genome.fa.s10.2.7.7.80.10.50.1000.126.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  126  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41341518--41341551	11	3.1	11	86	0	50	55	0	2	41	1.15
41341518--41341578	22	2.8	21	80	5	50	57	1	3	37	1.25
41341524--41341568	17	2.8	16	83	6	63	55	0	2	42	1.12
41347922--41347955	2	17.0	2	100	0	68	0	0	50	50	1.00
41364433--41364496	28	2.3	29	74	17	71	64	6	1	28	1.27
41367890--41367969	29	2.8	29	92	0	124	26	16	25	32	1.96
41367692--41368175	235	2.1	233	89	1	736	30	19	22	26	1.98
41367925--41368328	206	2.0	206	89	2	623	30	19	24	25	1.98
41374058--41374130	11	6.1	11	72	17	56	41	1	1	56	1.16
41374901--41374934	3	11.0	3	87	6	50	61	0	0	38	0.96
41375461--41375529	27	2.5	27	97	2	129	21	24	43	10	1.83
41376138--41376284	30	4.9	30	87	0	204	36	21	5	36	1.77
41376124--41376312	90	2.1	89	84	8	242	35	23	5	34	1.78
41376285--41376480	59	3.3	58	71	7	164	29	29	5	35	1.80
41377912--41377963	24	2.2	24	92	0	86	51	7	3	36	1.49
41380465--41380503	19	2.1	19	85	0	51	38	0	5	56	1.22
41380658--41380691	9	3.8	9	88	0	50	44	8	11	35	1.72
41382316--41382376	30	2.1	28	85	11	79	40	9	1	47	1.46
41386080--41386394	30	10.7	29	78	8	253	34	3	26	35	1.72
41386080--41386374	58	5.0	57	82	7	342	34	2	26	35	1.71
41387404--41387448	12	3.5	12	77	16	54	40	4	2	53	1.33
41388124--41388189	17	3.9	17	83	0	78	56	7	1	34	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41388155--41388201	17	2.8	16	90	9	76	57	4	0	38	1.18
41388531--41389026	205	2.4	204	89	2	724	21	21	19	36	1.95
41388835--41389195	169	2.1	169	92	1	598	21	20	19	37	1.94
41388640--41389375	375	2.0	374	92	0	1213	22	21	19	36	1.95
41389461--41389604	39	3.7	38	74	15	134	27	20	28	23	1.99
41389406--41389643	78	3.1	78	87	3	336	27	19	29	23	1.98
41389500--41389762	117	2.3	114	88	2	332	28	22	26	22	1.99
41389500--41389762	39	6.7	39	74	8	221	28	22	26	22	1.99
41391882--41391951	11	6.2	11	73	3	50	35	0	7	57	1.26
41391881--41391960	12	6.9	12	72	5	67	37	0	6	56	1.25
41391909--41391960	6	8.8	6	78	4	52	38	0	3	57	1.17
41391881--41391973	35	2.7	34	82	9	109	37	1	7	53	1.36
41392030--41392086	25	2.2	26	78	12	64	43	31	14	10	1.79
41394009--41394247	29	8.1	30	75	13	178	38	24	2	34	1.67
41394010--41394221	58	3.6	59	80	9	213	38	25	1	34	1.67
41394345--41394405	29	2.1	29	84	6	79	37	24	8	29	1.84
41400015--41400086	7	10.3	7	75	19	53	83	6	9	0	0.81
41400010--41400086	13	6.2	12	78	13	59	83	6	10	0	0.82
41400033--41400067	6	5.7	6	86	6	52	85	14	0	0	0.59
41400010--41400086	6	12.5	6	79	14	50	83	6	10	0	0.82
41401084--41401391	51	6.1	50	72	7	223	39	20	27	12	1.89
41401133--41401391	101	2.6	101	88	2	367	40	20	26	12	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41401611--41401692	39	2.1	38	84	6	103	23	25	28	23	2.00
41401628--41401773	39	3.7	39	76	10	145	21	28	23	26	1.99
41401630--41401775	78	1.9	78	88	2	222	21	28	23	26	1.99
41401824--41402661	200	4.2	200	90	1	1185	34	19	23	22	1.97
41403000--41403057	11	5.2	11	75	4	53	39	0	6	53	1.28
41403027--41403083	29	2.0	29	85	0	78	38	0	7	54	1.28
41405097--41405272	30	6.0	29	78	10	162	35	25	3	35	1.73
41405097--41405255	59	2.7	60	85	6	200	35	26	3	34	1.72
41405111--41405306	59	3.3	58	81	9	168	36	23	3	36	1.71
41405406--41405466	29	2.1	29	84	6	79	37	24	9	27	1.87
41407802--41407999	59	3.4	58	83	6	220	34	4	27	33	1.76
41407805--41408014	30	7.1	30	85	3	257	34	3	28	33	1.74
41407805--41408008	89	2.3	89	88	2	295	35	3	27	33	1.74
41409772--41409854	17	4.9	17	81	0	94	57	7	1	33	1.34
41409772--41409866	34	2.8	34	81	0	118	58	7	1	32	1.32
41409777--41409866	17	5.3	17	80	5	92	60	6	1	32	1.30
