genome.fa.s10.2.7.7.80.10.50.1000.62.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  62  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20748354--20748721	158	2.3	158	89	0	574	29	23	19	26	1.98
20750366--20750552	30	6.3	30	73	10	100	39	21	5	33	1.76
20750392--20750469	29	2.6	30	74	9	79	38	19	5	37	1.74
20750366--20750593	59	3.8	61	76	8	163	38	21	6	34	1.78
20750349--20750591	89	2.7	90	71	8	212	38	20	6	34	1.78
20750482--20750583	30	3.4	29	85	4	132	39	23	2	34	1.70
20762345--20762789	79	5.6	79	86	1	586	31	23	18	27	1.97
20762344--20762789	237	1.9	237	88	1	680	31	23	18	27	1.97
20764482--20764594	30	3.8	30	87	4	165	36	24	4	34	1.76
20764438--20764594	60	2.6	61	82	7	162	35	24	6	34	1.81
20770942--20771235	52	5.7	52	92	0	462	28	12	23	34	1.92
20771241--20771282	17	2.5	17	96	0	75	42	14	16	26	1.86
20774155--20774186	15	2.1	15	94	0	55	37	3	0	59	1.13
20776693--20776740	10	4.8	10	82	5	53	66	10	2	20	1.32
20776773--20776815	3	14.3	3	100	0	86	67	0	0	32	0.91
20776871--20776929	30	1.9	32	82	6	77	62	1	8	27	1.33
20776935--20777038	15	7.4	14	71	14	72	71	2	4	21	1.18
20777135--20777195	24	2.5	25	78	10	63	67	3	4	24	1.26
20778107--20778147	21	2.0	21	85	0	55	12	9	2	75	1.13
20778404--20778448	22	2.0	22	83	8	56	20	0	11	68	1.19
20778737--20779248	101	5.1	98	75	8	340	26	17	18	37	1.93
20779176--20779466	102	2.9	102	77	4	302	25	17	20	36	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20780404--20780480	6	13.2	6	73	20	56	1	24	0	74	0.90
20780408--20780480	21	3.5	22	78	14	73	1	23	0	75	0.88
20781729--20781761	13	2.4	14	90	5	50	0	9	3	87	0.63
20785379--20785408	13	2.3	13	100	0	60	63	20	0	16	1.31
20791930--20791959	13	2.2	14	94	5	53	3	30	0	66	1.07
20808398--20808445	23	2.1	23	84	7	62	22	14	2	60	1.45
20812800--20812874	29	2.5	30	81	14	77	4	28	1	66	1.17
20812820--20812874	29	1.9	28	89	10	85	3	29	1	65	1.20
20812817--20812896	20	3.8	20	71	15	63	5	23	1	70	1.15
20820813--20820907	40	2.4	40	85	5	122	31	30	11	26	1.91
20825898--20826031	39	3.4	39	78	6	162	29	27	16	26	1.97
20826032--20826072	21	2.0	21	90	9	68	48	9	19	21	1.77
20826604--20826636	4	8.5	4	93	6	59	24	0	0	75	0.80
20826648--20826755	55	2.0	55	88	3	164	46	0	4	49	1.22
20826612--20826789	63	2.9	61	80	8	218	46	0	4	49	1.22
20839779--20839818	12	3.2	12	86	10	53	87	5	5	2	0.73
20839779--20839819	15	3.0	14	86	10	50	85	4	4	4	0.83
20840049--20840098	22	2.3	21	89	3	73	6	6	24	64	1.39
20840040--20840103	21	3.0	22	83	4	76	6	4	21	67	1.32
20840062--20840109	22	2.2	22	84	0	60	10	6	16	66	1.41
20840129--20840181	19	2.8	18	75	8	61	3	3	22	69	1.20
20844136--20844304	23	7.4	21	80	13	133	13	23	20	42	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20844136--20844285	46	3.2	45	83	5	158	12	24	21	42	1.86
20844160--20844307	69	2.1	67	86	7	199	13	22	19	44	1.85
20845834--20845877	21	2.1	21	91	0	70	27	20	2	50	1.60
20850869--20850929	27	2.3	27	80	8	72	29	3	4	62	1.32
20852201--20852249	20	2.7	18	77	22	57	51	2	2	44	1.24
20852237--20852305	35	2.0	35	85	5	95	50	4	1	43	1.30
20859681--20859759	17	4.3	18	74	14	74	53	3	1	41	1.27
20859681--20859767	25	3.2	26	74	20	81	52	4	1	41	1.29
20859686--20859776	20	4.8	19	71	14	64	52	4	1	41	1.28
20859714--20859776	19	3.4	18	72	16	58	55	3	0	41	1.16
20872423--20872462	21	2.0	21	90	5	64	45	15	15	25	1.84
20874847--20874877	5	6.4	5	92	7	55	0	0	16	83	0.64
20880391--20880581	28	6.8	28	77	8	138	26	8	20	43	1.81
20880446--20880584	56	2.5	57	83	2	156	28	10	19	41	1.84
20880661--20880779	28	4.3	27	75	7	80	16	17	23	42	1.89
20880664--20880789	27	4.6	28	74	6	96	16	18	23	42	1.89
