genome.fa.s10.2.7.7.80.10.50.1000.50.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  50  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17789236--17789282	21	2.2	22	92	3	78	44	34	0	21	1.52
17789266--17789295	15	2.0	15	93	0	51	43	33	3	20	1.68
17789332--17789376	21	2.2	20	84	11	56	15	20	31	33	1.93
17789397--17789465	20	3.5	20	91	0	120	14	24	23	37	1.92
17789397--17789455	13	4.5	13	77	8	57	15	25	23	35	1.94
17789404--17789462	7	8.7	7	79	7	68	15	27	23	33	1.95
17804531--17804577	5	9.2	5	92	2	67	0	25	0	74	0.82
17806194--17806223	5	6.0	5	100	0	60	40	20	20	20	1.92
17812359--17812428	33	2.1	33	97	0	131	44	14	14	27	1.83
17814811--17814866	27	2.0	28	82	3	69	62	1	5	30	1.28
17817330--17817376	24	2.0	24	86	0	67	46	2	2	48	1.25
17819895--17819920	13	2.0	13	100	0	52	30	23	23	23	1.99
17820752--17820822	31	2.2	32	85	9	92	26	11	5	56	1.56
17820767--17820840	30	2.4	31	78	10	80	31	12	9	47	1.73
17821565--17821616	22	2.3	23	90	3	79	48	0	0	51	1.00
17821572--17821616	19	2.4	19	82	10	58	51	0	0	48	1.00
17821568--17821629	22	3.0	20	80	11	72	48	0	0	51	1.00
17826704--17826825	61	2.0	61	93	0	208	23	21	24	30	1.99
17830236--17830283	24	2.0	24	87	0	69	31	2	0	66	1.03
17830241--17830295	24	2.3	24	80	0	65	30	3	3	61	1.30
17832400--17832449	23	2.2	22	79	10	57	28	6	4	62	1.37
17833784--17834708	309	3.0	306	83	3	1067	35	14	17	32	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17833784--17834708	307	3.0	304	82	3	1088	35	14	17	32	1.90
17835147--17835202	21	2.7	21	77	5	60	32	28	7	32	1.84
17840984--17841016	17	1.9	17	93	0	57	72	0	0	27	0.85
17841790--17841842	18	2.9	18	86	5	72	45	0	0	54	0.99
17846037--17846102	30	2.2	30	97	0	123	40	16	19	22	1.91
17848748--17848777	15	2.1	15	93	6	53	16	6	0	76	0.99
17850447--17850476	13	2.2	14	94	5	53	43	6	0	50	1.28
17853815--17853849	18	1.9	18	88	0	52	51	8	34	5	1.56
17862856--17862914	6	10.0	6	90	1	93	45	0	54	0	0.99
17867545--17867596	27	1.9	27	100	0	104	13	19	21	46	1.84
17885080--17885118	19	2.0	20	85	5	53	76	5	15	2	1.06
17885381--17885423	15	2.9	15	85	0	59	76	2	18	2	1.00
17885696--17885721	2	13.0	2	100	0	52	50	0	0	50	1.00
17888781--17888825	6	7.5	6	89	0	63	46	0	31	22	1.52
17892741--17892780	18	2.2	18	95	0	71	20	12	30	37	1.89
17895284--17895320	18	2.2	18	85	9	51	54	2	2	40	1.29
17895302--17895339	20	1.9	20	88	0	58	52	2	2	42	1.29
17901500--17901563	31	2.1	31	97	2	121	37	25	12	25	1.91
17907898--17907958	25	2.5	25	83	2	79	37	4	6	50	1.50
17909716--17909748	16	2.1	16	88	11	50	36	9	0	54	1.32
17910145--17910190	24	1.9	24	82	8	58	28	15	8	47	1.74
17912089--17912119	1	31.0	1	100	0	62	0	100	0	0	0.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17913851--17913919	2	35.0	2	97	2	131	0	49	0	50	1.00
17914857--17915164	109	2.9	103	80	5	278	36	17	14	31	1.90
17915319--17915360	14	3.0	14	80	13	50	73	7	0	19	1.05
17915497--17915650	30	5.1	30	75	6	123	35	5	25	34	1.78
17915511--17915649	61	2.3	60	80	2	143	33	5	25	35	1.78
17916272--17916495	112	2.0	115	89	2	346	37	11	20	30	1.88
17920482--17920565	42	2.0	42	90	4	134	47	22	0	29	1.52
17922968--17923008	14	3.0	14	76	16	50	73	9	0	17	1.09
17923145--17923326	30	6.1	30	76	8	174	35	6	24	33	1.80
17923147--17923318	60	2.9	59	81	7	195	37	6	22	33	1.80
17929269--17929307	16	2.4	16	83	8	53	15	5	20	58	1.55
17930733--17930772	17	2.3	18	87	12	57	62	2	0	35	1.09
17933540--17933608	31	2.4	28	79	13	77	43	7	5	43	1.56
17934072--17934098	12	2.2	12	100	0	54	25	37	11	25	1.89
17944798--17944832	6	5.8	6	89	0	52	34	42	0	22	1.54
17948983--17949091	10	11.3	9	72	14	76	61	3	3	31	1.31
