genome.fa.s10.2.7.7.80.10.50.1000.52.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  52  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18364914--18365187	123	2.2	122	84	5	320	39	11	23	25	1.88
18382108--18382140	18	1.9	18	88	11	52	54	12	0	33	1.37
18383281--18383335	26	2.1	27	86	3	76	32	0	0	67	0.91
18385326--18385358	17	1.9	17	100	0	66	18	18	12	51	1.76
18390786--18390828	18	2.4	18	88	7	61	46	0	0	53	1.00
18407570--18407652	8	9.9	9	76	17	65	83	2	13	1	0.81
18407594--18407657	1	64.0	1	74	0	56	87	0	12	0	0.54
18407584--18407657	15	4.6	16	85	8	82	85	1	13	0	0.67
18407595--18407658	20	3.2	20	85	8	87	85	0	14	0	0.59
18407591--18407658	24	2.7	25	84	6	84	85	0	14	0	0.60
18407574--18407657	10	9.1	9	78	15	75	84	2	11	1	0.78
18408869--18409005	50	2.7	50	75	7	127	40	20	24	13	1.89
18409125--18410187	92	11.6	92	94	1	1857	32	16	19	32	1.94
18410791--18410831	11	3.7	11	93	0	64	36	2	4	56	1.34
18412787--18412903	30	3.9	29	81	5	110	34	25	2	37	1.70
18412799--18412927	30	4.3	30	80	7	122	34	26	4	34	1.77
18412799--18412970	30	5.8	29	74	11	118	32	26	6	34	1.82
18412920--18413053	59	2.3	59	86	2	198	30	20	8	40	1.83
18412920--18413079	59	2.7	57	83	4	187	30	19	8	41	1.81
18412920--18413109	59	3.2	59	81	6	156	31	20	7	41	1.79
18415610--18415644	15	2.2	16	90	5	54	60	0	0	40	0.97
18415678--18415729	15	3.2	15	73	19	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18418120--18418189	29	2.3	30	82	4	79	34	11	8	45	1.71
18425521--18425572	27	2.0	27	85	11	72	65	0	5	28	1.16
18426826--18426872	24	2.0	24	86	0	67	27	10	4	57	1.51
18429057--18429081	8	3.1	8	100	0	50	24	24	0	52	1.48
18431350--18431481	58	2.3	57	81	10	146	39	34	4	21	1.74
18440328--18440389	7	8.9	7	85	0	79	41	27	4	25	1.75
18440319--18440389	14	5.1	14	82	3	81	39	28	5	26	1.79
18440328--18440389	21	3.0	21	87	0	88	41	27	4	25	1.75
18453367--18453392	2	13.0	2	100	0	52	50	0	0	50	1.00
18458410--18458460	24	2.1	24	96	0	93	25	11	5	56	1.57
18460455--18460507	21	2.3	23	84	9	65	39	24	11	24	1.88
18461037--18461305	41	6.5	41	83	1	259	26	26	10	36	1.89
18461230--18461313	43	1.9	44	85	2	116	25	29	10	34	1.90
18462105--18462154	22	2.3	22	79	3	57	34	14	0	52	1.42
18462742--18462792	24	2.1	24	85	0	66	23	15	7	52	1.68
18462750--18462804	24	2.3	24	84	6	67	29	16	7	47	1.73
18464969--18465024	19	3.1	19	82	10	64	35	0	7	57	1.26
18469631--18469678	21	2.3	21	85	0	60	35	12	8	43	1.73
18471164--18471222	26	2.2	28	80	17	72	32	0	1	66	1.02
18484396--18484425	13	2.3	13	100	0	60	40	0	0	60	0.97
18501142--18501183	15	2.6	17	78	21	54	52	0	4	42	1.22
18507865--18507951	17	5.1	17	86	5	104	37	1	4	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18507860--18507959	6	16.8	6	70	13	55	40	1	4	55	1.26
18507872--18507951	34	2.3	35	87	4	119	37	1	5	56	1.29
18508535--18508582	10	4.8	10	80	10	62	43	0	0	56	0.99
18508534--18508582	19	2.5	20	83	6	64	42	0	0	57	0.99
18508534--18508589	19	2.8	19	77	22	53	41	0	1	57	1.09
18509641--18509874	30	7.9	29	81	7	215	35	23	2	38	1.68
18509644--18509874	60	3.9	59	80	8	238	36	22	2	38	1.68
18509655--18509965	29	10.6	29	80	10	244	35	23	3	36	1.73
18509917--18509975	29	2.0	29	83	6	75	33	25	5	35	1.78
18515468--18515518	17	3.0	16	83	11	57	82	0	13	3	0.81
18515468--18515518	8	6.0	8	80	13	57	82	0	13	3	0.81
18515468--18515545	7	11.0	7	76	10	70	79	0	15	5	0.90
18515493--18515545	22	2.4	21	90	6	79	79	0	16	3	0.88
18516126--18516153	12	2.3	12	100	0	56	50	14	28	7	1.69
18516430--18516774	50	7.0	50	75	6	301	31	17	33	17	1.93
18516427--18516774	98	3.5	99	84	2	398	31	17	32	17	1.94
