genome.fa.s10.2.7.7.80.10.50.1000.43.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  43  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15832733--15832787	25	2.2	25	90	3	85	49	7	21	21	1.74
15834215--15834281	29	2.3	29	89	0	98	52	8	4	34	1.53
15835253--15835284	2	16.0	2	100	0	64	50	0	0	50	1.00
15836298--15836332	18	2.0	17	88	5	52	25	0	17	57	1.40
15836095--15836476	172	2.2	172	96	1	705	32	0	17	49	1.49
15836509--15836545	17	2.2	17	90	4	58	29	0	10	59	1.31
15837256--15837350	30	3.2	30	71	14	97	38	6	10	44	1.64
15838308--15838400	43	2.2	42	84	5	116	31	10	9	48	1.70
15838960--15839096	45	3.0	45	94	0	229	31	26	21	20	1.98
15839090--15839129	21	2.0	21	95	5	73	20	37	15	27	1.92
15839355--15839427	28	2.6	28	86	0	110	47	28	1	21	1.59
15839352--15839427	7	10.9	7	79	10	66	46	28	1	23	1.61
15843033--15843068	18	2.0	18	88	0	54	5	30	2	61	1.33
15846129--15846174	24	1.9	24	81	0	56	13	28	10	47	1.76
15849935--15850128	29	6.7	29	71	17	109	35	3	29	32	1.73
15849998--15850158	29	5.4	29	71	14	114	40	3	23	32	1.70
15849936--15850189	59	4.3	58	82	5	237	36	3	27	32	1.74
15850141--15850203	31	2.0	33	85	14	89	38	4	25	31	1.77
15850146--15850300	30	5.2	29	77	10	143	40	1	18	38	1.62
15850146--15850300	60	2.6	59	80	6	177	40	1	18	38	1.62
15851345--15851392	25	2.0	23	84	8	60	47	2	0	50	1.12
15852105--15852190	6	14.8	6	78	7	97	53	1	1	44	1.15
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15852116--15852190	17	4.4	17	87	1	114	54	1	1	42	1.17
15852247--15852290	20	2.2	19	81	18	54	65	2	0	31	1.05
15852257--15852304	20	2.5	19	83	12	62	64	2	2	31	1.16
15852355--15852408	4	13.0	4	81	14	65	0	27	1	70	0.98
15852355--15852407	21	2.5	21	84	6	72	0	28	1	69	0.99
15852496--15852534	19	2.1	19	95	0	69	69	17	0	12	1.19
15860774--15860823	20	2.5	20	80	6	57	52	4	0	44	1.20
15863654--15863804	19	7.8	19	64	10	65	45	19	6	28	1.75
15865743--15865798	23	2.5	22	72	13	53	51	0	5	42	1.24
15869077--15869109	12	2.7	13	90	9	52	69	0	0	30	0.88
15872903--15872952	12	4.1	12	76	19	50	60	0	0	40	0.97
15872904--15872951	24	2.0	25	88	12	73	58	0	0	41	0.98
15876670--15876717	18	2.5	20	80	16	57	33	0	4	62	1.14
15881928--15881967	20	2.0	20	100	0	80	25	40	15	20	1.90
15884809--15884861	23	2.3	23	83	3	61	22	7	5	64	1.41
15897132--15897181	20	2.4	21	81	15	52	40	8	2	50	1.43
15898966--15898996	15	2.1	15	93	0	53	70	3	19	6	1.22
15899133--15899174	11	3.9	11	84	3	59	52	0	0	47	1.00
15901937--15901975	19	2.2	17	86	9	51	15	0	7	76	0.99
15902121--15902676	40	14.0	41	82	6	515	25	17	24	33	1.96
15902402--15902488	38	2.3	38	93	0	147	32	13	17	36	1.89
15906619--15906670	22	2.4	22	87	6	70	50	7	9	32	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15908359--15908510	29	5.2	29	65	20	82	35	1	26	36	1.65
15908496--15908578	28	2.8	30	68	23	75	33	1	26	38	1.64
15908314--15909030	59	12.3	58	85	6	927	34	1	29	33	1.68
15910880--15910954	6	13.0	6	73	18	52	42	0	6	50	1.28
15910910--15910965	17	3.4	17	87	7	71	50	1	3	44	1.29
15910921--15910978	23	2.5	24	80	5	57	51	3	1	43	1.28
15922658--15922849	96	2.0	95	86	1	267	45	8	14	31	1.75
15925102--15925137	14	2.6	14	90	0	54	38	8	25	27	1.84
15928701--15928734	17	2.0	17	100	0	68	17	41	17	23	1.90
15931237--15931296	2	30.0	2	100	0	120	50	0	0	50	1.00
15954813--15954839	12	2.2	12	100	0	54	59	0	0	40	0.98
15954811--15954850	16	2.6	16	84	7	57	57	0	0	42	0.98
15955158--15955199	16	2.6	17	82	14	54	28	4	14	52	1.62
15959808--15959898	34	2.7	34	92	0	146	40	9	12	37	1.76
15960722--15960788	7	9.6	7	91	0	71	0	46	13	40	1.43
15960723--15960785	14	4.4	14	87	2	81	0	47	12	39	1.42
