genome.fa.s10.2.7.7.80.10.50.1000.131.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  131  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42450297--42450367	31	2.4	29	88	4	97	39	4	0	56	1.19
42450295--42450365	11	6.5	11	73	15	58	39	4	0	56	1.19
42450344--42450378	17	2.1	17	88	0	52	45	2	0	51	1.16
42450417--42450489	28	2.5	28	95	4	128	47	24	13	13	1.79
42450916--42451034	30	4.0	29	79	5	114	39	22	1	36	1.64
42450920--42451041	59	2.0	60	81	7	142	40	23	1	34	1.65
42451007--42451201	59	3.3	58	73	2	185	29	29	4	36	1.76
42460322--42460376	18	3.1	18	78	5	67	63	0	3	32	1.12
42471087--42471116	4	7.5	4	100	0	60	50	26	0	23	1.50
42474477--42475108	315	2.0	312	97	0	1183	39	17	12	30	1.86
42487423--42487499	37	2.1	37	97	0	145	53	20	12	12	1.72
42488887--42488955	31	2.2	32	82	5	88	33	15	10	40	1.81
42492704--42492847	43	3.3	43	78	10	134	30	25	18	26	1.98
42498894--42498957	18	3.2	20	82	13	87	56	0	3	40	1.15
42498988--42499306	34	9.6	33	70	16	214	42	0	9	46	1.43
42499054--42499102	4	12.5	4	82	4	55	53	0	0	46	1.00
42498972--42499186	92	2.3	92	95	1	376	46	0	7	44	1.38
42499148--42499189	20	2.2	18	91	8	66	59	0	0	40	0.97
42499125--42499546	70	5.9	69	70	15	300	41	0	8	49	1.39
42499058--42499268	104	2.0	103	82	8	250	43	0	8	46	1.40
42499286--42499327	18	2.2	18	91	8	66	61	0	0	38	0.96
42499366--42499394	4	7.2	4	100	0	58	48	0	0	51	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42499228--42499920	154	4.5	154	90	5	1085	42	0	8	47	1.40
42499388--42499460	34	2.1	34	80	5	94	38	1	12	47	1.50
42499440--42499481	20	2.2	18	91	8	66	59	0	0	40	0.97
42499520--42499548	4	7.2	4	100	0	58	48	0	0	51	1.00
42499542--42499614	34	2.1	34	77	5	85	38	1	10	49	1.47
42499594--42499657	18	3.2	21	82	17	91	57	0	1	40	1.08
42499766--42499791	8	3.2	8	100	0	52	61	0	0	38	0.96
42499754--42499808	16	4.1	12	77	22	56	50	0	1	47	1.11
42499772--42499882	50	2.3	47	81	9	125	45	0	9	45	1.35
42502218--42502291	24	3.4	24	63	24	63	16	25	24	33	1.95
42502197--42502480	41	6.9	41	81	8	244	19	25	19	35	1.95
42502198--42502478	123	2.3	123	77	9	295	19	25	19	35	1.96
42511781--42511832	15	3.2	15	73	19	50	44	0	1	53	1.11
42517821--42517845	13	1.9	13	100	0	50	0	20	8	72	1.10
42518820--42518935	40	2.9	40	94	1	198	29	23	16	31	1.96
42523806--42523886	40	2.0	40	97	0	153	29	20	17	32	1.96
42525143--42525180	16	2.2	18	86	9	53	31	0	13	55	1.38
42550598--42550848	58	4.3	58	82	8	285	36	3	23	36	1.72
42550624--42550888	29	9.0	29	81	7	250	35	3	25	35	1.74
42550600--42550859	89	2.9	89	82	7	266	36	3	24	35	1.73
42550654--42550892	60	4.1	56	78	11	205	35	3	26	34	1.75
42552050--42552100	21	2.5	21	77	3	59	37	1	0	60	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42552698--42552753	25	2.2	26	84	9	71	8	16	30	44	1.78
42552824--42552880	6	9.7	6	78	3	62	56	3	0	40	1.17
42552826--42552870	23	2.0	23	95	0	81	57	4	0	37	1.19
42552824--42552909	35	2.5	35	83	5	104	54	4	2	38	1.34
42553225--42554234	206	4.9	206	88	1	1307	22	22	19	35	1.96
42554550--42555190	92	7.0	92	94	0	1086	31	19	16	32	1.94
42554795--42554943	40	3.4	39	67	23	109	34	20	15	30	1.93
42556304--42556379	6	12.5	6	77	14	59	2	13	1	82	0.83
42556304--42556374	7	9.3	7	75	18	54	2	12	1	83	0.83
42556310--42556379	26	2.8	25	79	14	81	1	12	1	84	0.76
42556304--42556379	36	2.1	36	85	4	100	2	13	1	82	0.83
42559926--42560095	85	2.0	85	98	0	331	27	26	11	34	1.91
42562070--42562219	30	5.0	30	77	11	139	33	4	25	36	1.77
42562074--42562219	29	4.9	29	78	11	127	34	4	24	36	1.77
42562074--42562219	59	2.5	58	82	7	152	34	4	24	36	1.77
42564008--42564059	25	2.1	25	82	7	61	11	15	30	42	1.82
