.83
148570--148720
47
3.1
47
65
19
128
43
12
11
32
1.79
161937--161991
27
2.0
27
96
0
101
58
0
5
36
1.21
173447--173509
31
2.0
31
81
9
74
52
4
0
42
1.22
174601--174634
16
2.1
16
88
0
50
61
0
8
29
1.26
177509--177533
12
2.1
12
100
0
50
32
28
0
40
1.57
191016--191043
3
9.3
3
100
0
56
67
0
0
32
0.91
221023--221062
20
2.1
19
85
4
53
60
7
2
30
1.38
221387--221432
2
23.0
2
100
0
92
50
0
0
50
1.00
223983--224010
4
7.0
4
100
0
56
0
50
0
50
1.00
234387--234412
6
4.3
6
100
0
52
15
34
0
50
1.45
260337--260371
12
2.9
12
86
0
52
25
5
34
34
1.80
260329--260368
21
1.9
21
89
0
62
20
5
40
35
1.74
268386--268503
61
1.9
61
81
6
141
44
8
9
37
1.67
269190--269313
59
2.1
60
84
3
162
42
16
16
25
1.87
269190--269342
59
2.6
59
80
8
143
43
17
16
22
1.87
278156--278215
10
5.4
10
75
21
57
25
1
3
70
1.12
278156--278215
23
2.6
22
80
19
70
25
1
3
70
1.12
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
284562--284599
15
2.6
14
88
8
58
60
7
26
5
1.46
285618--285673
24
2.3
25
84
3
69
46
0
0
53
1.00
304932--304972
9
4.4
9
84
6
55
73
0
2
24
0.96
304932--304972
19
2.2
18
86
4
55
73
0
2
24
0.96
307837--308004
57
3.0
56
83
7
193
26
17
27
28
1.98
310807--310831
13
1.9
13
100
0
50
16
8
4
72
1.24
310949--311051
22
5.0
20
70
20
63
59
1
2
35
1.24
310959--311051
40
2.3
41
96
1
170
60
0
3
36
1.13
310975--311012
18
2.2
17
90
4
58
60
0
2
36
1.11
311518--311582
27
2.4
27
92
2
114
50
3
15
30
1.59
318878--318914
19
2.1
19
85
10
51
37
2
2
56
1.28
323199--323481
142
2.0
142
79
1
307
37
9
15
37
1.80
342155--342187
16
2.0
17
88
5
50
60
0
0
39
0.97
359937--359974
17
2.2
17
90
0
58
52
5
7
34
1.53
361213--361250
18
2.2
18
85
4
51
71
13
2
13
1.26
361213--361263
17
2.9
17
77
11
50
70
15
1
11
1.25
366946--366998
27
2.0
26
92
3
88
69
3
13
13
1.31
369305--369345
20
2.0
20
100
0
82
34
21
4
39
1.75
375723--375780
28
2.2
26
84
6
71
32
6
1
58
1.35
375723--375781
27
2.2
26
82
8
66
33
6
1
57
1.35
376491--376541
20
2.4
21
83
9
59
49
0
0
50
1.00
376496--376548
23
2.6
19
76
21
54
45
0
0
54
0.99
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
376877--376950
31
2.4
29
79
18
80
51
6
0
41
1.28
378022--378051
14
2.1
14
93
0
51
56
3
0
40
1.16
379148--379219
2
36.0
2
100
0
144
50
0
0
50
1.00
390375--390422
20
2.5
19
86
6
62
4
25
6
64
1.35
392476--392533
23
2.4
25
82
11
75
48
1
0
50
1.11
397893--397933
21
2.0
21
85
0
55
31
7
7
53
1.56
398339--398367
6
4.8
6
100
0
58
34
17
31
17
1.93
398955--398998
21
2.2
19
88
8
61
72
9
11
6
1.27
399478--399564
21
4.0
21
69
16
59
56
2
1
40
1.19
401545--401580
17
2.1
17
89
0
54
44
25
13
16
1.85
403490--403938
228
2.0
228
98
0
862
36
21
14
27
1.92
406232--406285
23
2.3
23
90
6
83
38
27
18
14
1.90
414387--414412
10
2.6
10
100
0
52
26
0
0
73
0.84
418084--418139
29
1.9
29
85
7
78
48
1
5
44
1.36
420478--420598
58
2.1
58
92
3
199
32
0
19
47
1.50
420732--420758
9
3.0
9
100
0
54
22
11
11
55
1.66
422676--422725
25
2.0
25
88
0
73
48
16
10
26
1.77
425949--425999
18
2.8
18
77
14
50
39
0
3
56
1.18
433890--433917
6
4.7
6
100
0
56
67
0
0
32
0.91
451939--451986
3
16.0
3
95
0
60
41
0
33
25
1.55
453781--453866
43
2.0
43
93
0
145
45
13
13
26
1.82
461240--461270
15
2.0
16
93
6
55
35
0
0
64
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
463115--463139
3
8.3
3
100
0
50
68
0
0
32
0.90
465362--465391
15
1.9
15
93
6
51
66
3
0
30
1.07
465356--465395
16
2.5
17
84
12
57
67
2
0
30
1.04
467598--467657
30
2.0
30
96
0
111
41
3
28
26
1.71
468067--468102
2
18.0
2
100
0
72
50
0
0
50
1.00
468168--468201
13
2.4
14
90
9
52
73
0
26
0
0.83
468445--468544
38
2.5
39
73
11
96
23
18
28
31
1.97
469054--469082
2
15.0
2
92
7
51
48
0
0
51
1.00
490781--490847
30
2.2
29
81
5
71
46
10
4
38
1.59
496806--496842
19
2.0
19
94
5
67
37
2
0
59
1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135