15960722--15960785	21	3.0	21	86	2	92	0	48	12	39	1.41
15963470--15963521	19	2.7	19	82	11	61	36	0	3	59	1.16
15963470--15963541	20	3.7	20	83	10	78	36	0	4	59	1.17
15963477--15963541	19	3.4	19	83	10	71	36	0	3	60	1.13
15963887--15963950	21	3.1	21	74	12	53	64	3	3	29	1.24
15967126--15967164	6	6.5	6	96	0	69	82	0	15	2	0.79
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15971309--15971498	94	2.0	94	98	0	371	32	12	17	37	1.87
15981441--15981472	9	3.6	9	100	0	64	21	0	21	56	1.43
15983987--15984023	19	1.9	19	88	0	56	43	0	29	27	1.55
15985617--15985707	45	2.0	45	100	0	182	40	13	28	17	1.87
15993301--15993340	20	2.0	20	100	0	80	35	35	10	20	1.86
15996995--15997229	99	2.4	98	86	1	326	18	26	16	38	1.92
15996938--15997219	148	1.9	148	82	1	350	18	25	17	37	1.93
15996927--15997235	49	6.3	49	71	8	223	18	25	18	38	1.93
16005422--16005470	18	2.7	18	78	9	55	40	6	4	48	1.47
16005480--16005519	17	2.5	16	92	8	64	37	0	10	52	1.35
16005803--16005840	20	1.9	20	89	10	60	47	23	0	28	1.52
16007327--16007568	30	8.0	30	90	2	342	38	23	2	36	1.67
16007327--16007613	60	4.8	60	86	4	346	38	22	2	36	1.68
16007327--16007626	90	3.3	89	87	6	408	38	24	2	35	1.68
16010354--16010393	20	2.0	20	100	0	80	35	35	10	20	1.86
16013168--16013219	18	2.9	18	80	5	52	26	17	44	11	1.83
16013474--16013499	13	2.0	13	100	0	52	30	0	15	53	1.42
16013623--16013648	13	2.0	13	100	0	52	30	7	7	53	1.57
16023160--16023196	17	2.1	18	90	5	58	10	0	8	81	0.89
16027058--16027120	27	2.3	27	83	0	72	25	12	23	38	1.90
16027797--16027849	21	2.5	21	90	0	79	20	7	33	37	1.81
16031803--16031904	27	3.7	27	86	1	132	23	18	25	32	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16043370--16043413	23	1.9	23	90	0	70	61	4	2	31	1.28
16043374--16043416	11	3.8	11	80	17	52	65	2	2	30	1.18
16044620--16044658	20	2.0	20	84	0	51	28	15	2	53	1.55
16050392--16050546	77	2.0	77	93	2	267	49	9	5	36	1.59
16051650--16051846	78	2.5	78	95	0	351	26	16	16	40	1.89
16066566--16066716	48	3.1	47	81	1	167	17	51	14	15	1.76
16073559--16073598	3	13.3	3	100	0	80	65	0	0	35	0.93
16078258--16078296	21	1.9	20	89	5	60	25	0	2	71	0.98
16082193--16082238	17	2.7	17	75	21	51	56	6	2	34	1.37
16082417--16082456	19	2.1	19	90	0	62	40	0	32	27	1.57
16086223--16086284	31	2.0	31	81	6	72	35	14	9	40	1.79
16086858--16086916	31	1.9	31	85	0	82	50	3	5	40	1.41
16095890--16095962	34	2.1	34	84	0	92	30	10	24	34	1.90
16111241--16111284	22	2.0	22	81	4	52	72	2	2	22	1.07
16132527--16132580	27	2.0	27	92	0	90	33	18	33	14	1.92
16132757--16132793	4	9.8	4	82	11	51	81	0	18	0	0.70
16132758--16132796	19	2.1	19	95	0	69	82	0	17	0	0.68
16132786--16132831	10	4.8	10	78	10	51	60	0	36	2	1.09
16133174--16133216	21	2.1	21	86	4	61	25	2	13	58	1.48
16133180--16133349	92	1.8	92	100	0	340	34	2	13	49	1.55
16133542--16133591	16	3.2	16	71	21	52	60	6	0	34	1.21
16135453--16135486	12	2.8	12	95	0	59	50	0	50	0	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
16137556--16137588	12	2.8	12	100	0	66	15	15	24	45	1.84
16138298--16138364	4	16.5	4	77	9	64	1	32	0	65	1.02
16138546--16138597	27	1.9	27	88	0	77	11	28	21	38	1.88
16140695--16140726	15	2.1	16	94	5	57	65	15	18	0	1.27
16142190--16142236	18	2.5	20	79	10	62	38	4	0	57	1.18
16143338--16143369	15	2.1	15	94	0	55	34	0	0	65	0.93
16145003--16145040	13	3.0	13	84	7	51	76	0	0	23	0.79
16145035--16145065	2	16.0	2	93	6	55	48	0	0	51	1.00
16150016--16150100	32	2.6	33	80	10	95	41	2	2	54	1.26
16153858--16153937	23	3.4	23	81	11	92	42	20	7	30	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135