genome.fa.s10.2.7.7.80.10.50.1000.24.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  24  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10000339--10000396	21	2.8	21	100	0	116	22	0	29	48	1.51
10000783--10000829	18	2.8	16	81	12	67	68	0	23	8	1.17
10007594--10007619	13	2.0	13	100	0	52	30	15	7	46	1.74
10009842--10009870	14	2.1	14	100	0	58	27	13	6	51	1.66
10014037--10014105	21	3.3	21	87	2	95	11	24	8	55	1.64
10016471--10016564	18	5.4	18	92	3	131	28	9	25	36	1.87
10024807--10024834	14	2.0	14	100	0	56	14	14	0	71	1.15
10024831--10024881	6	9.2	6	83	12	56	31	3	13	50	1.60
10024831--10024881	11	4.6	12	72	18	56	31	3	13	50	1.60
10024823--10024878	27	2.1	27	100	0	112	28	7	10	53	1.62
10033057--10033118	32	1.9	32	96	0	115	38	22	9	29	1.86
10040403--10040430	13	2.2	13	100	0	56	28	7	14	50	1.69
10046641--10046670	10	3.1	10	95	4	53	56	0	0	43	0.99
10060253--10060308	27	2.1	27	100	0	112	53	10	7	28	1.62
10060250--10060300	6	9.2	6	83	12	56	50	13	3	31	1.60
10060297--10060324	14	2.0	14	100	0	56	71	0	14	14	1.15
10068567--10068660	18	5.4	18	92	3	131	36	25	9	28	1.87
10068567--10068647	9	9.0	9	70	0	54	34	27	9	28	1.89
10071026--10071114	21	4.1	21	84	5	90	53	10	23	12	1.68
10071026--10071094	21	3.3	21	87	2	95	55	8	24	11	1.64
10075261--10075289	14	2.1	14	100	0	58	51	6	13	27	1.66
10077513--10077538	13	2.0	13	100	0	52	46	7	15	30	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10089027--10089051	12	2.1	12	100	0	50	44	0	24	32	1.54
10089830--10089854	12	2.1	12	100	0	50	48	8	0	44	1.32
10092460--10092498	21	1.9	20	94	5	69	33	10	25	30	1.89
10092615--10092649	15	2.3	15	95	0	61	22	0	0	77	0.78
10092656--10092754	11	8.6	13	69	25	55	58	0	1	40	1.05
10092654--10092756	23	4.6	22	75	13	77	59	0	0	39	1.04
10092676--10092739	9	6.8	9	79	13	51	59	0	1	39	1.07
10092672--10092752	21	3.8	21	82	11	85	60	0	1	38	1.05
10092654--10092756	30	3.4	31	75	17	101	59	0	0	39	1.04
10093203--10093227	13	1.9	13	100	0	50	56	8	8	28	1.57
10094510--10094554	23	2.0	23	100	0	90	48	6	13	31	1.68
10101138--10101164	12	2.2	12	100	0	54	29	7	14	48	1.71
10101662--10101696	17	2.1	17	94	0	61	48	11	2	37	1.54
10106226--10106267	21	2.0	21	95	0	75	69	0	0	30	0.89
10106225--10106309	12	7.4	12	69	26	51	62	1	2	34	1.16
10106271--10106316	16	3.1	15	84	9	58	56	0	4	39	1.19
10106271--10106310	16	2.5	16	87	0	62	55	0	5	40	1.22
10106329--10106372	21	2.1	21	100	0	88	52	9	0	38	1.33
10106329--10106364	12	3.2	12	77	22	51	52	11	0	36	1.37
10109776--10109806	15	2.1	15	100	0	62	48	19	19	12	1.81
10114779--10114814	18	2.0	18	100	0	72	0	55	0	44	0.99
10114803--10114838	11	3.3	11	88	0	54	0	52	0	47	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10114832--10114874	18	2.4	18	88	0	59	9	13	6	69	1.35
10115361--10115417	27	2.1	28	90	3	89	42	7	7	43	1.58
10115515--10115546	17	2.0	17	88	11	50	59	3	6	31	1.38
10115682--10115720	17	2.3	17	86	8	53	69	5	2	23	1.21
10115779--10115821	22	1.9	23	86	13	63	65	4	4	25	1.32
10116482--10116612	29	4.5	28	71	24	83	31	3	1	64	1.18
10116492--10116572	18	4.4	18	75	13	76	33	2	1	62	1.16
10119196--10119246	16	3.2	16	97	0	93	52	13	11	21	1.72
10120867--10120896	15	2.0	15	100	0	60	66	0	13	20	1.24
10122427--10122454	11	2.5	11	100	0	56	53	0	0	46	1.00
10122843--10123509	68	9.9	68	85	6	853	29	21	14	34	1.93
10122870--10123508	135	4.7	136	88	5	886	29	21	14	33	1.94
10135246--10135389	29	4.9	28	73	13	94	36	3	24	36	1.73
10135255--10135515	30	8.8	29	81	6	213	38	3	21	36	1.69
10135261--10135514	90	2.9	87	80	8	262	38	3	21	37	1.70
10135663--10136098	30	14.9	30	79	8	103	38	3	21	36	1.70
