genome.fa.s10.2.7.7.80.10.50.1000.130.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  130  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42227365--42227483	28	4.3	26	71	13	96	44	10	11	32	1.76
42232087--42232136	24	2.2	24	82	7	59	50	4	0	46	1.20
42234948--42235008	30	2.0	30	96	0	113	27	3	27	40	1.72
42237664--42237703	20	2.0	20	85	9	55	20	5	7	67	1.34
42245017--42245041	2	12.5	2	100	0	50	48	0	0	52	1.00
42255567--42255624	31	1.9	31	96	3	109	34	1	6	56	1.36
42261399--42261428	9	3.3	9	90	0	51	46	13	10	30	1.75
42261528--42261564	19	2.0	19	89	5	58	56	0	0	43	0.99
42261614--42261663	10	5.0	10	77	15	50	70	6	0	24	1.10
42266160--42266267	31	3.3	31	67	14	81	27	7	10	54	1.60
42266137--42266287	68	2.2	68	97	0	284	25	8	8	56	1.58
42266183--42266285	31	3.1	31	66	23	84	27	8	9	54	1.62
42266729--42266773	18	2.5	17	82	13	54	71	0	4	24	1.05
42267925--42267980	11	5.0	11	89	4	85	44	1	0	53	1.11
42267925--42267979	6	9.7	6	80	11	71	45	1	0	52	1.11
42267922--42267997	17	4.6	16	80	11	82	48	1	0	50	1.09
42268725--42268781	22	2.5	22	85	5	69	52	3	3	40	1.35
42268791--42268831	21	2.0	21	95	0	73	48	0	2	48	1.14
42269996--42270082	30	2.9	29	77	14	79	35	26	4	33	1.77
42270019--42270091	31	2.4	31	81	9	96	31	27	5	35	1.80
42281961--42283245	92	14.0	92	97	0	2405	32	15	19	32	1.93
42281961--42283256	275	4.7	275	97	0	2430	32	16	19	32	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42281961--42283245	367	3.5	368	97	0	2423	32	15	19	32	1.93
42283518--42283579	6	10.7	6	81	6	74	37	1	0	61	1.06
42283510--42283581	17	4.2	17	78	7	83	38	1	0	59	1.06
42283523--42283580	23	2.6	22	81	10	73	39	1	0	58	1.08
42283510--42283581	6	12.7	6	80	11	53	38	1	0	59	1.06
42283507--42283582	11	6.8	11	75	8	73	40	1	0	57	1.07
42284301--42284357	22	2.5	22	85	5	69	52	3	3	40	1.35
42284973--42285003	8	3.8	8	91	8	53	64	0	35	0	0.94
42284976--42285004	9	3.3	9	95	4	51	68	0	31	0	0.89
42285580--42285840	29	8.9	30	79	7	245	35	25	4	34	1.78
42285556--42285844	59	4.9	60	78	12	262	35	25	5	33	1.79
42285579--42285840	88	3.0	88	80	8	279	35	25	4	34	1.78
42287626--42287720	29	3.2	30	76	16	108	38	3	26	31	1.72
42287626--42287720	30	3.2	30	76	16	108	38	3	26	31	1.72
42287737--42287908	30	5.7	30	88	3	247	34	3	24	37	1.73
42287733--42287908	90	1.9	91	90	1	282	34	3	24	38	1.72
42288297--42288321	10	2.5	10	100	0	50	8	20	52	20	1.71
42289589--42289650	20	3.0	20	88	2	88	24	17	41	16	1.89
42289849--42289933	28	3.0	27	81	10	91	55	1	2	41	1.20
42289874--42289935	5	11.4	5	75	16	52	54	1	1	41	1.19
42289849--42289936	11	7.9	11	73	15	74	53	1	2	43	1.20
42289892--42289933	17	2.5	17	88	11	61	59	0	2	38	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42290308--42290703	31	11.5	30	65	23	103	26	20	17	34	1.95
42290274--42290754	137	3.5	136	86	8	682	27	20	18	34	1.95
42290226--42290754	212	2.5	210	89	4	811	27	20	17	34	1.95
42290341--42290672	106	3.1	105	70	20	346	27	21	16	34	1.95
42290274--42290754	68	6.9	67	87	7	660	27	20	18	34	1.95
42302659--42302797	58	2.4	59	79	3	156	34	7	30	27	1.84
42302701--42302795	29	3.2	29	70	16	88	36	4	27	31	1.76
42302694--42302830	58	2.4	58	83	4	170	33	4	30	31	1.77
42302867--42302921	19	3.3	19	63	36	54	29	3	27	40	1.73
42302805--42302983	30	6.0	30	92	2	263	32	3	27	36	1.73
42304651--42304689	20	2.0	20	89	0	60	20	17	46	15	1.84
42304893--42304977	28	3.0	27	81	10	91	54	1	3	41	1.25
42304893--42304980	11	7.9	11	71	15	65	52	1	3	43	1.25
42304936--42304980	17	2.8	16	83	6	63	53	0	4	42	1.21
42309407--42309434	1	28.0	1	100	0	56	0	0	100	0	0.00
42309834--42309885	15	3.3	15	79	10	50	55	1	25	17	1.52
