genome.fa.s10.2.7.7.80.10.50.1000.23.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  23  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9701149--9701217	31	2.3	31	82	9	81	42	0	1	56	1.08
9701324--9701397	35	2.1	35	97	0	139	37	12	12	37	1.80
9705262--9705295	17	1.9	18	88	5	52	14	8	2	73	1.19
9706718--9706751	4	8.5	4	100	0	68	50	23	0	26	1.50
9709233--9709672	114	3.8	114	77	6	415	25	18	21	33	1.97
9713551--9713589	18	2.2	18	86	4	53	76	2	0	20	0.90
9718813--9718878	32	2.1	32	97	0	123	43	19	6	30	1.75
9720308--9720373	2	33.0	2	100	0	132	50	0	0	50	1.00
9737590--9737635	9	4.8	9	82	12	56	56	2	2	39	1.24
9737594--9737644	20	2.5	21	83	3	68	52	1	3	41	1.31
9737590--9737643	9	5.4	10	79	18	51	55	1	3	38	1.28
9737638--9737768	60	2.2	59	79	5	145	38	10	6	44	1.64
9739241--9739298	15	3.8	15	71	13	55	27	1	0	70	0.97
9742030--9742161	55	2.5	55	81	6	146	46	15	15	21	1.83
9746422--9746463	15	2.6	16	81	11	50	33	11	0	54	1.37
9746547--9746594	26	1.9	24	87	8	69	39	2	4	54	1.32
9747406--9747500	6	16.0	6	70	14	72	47	2	1	49	1.20
9747451--9747500	21	2.3	23	89	6	77	50	2	0	48	1.12
9747406--9747516	17	6.3	17	81	8	105	46	1	1	49	1.22
9747434--9747516	38	2.1	40	84	8	109	48	1	1	49	1.16
9748067--9748103	19	2.0	19	89	5	58	56	16	16	10	1.66
9759529--9759565	19	2.0	19	89	5	58	56	16	16	10	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9772436--9772510	34	2.2	35	82	2	89	46	2	2	48	1.30
9773292--9773332	21	2.0	21	90	9	66	53	17	9	19	1.70
9773286--9773372	22	3.9	23	75	10	74	55	17	12	14	1.70
9773590--9773633	23	1.9	23	90	0	70	38	25	15	20	1.92
9776623--9776675	23	2.5	20	74	14	54	52	0	1	45	1.11
9783742--9783787	24	1.9	24	82	8	58	47	19	6	26	1.73
9783876--9783927	2	26.0	2	96	0	95	50	1	0	48	1.12
9784836--9784903	16	4.2	16	84	5	84	45	4	1	48	1.31
9785388--9785429	21	2.0	21	86	9	59	38	2	0	59	1.10
9788000--9788027	5	5.6	5	100	0	56	0	17	0	82	0.68
9793547--9793601	21	2.7	20	77	8	56	65	0	3	30	1.10
9793551--9793598	21	2.2	22	85	7	62	68	0	4	27	1.07
9802416--9802468	21	2.6	20	82	11	63	18	7	0	73	1.06
9802424--9802476	21	2.6	19	82	14	61	15	9	0	75	1.04
9803428--9803493	20	3.3	20	74	14	57	68	0	4	27	1.09
9803464--9803587	56	2.2	59	86	7	175	59	3	6	30	1.38
9803803--9803872	36	2.0	36	86	8	99	34	4	2	58	1.32
9803850--9803894	19	2.3	20	81	11	58	44	0	2	53	1.13
9803849--9803892	18	2.4	17	85	11	52	45	0	2	52	1.13
9803979--9804175	90	2.1	93	86	3	274	33	7	20	38	1.80
9813556--9813601	23	2.0	23	100	0	92	47	0	4	47	1.21
9814279--9814340	29	2.3	27	86	10	90	53	4	1	40	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9814745--9814778	16	2.2	16	89	5	52	0	11	11	76	1.02
9821512--9821556	22	2.2	21	84	11	58	53	0	4	42	1.21
9821875--9821908	16	2.1	16	88	0	50	44	0	2	52	1.16
9823175--9823215	22	2.0	22	86	13	61	63	0	2	34	1.08
9836198--9836236	17	2.3	17	86	0	51	15	10	25	48	1.76
9836640--9836668	6	4.8	6	100	0	58	13	51	0	34	1.42
9837175--9837214	19	2.1	19	85	0	53	22	15	7	55	1.65
9838932--9838970	21	1.9	20	84	5	51	7	12	0	79	0.93
9841976--9842015	16	2.5	17	80	19	50	35	5	0	60	1.19
9850469--9850506	5	8.0	5	85	11	53	60	2	0	36	1.11
9857460--9857774	158	2.0	158	89	1	488	31	24	23	20	1.98
9869545--9869601	20	3.2	16	71	20	51	47	0	0	52	1.00
9869617--9869651	15	2.2	17	90	10	56	60	2	0	37	1.12
9869684--9869739	15	3.5	15	73	17	58	51	1	0	46	1.11
9872179--9872206	10	2.8	10	100	0	56	7	50	0	42	1.30
9887461--9887522	24	2.6	24	92	0	106	25	16	11	46	1.80
