genome.fa.s10.2.7.7.80.10.50.1000.61.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  61  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20487423--20487515	1	93.0	1	76	0	87	0	3	8	88	0.62
20487425--20487515	20	4.7	19	82	10	105	0	3	8	87	0.63
20487422--20487514	46	2.0	47	89	6	145	0	3	9	87	0.66
20498851--20499299	30	15.2	29	68	18	203	35	5	28	31	1.79
20499222--20499344	30	4.2	29	72	13	90	35	4	26	34	1.75
20498709--20499315	59	10.3	59	87	1	846	34	5	28	31	1.79
20499438--20499755	161	2.0	163	93	3	554	46	13	15	24	1.82
20500532--20500566	10	3.5	10	96	0	61	45	0	0	54	0.99
20501018--20501056	20	2.0	20	89	0	60	17	17	48	15	1.81
20501099--20501151	14	3.9	14	80	9	65	16	18	30	33	1.94
20501174--20501285	6	18.8	6	73	15	90	48	1	0	49	1.18
20501201--20501285	17	5.2	16	75	16	77	52	2	1	43	1.21
20501199--20501285	25	3.8	22	82	11	104	52	2	1	43	1.21
20501198--20501266	31	2.3	30	87	9	97	50	2	1	44	1.25
20507632--20507881	127	2.0	126	81	2	295	39	14	22	23	1.91
20508593--20508942	50	7.0	50	73	4	249	35	18	19	26	1.95
20508801--20508974	50	3.5	50	76	3	197	32	21	19	27	1.97
20508593--20508993	100	4.0	100	85	0	480	35	18	19	25	1.95
20516945--20517000	26	2.2	26	90	6	87	28	21	21	28	1.99
20518195--20518334	28	4.9	29	82	7	153	37	26	2	34	1.69
20518195--20518395	29	7.0	28	78	7	152	36	25	2	35	1.70
20518197--20518334	57	2.4	58	80	4	174	37	26	2	34	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20518199--20518403	28	7.1	28	77	8	90	37	24	2	35	1.69
20518665--20518858	97	2.0	97	89	2	300	27	17	16	38	1.91
20526973--20527326	176	2.0	176	100	0	708	34	18	20	25	1.96
20530732--20531141	39	10.5	39	73	12	290	26	32	16	24	1.96
20530732--20531226	78	6.4	78	82	5	463	27	32	16	23	1.96
20530810--20531180	117	3.2	116	70	16	262	27	32	16	23	1.96
20530849--20531212	39	9.4	39	72	8	251	27	32	15	23	1.95
20530771--20531225	156	2.9	156	82	6	539	27	32	16	23	1.96
20531651--20531718	6	11.8	6	71	14	54	41	2	2	52	1.31
20531652--20531731	17	4.7	17	84	3	108	40	2	3	53	1.32
20533594--20533650	29	1.9	30	89	3	89	29	17	8	43	1.79
20533609--20533696	27	3.1	29	79	11	74	32	20	5	40	1.76
20533637--20533696	27	2.1	29	84	6	79	35	21	5	38	1.75
20534014--20534207	97	2.0	97	88	4	293	27	19	16	37	1.93
20537387--20537470	38	2.2	37	85	10	116	33	22	16	27	1.96
20540705--20540848	52	2.8	52	82	6	184	26	12	26	34	1.92
20541797--20541826	15	2.1	15	93	6	53	56	6	16	20	1.62
20543208--20543288	38	2.1	38	82	8	94	32	23	17	27	1.97
20545194--20545229	18	2.0	19	89	10	58	38	22	22	16	1.93
20545192--20545239	18	2.5	18	80	19	53	41	16	29	12	1.85
20545632--20545694	30	2.1	30	90	0	99	17	3	19	60	1.49
20546778--20546858	38	2.1	38	86	4	110	32	23	18	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20548735--20548781	13	3.7	13	80	5	60	36	21	4	38	1.73
20548913--20548956	23	1.9	23	100	0	88	50	29	4	15	1.64
20550962--20551006	13	3.5	13	81	6	56	35	20	4	40	1.72
20553346--20553380	18	1.9	18	88	11	54	54	0	2	42	1.15
20572717--20572768	21	2.5	21	90	6	79	32	21	21	25	1.98
20578546--20578986	220	2.0	220	96	0	819	28	19	21	29	1.98
20581178--20581222	23	2.0	22	87	8	65	28	0	4	66	1.11
20590764--20590805	17	2.6	16	85	14	52	30	2	2	64	1.19
20592180--20592219	18	2.2	19	86	4	55	27	7	22	42	1.80
20593595--20593809	103	2.2	98	86	10	287	36	6	13	44	1.69
20594811--20594848	18	2.1	19	85	5	51	39	0	2	57	1.12
20602958--20603029	30	2.4	30	77	13	76	37	0	12	50	1.41
20604364--20604397	16	2.1	16	88	0	50	29	5	5	58	1.45
20605834--20606389	289	1.9	289	93	0	959	27	18	17	35	1.94
20610590--20610625	18	2.0	18	100	0	72	50	22	5	22	1.70
20610629--20610661	4	8.8	4	87	12	52	48	0	0	51	1.00