42564133--42564184	6	8.8	6	80	4	61	55	3	0	40	1.18
42564142--42564211	11	6.2	11	76	3	59	55	7	0	37	1.27
42564133--42564212	35	2.3	35	89	6	119	55	6	0	38	1.25
42565302--42565558	59	4.4	58	79	10	249	39	7	22	31	1.81
42565434--42565528	30	3.2	30	73	16	90	44	5	17	32	1.72
42565437--42565528	29	3.1	29	75	16	91	43	5	18	32	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42565303--42565559	118	2.2	117	82	6	317	39	7	22	30	1.81
42565540--42565798	29	8.9	29	74	5	157	34	3	27	33	1.74
42565540--42565670	28	4.6	27	78	14	113	32	1	29	36	1.67
42565688--42565800	59	1.9	60	81	3	140	37	6	25	30	1.81
42566555--42566597	17	2.7	16	82	7	52	4	20	0	74	1.00
42566889--42566976	39	2.3	39	88	4	124	23	26	28	21	1.99
42566909--42566995	39	2.2	39	81	4	104	31	22	25	20	1.98
42567104--42568150	92	11.4	92	92	1	1733	33	18	14	32	1.91
42568159--42568354	51	3.9	50	73	9	155	12	23	23	40	1.88
42568155--42568426	50	5.4	51	70	10	193	11	23	23	41	1.87
42568155--42568405	101	2.5	100	88	1	353	11	24	22	40	1.88
42568331--42568425	48	1.9	49	82	4	120	10	26	23	40	1.87
42569634--42569688	20	2.7	20	88	5	74	5	12	5	76	1.13
42574875--42575067	96	2.0	96	83	6	239	37	12	19	30	1.89
42575351--42575513	58	2.8	58	85	1	211	38	7	24	29	1.84
42575419--42575526	29	3.8	29	68	15	80	33	9	27	29	1.88
42575489--42575690	29	6.9	29	77	8	135	36	3	26	33	1.75
42575524--42575718	30	6.5	30	76	8	150	38	3	22	35	1.72
42575496--42575690	89	2.2	89	80	7	218	37	3	24	34	1.73
42577714--42577760	17	2.5	19	80	10	53	53	2	6	38	1.39
42581266--42581506	121	2.0	121	99	0	473	24	14	17	42	1.88
42584235--42584319	44	1.9	44	97	0	161	45	16	7	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42584239--42584311	23	3.3	23	66	21	64	45	17	5	31	1.72
42588624--42588662	20	2.0	20	84	0	51	56	0	0	43	0.99
42588670--42588735	31	2.2	29	81	7	78	63	6	1	28	1.27
42588701--42588767	21	3.3	21	69	21	61	62	4	2	29	1.29
42594646--42594705	23	2.8	20	79	18	66	50	5	0	45	1.23
42594666--42594711	23	2.0	23	91	4	76	47	8	0	43	1.34
42600912--42600985	11	7.0	11	71	21	52	37	0	2	59	1.12
42600913--42601005	6	16.2	6	72	12	79	40	1	2	55	1.19
42600913--42601005	17	5.4	17	85	2	132	40	1	2	55	1.19
42600924--42600985	23	2.7	23	80	14	74	38	0	3	58	1.15
42602764--42602936	29	5.9	29	81	8	181	35	24	2	37	1.69
42602764--42602927	58	2.8	59	83	7	210	35	25	2	37	1.69
42602767--42602927	87	1.8	88	82	6	211	36	23	2	37	1.69
42602774--42602966	87	2.2	87	78	4	192	34	24	3	37	1.72
42603075--42603127	16	3.1	17	74	15	56	22	0	1	75	0.90
42603074--42603121	25	1.9	25	87	8	71	25	0	2	72	0.95
42606633--42606676	3	14.7	3	95	0	79	65	0	2	31	1.05
42607734--42607814	7	11.9	7	78	10	87	33	24	24	17	1.96
42607731--42607814	34	2.5	33	84	7	105	35	23	23	16	1.95
42617251--42617943	209	3.3	209	89	1	1039	35	19	22	21	1.96
42619646--42619987	30	11.6	29	75	8	253	36	23	2	36	1.70
42619646--42619988	29	11.7	29	75	8	241	36	23	2	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
42619647--42620008	59	6.2	59	80	9	359	36	23	3	36	1.72
42619675--42620049	59	6.4	59	78	10	253	34	24	4	36	1.74
42620125--42620176	23	2.2	24	80	16	65	21	1	7	69	1.24
42631711--42631735	3	8.3	3	100	0	50	36	0	0	64	0.94
42640138--42640186	4	12.5	4	89	4	64	28	4	24	42	1.73
42640141--42640186	23	2.0	23	86	0	65	28	4	26	41	1.74
42640259--42640366	4	27.2	4	79	1	83	26	9	22	41	1.84
42640259--42640287	15	1.9	15	100	0	58	27	0	20	51	1.47
42640249--42640366	24	5.0	24	78	1	112	27	10	22	40	1.85
42640358--42640543	97	1.9	97	91	2	302	30	14	16	38	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135