9888670--9888699	8	3.8	8	95	0	51	36	0	0	63	0.95
9897280--9897331	24	2.2	24	89	0	77	61	5	9	23	1.48
9901322--9901375	22	2.4	23	84	9	67	55	1	3	38	1.28
9903458--9903520	33	1.9	34	87	6	94	61	1	3	33	1.21
9904069--9904141	31	2.3	35	80	20	88	45	0	2	52	1.15
9904630--9904685	28	2.0	29	83	10	73	23	7	8	60	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9905267--9905325	15	4.0	15	70	10	50	28	6	8	55	1.55
9905326--9905407	23	3.5	23	78	5	69	39	18	9	32	1.83
9906090--9906137	14	3.3	14	78	18	53	58	2	0	39	1.10
9906093--9906137	16	2.9	16	80	9	58	57	2	0	40	1.11
9906481--9906543	22	2.9	21	80	15	58	69	1	11	17	1.25
9907340--9907381	19	2.2	19	83	8	50	59	4	0	35	1.19
9907588--9907634	24	2.0	22	88	8	67	44	6	4	44	1.49
9915074--9915115	22	1.9	22	85	0	57	54	0	0	45	0.99
9918549--9918836	30	9.7	31	85	8	255	35	3	25	36	1.72
9918600--9918836	60	4.0	60	86	1	350	36	3	23	36	1.72
9918566--9918836	90	3.0	89	87	4	388	35	3	23	36	1.72
9920552--9920582	16	1.9	16	93	0	53	12	6	58	22	1.58
9920758--9920857	6	16.8	6	76	13	91	51	1	1	47	1.14
9920784--9920885	16	6.4	16	77	11	95	54	2	0	41	1.22
9920783--9920862	31	2.5	32	85	4	108	56	2	1	40	1.21
9920802--9920881	23	3.1	27	68	28	66	57	2	0	40	1.12
9928655--9928701	17	3.0	15	74	20	51	48	0	2	48	1.13
9941702--9941727	2	13.0	2	100	0	52	50	0	50	0	1.00
9943172--9943237	28	2.4	26	76	16	62	51	1	1	45	1.19
9943636--9943692	28	2.0	29	86	3	80	43	3	7	45	1.48
9943820--9943868	24	2.0	24	84	7	64	24	6	0	69	1.11
9946562--9946705	49	3.0	48	83	4	173	27	14	6	52	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9950182--9950214	16	2.1	16	100	0	66	39	0	36	24	1.56
9953483--9953519	15	2.4	16	82	13	51	64	2	13	18	1.39
9955186--9955236	15	3.5	15	72	5	59	25	13	43	17	1.86
9955151--9955235	29	3.0	29	85	1	100	23	12	40	23	1.89
9955416--9955454	12	3.3	12	85	3	53	56	0	2	41	1.13
9957271--9957314	21	2.1	21	83	8	54	45	2	0	52	1.13
9957607--9957631	2	12.5	2	100	0	50	48	0	0	52	1.00
9960713--9960737	3	8.3	3	100	0	50	32	0	0	68	0.90
9961958--9962019	30	2.1	30	90	0	97	59	12	1	25	1.43
9962000--9962028	12	2.5	12	94	5	51	68	0	0	31	0.89
9972904--9972974	5	14.2	5	73	14	58	73	2	2	21	1.09
9972906--9972978	23	3.0	23	80	20	78	71	2	4	21	1.16
9972904--9972974	18	3.9	17	71	12	61	73	2	2	21	1.09
9974407--9974445	20	2.0	20	94	0	69	35	0	2	61	1.10
9977865--9977889	2	12.5	2	100	0	50	52	0	0	48	1.00
9990732--9990759	14	2.0	14	100	0	56	42	7	0	50	1.30
9990855--9990893	17	2.3	17	91	8	62	43	0	0	56	0.99
9990855--9990893	9	4.6	8	84	9	51	43	0	0	56	0.99
9990884--9990914	16	1.9	16	93	0	53	41	0	0	58	0.98
9990943--9990983	21	2.0	21	85	0	55	41	4	0	53	1.22
9991070--9991111	19	2.1	21	82	8	52	47	7	4	40	1.52
9991957--9992013	3	19.3	3	89	10	91	66	0	0	33	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
9993051--9993110	20	3.1	19	81	9	77	38	25	21	15	1.92
9993072--9993135	27	2.4	27	82	10	78	32	28	21	17	1.96
9993123--9993171	10	4.8	10	76	2	53	24	28	26	20	1.99
9993208--9993237	15	2.0	15	93	0	51	20	3	33	43	1.68
9993221--9993288	21	3.2	21	91	2	109	22	0	33	44	1.53
9993657--9993704	20	2.4	21	83	10	57	70	0	20	8	1.12
9999074--9999106	3	11.3	3	87	6	50	66	0	3	30	1.06
10000151--10000220	13	5.3	13	76	10	70	37	25	21	15	1.93
10000151--10000227	7	11.6	7	78	9	72	35	25	23	15	1.94
10000148--10000227	20	4.1	20	90	1	126	37	25	22	15	1.93

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135