20880748--20880835	29	3.1	28	69	9	72	23	17	19	39	1.92
20882429--20882458	14	2.2	14	94	5	53	30	23	10	36	1.87
20888438--20888494	28	2.0	28	100	0	114	36	21	17	24	1.94
20901438--20901466	3	9.7	3	100	0	58	34	0	0	65	0.93
20902139--20902191	19	2.9	18	80	5	63	52	3	0	43	1.19
20910941--20911020	31	2.6	30	82	9	99	31	16	7	45	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20910954--20911020	30	2.2	31	89	2	100	32	16	5	44	1.72
20910899--20911074	88	2.0	90	82	4	214	28	17	9	44	1.79
20911217--20911406	59	3.2	59	79	4	197	49	11	12	26	1.74
20913480--20913505	8	3.2	8	100	0	52	65	23	11	0	1.25
20916382--20916525	61	2.4	60	83	9	168	26	15	10	47	1.77
20916755--20916834	31	2.6	31	82	4	90	41	10	20	28	1.84
20919271--20919304	14	2.4	14	95	0	59	11	5	11	70	1.32
20923161--20923203	18	2.4	18	88	7	61	55	0	0	44	0.99
20926352--20926482	64	2.0	64	92	0	217	30	8	18	42	1.80
20927694--20927770	31	2.5	30	72	4	73	40	1	11	46	1.48
20928101--20928208	6	17.3	6	75	17	96	46	2	1	49	1.27
20928101--20928203	23	4.7	22	73	20	90	44	2	1	50	1.28
20928124--20928176	14	3.8	14	89	0	88	47	0	3	49	1.19
20928953--20928996	19	2.2	19	84	12	52	50	4	0	45	1.22
20930267--20930397	29	4.5	29	73	14	90	32	26	4	35	1.77
20942533--20943300	76	10.1	76	90	1	1137	34	15	19	30	1.93
20943582--20943669	6	14.5	6	75	15	74	46	3	1	48	1.26
20943574--20943646	17	4.5	17	80	11	82	41	4	2	52	1.35
20943588--20943647	31	1.9	31	93	0	102	41	5	1	51	1.33
20943582--20943669	11	7.8	11	72	11	54	46	3	1	48	1.26
20944408--20944443	16	2.2	16	90	9	56	52	2	0	44	1.15
20944403--20944452	22	2.3	22	86	3	66	54	4	0	42	1.19
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20945741--20946120	59	6.5	58	88	3	548	32	30	2	33	1.73
20945745--20946120	178	2.1	176	90	2	592	32	30	2	33	1.73
20954743--20954839	49	2.0	49	87	0	140	34	16	12	37	1.86
20955080--20955117	14	2.7	14	84	11	51	10	18	2	68	1.30
20955933--20955964	16	1.9	17	93	6	57	31	12	28	28	1.93
20957458--20957496	17	2.2	18	90	4	62	15	12	12	58	1.62
20958081--20958127	10	4.9	10	78	17	55	80	0	19	0	0.70
20958082--20958127	19	2.4	18	83	16	58	80	0	19	0	0.71
20958082--20958127	15	3.2	13	82	17	56	80	0	19	0	0.71
20965293--20965351	30	1.9	31	86	10	86	35	6	16	40	1.76
20975505--20975656	40	3.8	40	77	3	153	32	21	22	24	1.98
20976384--20976442	30	1.9	31	86	10	86	35	6	16	40	1.76
20978331--20978603	29	9.2	28	80	8	231	37	26	1	35	1.64
20986806--20987518	50	14.4	50	75	5	543	33	17	32	16	1.93
20986801--20987518	99	7.3	99	77	5	558	33	17	32	16	1.93
20986841--20987518	49	13.7	49	74	4	484	33	17	32	16	1.92
20988457--20988503	23	2.0	24	83	4	60	40	8	2	48	1.45
20989695--20989811	30	3.9	30	81	9	98	36	23	2	36	1.69
20989737--20989933	58	3.4	58	77	1	187	36	26	2	34	1.70
20989696--20989937	29	8.2	30	72	10	162	37	25	2	34	1.71
20989770--20989956	29	6.4	29	76	9	98	36	25	2	35	1.68
20992921--20992981	24	2.5	24	86	0	86	52	11	11	24	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20994912--20994974	24	2.6	24	87	0	90	50	9	14	25	1.72
20997817--20997873	25	2.3	26	81	9	73	35	5	10	49	1.60
20998309--20998373	30	2.2	30	91	0	103	61	15	1	21	1.42
20998581--20998614	14	2.3	15	90	5	52	20	14	8	55	1.65
20998865--20998889	10	2.5	10	100	0	50	48	0	12	40	1.40
21000542--21000699	82	2.0	78	91	5	253	17	11	14	56	1.67
21002226--21002291	19	3.6	18	87	6	87	16	0	36	46	1.47
21002370--21002421	14	3.7	14	78	14	54	25	7	34	32	1.84
21003910--21003939	14	2.1	14	93	0	51	70	3	6	20	1.25
21003929--21003974	6	8.2	6	76	13	53	65	4	0	30	1.12

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135