20616891--20616933	16	2.7	16	100	0	86	48	0	6	44	1.29
20617511--20617540	14	2.1	14	100	0	60	53	20	6	20	1.67
20619299--20619333	18	1.9	18	88	11	54	22	17	25	34	1.96
20636463--20636495	14	2.3	15	89	5	50	45	0	3	51	1.16
20637458--20637545	32	2.8	32	91	0	149	42	10	6	40	1.65
20644347--20644417	26	2.7	26	95	0	124	30	18	26	23	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20650908--20651114	74	2.8	74	90	2	310	15	20	33	29	1.94
20650914--20651114	37	5.4	37	89	2	271	14	20	34	30	1.93
20657229--20657285	24	2.4	23	79	5	60	73	5	12	8	1.23
20657241--20657291	23	2.2	23	86	6	68	68	3	15	11	1.34
20659548--20659657	11	10.0	11	73	14	75	44	2	0	52	1.15
20659541--20659640	6	17.0	6	70	21	70	43	2	1	54	1.18
20659534--20659631	31	3.2	30	84	5	117	38	2	1	58	1.17
20659541--20659640	17	6.4	16	77	19	86	43	2	1	54	1.18
20659541--20659642	23	4.3	23	67	19	59	43	1	0	53	1.18
20659614--20659656	16	2.6	16	85	3	50	53	2	0	44	1.13
20660426--20660459	3	11.0	3	87	6	50	64	0	0	35	0.94
20660427--20660475	16	3.0	16	87	3	71	61	0	0	38	0.96
20660668--20660702	18	1.9	18	94	0	61	45	11	11	31	1.76
20661429--20661740	29	10.7	27	68	22	145	32	29	2	35	1.72
20661428--20661740	59	5.3	59	87	2	443	32	29	2	35	1.72
20661429--20661697	29	9.2	28	67	18	147	34	27	1	36	1.68
20663889--20663923	15	2.3	15	95	0	61	31	22	0	45	1.53
20670139--20670193	26	2.1	26	86	0	74	47	14	5	32	1.67
20672194--20672420	88	2.6	89	82	5	264	40	16	8	33	1.80
20672539--20672615	20	3.8	20	83	10	88	67	0	1	31	0.99
20672539--20672615	21	3.8	19	80	19	86	67	0	1	31	0.99
20672589--20672631	10	4.4	10	79	5	52	74	0	2	23	0.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20672589--20672652	10	6.4	11	73	12	50	70	0	1	28	0.97
20672829--20672913	9	9.2	9	69	19	59	35	1	2	61	1.17
20673050--20673219	93	1.8	91	81	5	207	35	8	18	38	1.80
20682705--20682738	16	2.1	17	94	5	61	29	5	32	32	1.81
20699949--20700133	41	4.5	41	80	2	201	21	25	14	38	1.91
20701919--20701948	16	1.9	16	93	6	53	33	3	3	60	1.30
20704530--20704685	80	2.0	80	93	0	267	25	20	24	29	1.99
20706654--20706712	27	2.3	24	85	11	73	22	11	0	66	1.24
20709105--20709149	22	2.0	22	86	0	63	55	13	13	17	1.69
20713007--20713222	30	7.2	30	80	5	168	38	19	4	37	1.73
20713013--20713223	60	3.5	60	80	7	214	38	19	4	37	1.71
20724769--20724894	49	2.5	50	82	3	148	40	23	16	19	1.91
20724973--20725257	40	7.2	39	69	7	182	30	23	19	26	1.98
20724989--20725182	39	4.9	38	68	7	136	31	21	20	26	1.98
20724978--20725256	79	3.5	79	85	1	382	30	24	19	25	1.98
20726906--20727120	30	7.2	29	78	9	186	37	20	5	36	1.75
20726906--20727119	60	3.6	60	79	12	251	37	20	5	36	1.75
20732499--20732787	39	7.3	39	70	5	204	31	22	19	25	1.98
20732491--20732844	79	4.5	78	82	2	404	31	23	18	26	1.98
20732479--20732844	158	2.3	157	84	4	450	30	23	18	27	1.97
20735928--20736037	50	2.2	50	77	9	118	36	16	21	25	1.94
20736093--20736378	39	7.3	39	77	7	281	31	24	20	23	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20736073--20736436	39	9.2	38	71	11	243	30	24	19	25	1.98
20736074--20736436	79	4.6	78	85	2	467	30	24	19	25	1.98
20736073--20736436	158	2.3	158	87	1	516	30	24	19	25	1.98
20738109--20738269	29	5.4	30	82	5	168	37	24	6	31	1.80
20738126--20738235	30	3.8	29	84	3	123	40	21	6	31	1.79
20738113--20738293	59	3.1	59	78	10	174	39	23	5	31	1.77
20738109--20738289	29	6.1	30	78	8	149	38	22	6	33	1.78
20748152--20748329	50	3.6	50	75	6	155	37	19	21	21	1.95
20748354--20748721	39	9.3	40	72	10	258	29	23	19	26	1.98
20748355--20748721	79	4.6	79	85	2	486	29	23	19	26	1.98

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135