17949002--17949067	29	2.3	29	78	5	71	63	6	3	27	1.32
17948998--17949082	19	4.4	18	76	12	62	61	4	3	30	1.33
17949375--17949432	3	19.3	3	96	0	107	32	1	0	65	1.03
17949719--17949764	24	1.9	24	82	8	58	30	2	6	60	1.34
17949779--17949882	29	3.6	30	80	12	85	31	0	6	61	1.22
17949697--17949934	10	24.7	9	67	20	99	30	0	6	61	1.27
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
17949750--17949851	19	5.3	18	71	20	64	30	0	8	60	1.27
17949750--17949915	48	3.5	47	79	8	156	30	0	7	61	1.29
17949836--17949946	19	5.8	19	71	13	75	28	1	3	65	1.19
17949826--17949903	28	2.8	28	77	9	88	28	0	6	65	1.17
17949834--17949925	28	3.2	29	78	9	100	29	1	4	65	1.19
17964249--17965237	494	2.0	493	92	1	1658	28	21	15	33	1.95
17976356--17976503	56	2.7	55	86	5	199	33	6	12	46	1.69
17979841--17979870	15	2.0	15	100	0	60	0	26	33	40	1.57
17980575--17980633	26	2.3	26	90	0	91	45	10	20	23	1.81
17980730--17980760	16	1.9	16	93	0	53	48	16	6	29	1.70
17982544--17982583	17	2.3	18	86	8	64	50	17	0	32	1.47
17996301--17996358	23	2.5	24	81	10	68	44	22	24	8	1.80
17996858--17996909	15	3.2	15	73	19	50	44	0	1	53	1.11
17996942--17996978	16	2.3	16	86	13	58	40	0	0	59	0.97
17998900--17999046	46	3.2	46	84	0	186	24	19	25	31	1.98
18002716--18002856	55	2.5	53	79	6	147	26	26	26	20	1.99
18005737--18005763	14	1.9	14	100	0	54	88	7	3	0	0.61
18008602--18008672	20	3.5	20	82	3	97	39	23	21	15	1.91
18008626--18008674	7	7.1	7	88	4	64	38	26	18	16	1.91
18008615--18008674	14	4.5	13	81	8	66	40	25	20	15	1.90
18008625--18008699	27	2.7	27	87	2	96	38	22	21	17	1.93
18008608--18008711	34	3.1	34	76	8	113	40	20	22	17	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18015807--18015862	27	2.1	27	86	0	76	46	17	17	17	1.85
18015838--18015908	34	2.1	34	89	0	106	30	21	26	21	1.98
18015808--18015895	20	4.3	20	75	11	72	40	18	20	20	1.91
18015838--18015908	7	10.4	7	72	6	56	30	21	26	21	1.98
18015922--18015951	11	2.7	11	94	0	51	26	26	26	20	1.99
18015897--18015949	22	2.4	22	77	0	61	28	28	26	16	1.97
18018461--18018523	22	3.0	21	77	13	83	28	15	15	39	1.89
18018454--18018546	43	2.2	43	86	3	134	24	17	17	40	1.90
18051423--18051500	31	2.5	31	85	4	95	26	16	11	44	1.82
18051509--18051581	30	2.4	31	86	8	105	21	17	12	47	1.80
18051444--18051581	31	4.6	29	73	17	113	21	15	13	48	1.80
18055076--18055126	24	2.1	24	82	7	59	52	3	1	41	1.31
18066685--18066724	19	2.1	19	90	0	62	30	2	0	67	1.04
18067211--18067251	19	2.2	19	82	13	57	46	0	2	51	1.14
18067213--18067251	18	2.1	19	90	4	62	46	0	2	51	1.14
18067211--18067252	20	2.0	20	86	9	57	47	0	2	50	1.14
18068958--18068987	16	1.9	15	93	6	51	60	10	0	30	1.30
18069447--18069487	3	13.7	3	100	0	82	31	34	0	34	1.58
18074355--18074388	3	11.3	3	100	0	68	0	32	0	67	0.91
18074993--18075032	3	13.3	3	100	0	80	67	0	32	0	0.91
18080956--18081037	21	3.9	21	74	6	85	29	21	20	28	1.98
18083907--18083993	8	10.6	8	72	13	70	55	2	2	40	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
18083907--18083974	17	4.0	17	77	9	68	55	2	2	38	1.30
18083958--18084013	22	2.5	23	94	2	96	55	0	1	42	1.10
18091971--18091996	12	2.2	12	100	0	52	50	15	7	26	1.71
18097592--18097651	31	1.9	31	83	6	77	26	18	11	43	1.84
18105829--18105908	33	2.5	31	76	15	83	32	15	6	46	1.70
18107775--18107904	6	20.7	6	85	6	91	0	59	0	40	0.98
18107755--18107921	78	2.2	76	91	5	266	0	55	0	44	0.99
18107736--18107919	7	28.7	6	88	7	129	0	54	0	45	0.99
18115185--18115216	3	10.7	3	100	0	64	65	0	0	34	0.93
18116797--18116871	38	2.0	38	94	0	132	25	13	21	40	1.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135