10135663--10136091	60	7.4	58	75	11	208	37	3	21	37	1.70
10135707--10136106	30	13.7	30	81	7	380	37	3	21	38	1.69
10135111--10135907	417	1.9	417	99	0	1576	40	6	21	32	1.78
10135884--10135930	21	2.2	22	84	3	60	31	2	25	40	1.68
10135855--10135957	51	2.0	51	81	3	118	34	2	23	38	1.70
10135705--10136106	200	2.0	200	96	0	741	37	2	21	38	1.69
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10137676--10137714	20	2.0	20	85	10	53	15	12	48	23	1.79
10137925--10137952	11	2.5	11	100	0	56	53	0	0	46	1.00
10138323--10138357	18	1.9	18	88	0	52	34	2	2	60	1.26
10138745--10138769	2	12.5	2	100	0	50	48	0	0	52	1.00
10139533--10139577	21	2.1	22	91	4	74	57	11	11	20	1.63
10145035--10146497	731	2.0	731	98	0	2854	35	12	14	37	1.84
10148352--10148430	37	2.1	39	92	4	135	46	0	1	51	1.08
10148362--10148429	21	3.5	20	67	20	63	45	0	1	52	1.09
10149406--10149482	27	2.7	29	88	6	113	53	2	1	42	1.23
10150280--10150335	19	3.1	18	76	19	62	26	0	3	69	1.04
10158473--10158547	24	3.1	24	84	0	105	57	8	9	25	1.57
10161076--10161133	18	3.2	18	72	0	62	48	1	1	48	1.22
10161051--10161152	28	3.5	28	75	12	91	55	2	0	40	1.21
10161583--10161625	2	21.5	2	100	0	86	48	0	0	51	1.00
10165594--10165652	24	2.5	24	85	0	82	47	11	15	25	1.79
10168627--10168667	17	2.5	17	88	4	57	56	0	7	36	1.27
10178491--10178550	21	3.1	18	75	15	57	61	0	3	35	1.12
10180472--10180514	21	2.0	21	82	8	52	48	2	4	44	1.36
10181274--10181312	21	1.9	20	84	5	51	58	5	0	35	1.20
10181685--10181743	10	5.9	10	71	13	50	32	5	0	62	1.17
10183322--10183392	21	3.3	21	70	16	56	42	1	2	53	1.24
10185907--10185992	42	2.0	42	91	4	138	36	0	15	48	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10191085--10191143	29	2.0	29	100	0	118	45	6	20	27	1.76
10191147--10191226	41	2.0	41	100	0	160	36	20	23	20	1.95
10199798--10199836	2	19.5	2	100	0	78	48	0	0	51	1.00
10205949--10206008	19	3.1	19	83	9	84	5	6	15	73	1.22
10205949--10206008	21	3.0	20	80	7	77	5	6	15	73	1.22
10205999--10206070	12	6.1	12	79	9	76	4	2	22	70	1.17
10205950--10206016	20	3.3	20	80	10	75	4	5	16	73	1.20
10205978--10206127	21	6.8	22	70	13	94	8	4	18	69	1.30
10205978--10206073	12	8.7	10	69	16	50	5	3	19	71	1.18
10206076--10206140	20	3.0	20	73	16	58	12	6	16	64	1.46
10206001--10206123	12	10.7	12	72	11	69	7	4	19	69	1.29
10206048--10206140	44	2.1	44	83	0	114	11	5	16	66	1.41
10207769--10207843	12	6.2	12	74	10	55	28	14	14	42	1.85
10207780--10207867	23	3.8	23	86	4	115	28	12	19	39	1.88
10220596--10220646	26	1.9	26	84	4	66	33	7	1	56	1.39
10224387--10224631	122	2.0	122	98	0	472	25	9	22	42	1.84
10225853--10225920	10	6.6	10	75	11	57	29	4	1	64	1.21
10226008--10226052	22	2.1	22	83	4	56	28	6	2	62	1.33
10234763--10234804	14	3.1	14	86	3	50	54	0	4	40	1.21
10235375--10235399	13	1.9	13	100	0	50	64	0	0	36	0.94
10243496--10243553	21	2.6	23	78	15	68	36	1	0	62	1.06
10243955--10244041	30	3.3	27	77	14	92	28	4	4	62	1.35
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
10259098--10259165	31	2.1	33	84	10	88	54	10	11	23	1.67
10259746--10259826	29	2.7	30	82	5	101	44	13	9	32	1.77
10259873--10259898	3	8.7	3	100	0	52	65	0	0	34	0.93
10263112--10263179	30	2.2	32	86	5	95	41	1	5	51	1.35
10274555--10274614	31	1.9	32	93	3	104	55	10	1	33	1.43
10280704--10280873	33	5.0	33	82	8	187	38	18	24	18	1.93
10292818--10292987	28	6.1	28	81	3	182	25	12	13	47	1.79
10292818--10292987	83	2.0	84	85	3	227	25	12	13	47	1.79
10292820--10292986	55	3.0	55	80	6	185	26	13	12	47	1.78
10298711--10298775	25	2.6	24	80	7	67	35	10	7	46	1.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135