41410434--41410501	29	2.3	29	84	0	91	45	13	14	26	1.82
41410445--41410488	23	1.9	23	90	0	70	43	13	18	25	1.86
41410460--41410540	40	2.0	40	90	0	126	46	13	11	28	1.77
41411561--41411610	3	16.7	3	100	0	100	66	0	0	34	0.92
41411936--41411984	18	2.8	17	81	6	62	75	6	8	10	1.18
41415078--41415113	18	1.9	18	88	5	54	77	5	8	8	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41416539--41416597	18	3.3	18	81	9	59	28	23	35	11	1.91
41417686--41418181	49	10.1	49	71	9	332	19	22	18	40	1.92
41417685--41418189	98	5.2	98	87	1	672	19	22	18	40	1.91
41417685--41418386	196	3.6	196	82	5	726	19	23	17	39	1.92
41418076--41418463	197	2.0	197	93	1	670	21	25	15	37	1.93
41423889--41423940	17	3.1	17	85	0	77	36	0	5	57	1.23
41425518--41425851	161	2.1	162	92	1	555	26	16	12	44	1.83
41425924--41426125	30	6.8	30	64	16	96	32	29	4	33	1.78
41425928--41426096	29	5.7	30	66	12	91	33	28	4	33	1.77
41425925--41426151	59	3.8	59	85	6	305	32	29	4	33	1.77
41426015--41426168	30	5.1	28	64	23	64	31	30	5	32	1.80
41426132--41426206	38	2.0	38	94	0	132	30	28	5	36	1.79
41435007--41435089	6	13.8	6	77	14	73	48	1	1	49	1.16
41434997--41435066	11	6.5	11	73	17	58	41	1	2	54	1.24
41436824--41437059	30	7.9	30	85	4	298	38	23	2	35	1.69
41448903--41449773	68	12.8	68	92	0	1418	34	16	20	28	1.94
41450088--41450142	27	2.0	27	89	0	83	40	0	5	54	1.23
41450106--41450205	6	16.8	6	77	13	91	47	1	1	51	1.14
41450106--41450179	17	4.6	17	85	11	93	40	1	1	56	1.16
41450096--41450173	11	7.9	10	71	25	51	39	1	2	56	1.21
41451947--41452298	30	11.7	30	82	6	412	37	25	3	34	1.73
41451947--41452301	60	5.9	60	86	4	461	36	25	3	34	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41452275--41452492	59	3.7	57	72	6	188	31	28	3	36	1.73
41455885--41455996	32	3.5	32	67	20	83	50	5	2	41	1.39
41456988--41457013	13	2.0	13	100	0	52	38	38	15	7	1.76
41458699--41458760	17	3.5	17	73	4	52	53	1	0	45	1.10
41458139--41459356	625	1.9	625	100	0	2436	39	8	10	40	1.71
41459481--41459522	13	2.9	14	80	13	50	54	0	0	45	0.99
41459485--41459521	16	2.3	16	86	13	58	59	0	0	40	0.97
41459554--41459610	15	3.5	15	73	17	60	50	1	0	47	1.11
41461301--41461345	23	1.9	24	86	4	65	20	2	4	73	1.11
41468380--41468419	13	3.2	12	86	10	53	50	0	7	42	1.30
41469040--41469080	13	3.5	12	80	16	50	70	0	0	29	0.87
41469040--41469088	22	2.3	22	89	10	75	73	0	0	26	0.83
41475531--41475585	23	2.4	22	85	8	74	45	3	0	50	1.19
41475514--41475586	6	12.7	6	74	18	66	43	4	0	52	1.20
41475511--41475587	12	6.8	11	79	10	84	45	3	0	50	1.20
41475762--41475817	15	3.9	14	80	20	62	21	55	10	12	1.67
41477496--41477712	29	7.5	30	69	10	155	32	26	4	36	1.76
41477496--41477719	116	1.9	116	89	3	344	31	27	4	35	1.78
41477496--41477719	59	3.9	57	85	2	288	31	27	4	35	1.78
41489675--41490423	38	21.4	37	69	16	447	33	17	20	28	1.95
41489768--41490111	69	4.8	68	83	9	395	32	18	20	28	1.97
41489666--41490216	106	5.2	106	82	9	671	32	18	20	27	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41490136--41490385	31	7.4	31	69	19	162	35	16	19	28	1.93
41489904--41490286	174	2.1	179	86	7	530	32	18	20	28	1.96
41490091--41490430	69	5.0	69	93	2	535	34	16	19	29	1.94
41490781--41490835	23	2.4	22	82	8	65	43	3	1	50	1.30
41490764--41490836	6	12.7	6	72	18	57	42	4	1	52	1.29
41490784--41490830	17	2.8	17	84	9	60	44	4	2	48	1.34
41490764--41490836	11	6.3	12	74	16	57	42	4	1	52	1.29
41490761--41490837	12	6.8	11	76	10	75	44	3	1	50	1.28
41491014--41491069	15	3.9	14	80	20	62	21	55	10	12	1.67
41492471--41492780	162	1.9	162	91	2	507	25	16	11	47	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135