42312165--42312234	36	1.9	35	86	11	97	41	1	15	41	1.56
42315352--42315623	148	1.8	148	85	4	388	32	16	15	35	1.90
42316020--42316064	19	2.4	19	81	7	56	37	0	4	57	1.19
42316865--42316907	22	2.0	22	86	9	61	20	6	0	72	1.08
42318735--42318799	28	2.3	28	89	0	94	21	10	24	43	1.84
42320952--42320996	14	2.9	16	80	16	58	53	0	0	46	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42325563--42325628	21	3.1	21	82	6	71	59	15	12	13	1.62
42325893--42325946	28	2.0	28	82	13	69	38	9	7	44	1.65
42325983--42326030	21	2.2	21	85	7	60	43	2	6	47	1.40
42327436--42327526	23	3.9	23	86	1	119	27	10	18	42	1.84
42339141--42339179	19	2.0	20	85	5	53	48	7	10	33	1.66
42343342--42343388	24	2.0	24	95	0	85	25	8	6	59	1.50
42343350--42343404	24	2.3	24	87	0	74	27	16	5	50	1.66
42344075--42344150	6	13.0	6	74	20	72	42	2	1	53	1.23
42344075--42344148	17	4.6	16	80	11	89	40	2	1	55	1.22
42344065--42344150	11	7.5	11	71	13	57	41	2	2	53	1.26
42344075--42344149	31	2.3	32	86	8	100	41	2	1	54	1.23
42344075--42344161	17	5.4	16	72	12	52	45	2	1	50	1.21
42344864--42344902	3	13.0	3	84	10	53	64	0	2	33	1.08
42344864--42344901	13	2.8	14	85	14	53	63	0	2	34	1.09
42345170--42345232	24	2.6	25	76	19	69	71	4	22	1	1.13
42345985--42346169	30	6.2	30	78	7	180	39	22	2	36	1.66
42345987--42346162	90	2.0	89	83	5	221	38	22	2	36	1.67
42346093--42346185	29	3.2	28	76	8	69	35	25	3	35	1.72
42348388--42348428	18	2.3	18	82	0	55	43	0	0	56	0.99
42350939--42350985	16	2.9	16	83	0	58	40	0	10	48	1.38
42373571--42373627	29	1.9	30	92	7	98	52	3	14	29	1.58
42374661--42374721	31	2.0	31	90	0	95	45	6	3	44	1.46
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42387119--42387160	12	3.4	12	81	15	50	61	0	2	35	1.09
42395021--42395280	129	2.0	130	94	0	459	46	19	10	23	1.80
42395587--42395630	18	2.4	18	85	7	54	68	0	4	27	1.09
42403482--42403551	36	1.9	36	85	5	97	30	17	14	38	1.89
42405502--42405539	15	2.4	17	86	8	53	21	5	7	65	1.38
42406262--42406286	13	1.9	13	100	0	50	68	0	0	32	0.90
42413824--42413883	28	2.1	28	84	0	75	26	11	31	30	1.92
42413929--42414080	30	5.2	30	72	21	142	35	4	26	32	1.77
42413837--42414118	58	4.8	58	83	5	311	34	5	28	31	1.80
42414835--42414860	13	2.0	13	100	0	52	46	7	15	30	1.74
42414914--42414982	6	11.7	6	72	9	61	53	0	4	42	1.20
42414899--42414958	24	2.5	23	78	2	57	55	3	3	38	1.33
42414880--42414947	18	3.9	17	77	9	66	51	2	1	44	1.25
42414899--42414982	41	2.0	42	86	2	116	53	2	3	40	1.31
42414938--42414982	17	2.6	18	85	3	65	53	0	4	42	1.21
42416552--42416810	129	2.0	129	96	0	473	47	18	10	23	1.80
42417117--42417160	18	2.4	18	85	7	54	68	0	4	27	1.09
42421613--42421662	25	2.0	25	92	3	84	30	12	16	42	1.84
42421773--42421849	40	1.9	40	86	0	109	45	5	7	41	1.55
42433856--42433880	3	8.3	3	100	0	50	68	0	0	32	0.90
42435079--42435145	28	2.4	28	100	0	134	49	25	13	11	1.76
42436507--42436533	5	5.4	5	100	0	54	18	62	18	0	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42437080--42437296	30	7.3	30	81	2	222	39	21	3	35	1.71
42437096--42437304	60	3.5	60	85	1	260	39	22	3	34	1.72
42437080--42437339	90	2.9	87	82	8	272	39	22	3	35	1.71
42437096--42437329	60	3.9	59	82	5	238	39	21	3	35	1.72
42437075--42437339	60	4.4	60	80	5	182	39	22	3	34	1.72
42437315--42437511	59	3.4	58	73	8	195	30	30	3	36	1.73
42449275--42449390	37	3.3	36	68	14	98	35	12	21	30	1.91
42449403--42450057	76	8.7	76	90	3	992	33	15	18	33	1.92
42449254--42450053	152	5.4	152	90	5	1095	33	15	18	32	1.92
42449254--42450057	228	3.6	228	86	7	1074	33	15	18	32	1.92

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135