18516427--18516808	197	1.9	198	79	4	432	33	17	31	17	1.93
18517052--18517591	39	13.9	37	67	17	188	23	30	20	25	1.99
18517052--18517599	78	7.0	78	80	1	596	23	30	20	25	1.98
18518094--18518180	17	5.1	17	84	5	104	36	1	4	57	1.27
18518096--18518188	6	15.8	6	69	11	50	38	1	4	55	1.26
18518094--18518178	35	2.5	33	88	7	125	36	1	4	57	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18518767--18518814	10	4.8	10	80	10	62	43	0	0	56	0.99
18518766--18518814	19	2.5	20	83	6	64	42	0	0	57	0.99
18518766--18518821	19	2.8	19	77	22	53	41	0	1	57	1.09
18519917--18520203	30	9.7	29	78	9	251	36	22	3	36	1.73
18519917--18520203	60	4.8	60	81	6	320	36	22	3	36	1.73
18519912--18520203	89	3.3	90	80	8	278	35	23	4	36	1.74
18520135--18520236	28	3.6	28	76	8	84	38	28	4	28	1.78
18519917--18520237	30	11.0	28	76	12	170	36	23	4	35	1.74
18520173--18520280	29	3.8	28	76	10	94	37	25	4	32	1.77
18523141--18523343	60	3.5	59	85	8	283	48	7	9	34	1.63
18523320--18523401	40	2.0	40	100	0	164	48	12	7	31	1.68
18525122--18525175	21	2.6	21	84	0	63	38	25	5	29	1.79
18525861--18526098	120	2.0	120	91	0	386	30	24	15	29	1.96
18529029--18529074	25	1.9	25	86	8	69	32	4	6	56	1.45
18532939--18532981	18	2.3	18	80	11	52	23	4	0	72	1.04
18532981--18533025	10	4.4	10	91	2	72	73	0	6	20	1.05
18533045--18533079	11	3.1	11	88	8	52	22	2	0	74	0.95
18533987--18534035	21	2.4	20	86	3	62	79	4	8	8	1.04
18535071--18535116	25	1.9	25	86	8	69	32	4	6	56	1.45
18538250--18538544	28	11.1	28	66	12	122	35	16	26	21	1.95
18538252--18538544	52	5.6	52	73	10	202	35	16	26	21	1.95
18538250--18538509	80	3.2	80	82	1	306	35	16	26	20	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18545785--18546246	59	7.8	59	83	4	556	50	7	8	33	1.60
18545785--18546245	118	3.9	119	87	4	646	50	7	8	33	1.60
18547259--18547283	7	3.6	7	100	0	50	60	0	0	40	0.97
18548951--18549036	26	3.2	26	78	5	82	68	0	6	24	1.14
18549391--18549425	17	2.0	18	88	5	54	22	2	0	74	0.95
18549442--18549487	19	2.4	20	86	13	62	39	2	0	58	1.10
18549551--18549595	20	2.3	20	88	3	65	40	0	0	60	0.97
18549559--18549636	35	2.2	35	81	4	86	35	2	1	60	1.19
18549570--18549638	35	2.0	36	85	5	97	31	2	1	63	1.18
18549615--18549674	9	6.7	9	75	19	54	26	5	1	66	1.21
18549616--18549714	30	3.4	29	72	10	87	25	5	4	65	1.30
18560751--18560787	17	2.2	17	90	9	58	67	10	16	5	1.38
18561592--18561660	26	2.6	26	80	11	77	68	4	0	27	1.09
18566692--18566762	24	3.0	24	87	0	79	19	26	18	35	1.95
18570608--18570723	36	3.1	37	76	12	96	62	5	1	30	1.26
18570600--18570754	10	16.4	9	72	18	95	61	5	1	30	1.28
18570648--18570761	50	2.3	50	82	11	128	60	4	2	32	1.30
18570648--18570761	10	11.4	10	75	7	97	60	4	2	32	1.30
18571518--18571659	46	3.2	45	71	23	149	35	1	4	59	1.26
18571518--18571680	48	3.7	46	71	23	143	35	1	3	59	1.23
18571506--18571712	85	2.4	86	90	4	330	34	0	3	60	1.22
18571517--18571633	17	6.8	18	68	26	67	35	0	4	59	1.23
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18571535--18571641	37	2.8	39	76	17	109	36	0	3	58	1.22
18571514--18571719	9	22.0	9	70	21	99	34	0	3	61	1.19
18571553--18571717	10	17.3	10	68	21	63	33	1	3	61	1.19
18573480--18573950	235	2.0	235	99	0	924	23	14	31	30	1.95
18574107--18574157	21	2.4	21	83	0	75	54	11	3	29	1.54
18575664--18575711	25	2.0	24	84	12	62	39	8	12	39	1.73
18581248--18581322	21	3.6	21	71	16	66	33	26	12	28	1.92
18588942--18589036	27	3.4	29	84	11	110	33	15	9	41	1.80
18589118--18589194	23	3.5	22	71	18	70	59	12	0	27	1.34
18589135--18589201	23	3.2	19	78	15	62	64	11	0	23	1.27

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135