genome.fa.s10.2.7.7.80.10.50.1000.110.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  110  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37512442--37512481	15	2.6	16	84	15	57	32	2	0	65	1.06
37537790--37537820	12	2.6	12	89	0	53	80	0	9	9	0.90
37551590--37551651	18	3.3	18	72	12	61	46	1	27	24	1.62
37551569--37551676	39	2.8	38	87	6	148	43	1	26	27	1.65
37551571--37551725	36	4.3	36	80	8	156	43	1	27	28	1.63
37551585--37551687	18	5.5	18	66	22	52	43	0	24	31	1.61
37553526--37553567	16	2.6	16	78	17	50	52	0	4	42	1.22
37558173--37558240	24	2.6	27	76	19	74	26	14	14	44	1.84
37560226--37560271	21	2.2	21	84	7	58	28	8	32	30	1.87
37572186--37572265	39	2.1	39	100	0	160	45	12	10	32	1.75
37573292--37573325	5	6.4	5	87	12	50	2	0	35	61	1.11
37574304--37574349	3	15.3	3	100	0	92	65	0	0	34	0.93
37593943--37594051	58	1.9	58	86	1	157	29	9	10	51	1.66
37594433--37594500	15	5.1	15	71	23	62	64	2	0	32	1.08
37597151--37597184	9	3.8	9	88	11	52	79	0	2	17	0.86
37599582--37599628	22	2.0	23	84	8	60	74	2	19	4	1.09
37601295--37601633	87	3.9	88	80	8	372	33	6	25	34	1.82
37601266--37601662	87	4.5	87	78	9	332	34	5	25	34	1.80
37601295--37601676	146	2.6	144	80	10	370	34	5	25	34	1.80
37601295--37601676	29	13.1	29	79	9	277	34	5	25	34	1.80
37601429--37601760	29	11.4	28	76	14	143	34	4	25	35	1.77
37601349--37601760	117	3.5	116	77	12	364	34	5	25	34	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37603355--37603443	11	7.9	11	71	14	56	58	4	2	34	1.31
37603349--37603450	17	5.9	17	81	1	123	56	3	1	37	1.29
37603358--37603450	34	2.7	34	91	1	150	58	4	2	35	1.30
37616585--37616615	3	10.3	3	100	0	62	67	0	32	0	0.91
37617904--37617951	24	2.0	24	88	8	71	60	6	0	33	1.22
37617870--37617954	12	7.3	12	71	18	56	60	4	0	35	1.18
37621106--37621162	26	2.1	27	83	3	71	22	35	22	19	1.96
37623913--37623948	6	6.0	6	93	0	54	11	0	5	83	0.80
37624689--37624874	97	1.9	95	83	6	241	32	11	25	30	1.91
37628237--37628294	27	2.1	27	84	6	73	31	1	6	60	1.33
37628255--37628363	36	3.1	35	79	10	116	27	1	6	64	1.28
37628302--37628372	36	2.0	36	86	5	99	28	4	5	61	1.37
37631055--37631093	3	13.0	3	100	0	78	66	0	0	33	0.92
37632274--37632325	25	2.1	25	85	0	68	51	15	9	23	1.72
37643004--37643031	10	2.8	10	100	0	56	10	25	10	53	1.67
37647437--37647475	17	2.3	17	86	0	51	15	15	23	46	1.83
37649153--37649192	15	2.6	16	85	14	50	27	17	12	42	1.85
37649207--37649265	3	19.7	3	100	0	118	67	0	0	32	0.91
37654238--37654636	49	8.1	49	76	2	160	40	18	23	17	1.91
37654236--37654599	98	3.7	96	75	7	295	40	17	23	18	1.91
37654280--37654599	147	2.2	147	80	2	347	40	17	23	18	1.91
37654545--37654672	49	2.6	49	82	6	134	39	21	21	17	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37655205--37655247	18	2.3	19	80	8	52	58	25	6	9	1.54
37655211--37655247	18	2.1	18	89	0	56	54	27	8	10	1.63
37655345--37655396	25	2.1	25	88	0	77	50	13	11	25	1.75
37656468--37656510	3	14.3	3	100	0	86	32	0	0	67	0.91
37658611--37658650	19	2.1	19	90	0	62	20	30	15	35	1.93
37662741--37662787	16	2.8	17	83	9	60	57	0	14	27	1.38
37663530--37663594	18	3.6	18	85	0	85	26	18	23	32	1.97
37669379--37669437	17	3.5	17	80	0	64	49	11	16	22	1.78
37674868--37674929	20	3.0	21	76	7	63	37	19	6	37	1.78
37675317--37675375	23	2.6	23	88	0	82	28	6	22	42	1.79
37677524--37677581	27	2.2	26	84	3	71	24	20	12	43	1.86
37679140--37679210	23	3.1	23	87	0	106	25	8	26	39	1.84
37692035--37692080	20	2.2	20	84	3	56	71	4	19	4	1.20
37692468--37692508	22	2.0	20	85	9	55	58	0	14	26	1.37
37692503--37692538	18	2.1	18	89	5	56	41	0	25	33	1.55
37699729--37699764	18	2.0	18	88	0	54	61	0	19	19	1.35
37702220--37702261	3	14.0	3	100	0	84	66	0	0	33	0.92
37705045--37705069	12	2.1	12	100	0	50	76	0	0	24	0.80
37713551--37713591	2	20.5	2	100	0	82	48	0	0	51	1.00
37714632--37714694	4	15.8	4	96	0	117	49	25	1	23	1.59
37715894--37715932	20	2.0	20	84	0	51	61	2	5	30	1.31
37718319--37718468	80	1.9	80	87	0	219	29	23	20	26	1.99
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37721211--37721583	30	12.7	29	80	3	322	36	26	2	34	1.72
37721211--37721606	87	4.5	87	79	6	284	36	26	3	34	1.73
37727333--37727391	6	10.2	6	83	8	70	83	0	16	0	0.66
37728794--37729802	92	11.0	92	95	1	1697	32	15	19	32	1.93
37729405--37729656	51	5.4	51	66	23	192	32	14	19	34	1.92
37730397--37730450	28	1.9	28	84	0	72	37	1	5	55	1.34
37730385--37730431	22	2.1	23	84	4	60	34	0	8	57	1.29
37730413--37730488	6	12.8	6	74	18	70	40	3	0	55	1.18
37730413--37730487	17	4.6	17	88	9	104	40	4	0	56	1.18
37730429--37730487	31	1.9	31	93	6	102	40	5	0	54	1.23
37730391--37730488	11	8.5	11	72	11	63	39	3	3	54	1.32
37732352--37732641	29	9.9	29	77	5	228	36	25	3	34	1.73
37732352--37732598	59	4.2	57	82	5	246	38	24	2	34	1.70
37733692--37734063	143	2.6	143	84	4	471	41	3	9	45	1.52
37733692--37734103	146	2.8	145	84	5	521	41	2	10	45	1.53
37733701--37734142	143	3.0	142	79	10	464	41	3	10	44	1.55
37743049--37743607	42	13.3	42	88	0	760	21	19	23	35	1.96
37753595--37753689	24	3.9	25	74	9	72	35	26	16	21	1.94
37753595--37753690	48	2.0	49	87	2	140	35	26	17	20	1.95
37759194--37759369	92	1.9	92	88	0	262	30	28	10	30	1.90
37766687--37766732	12	3.8	12	78	18	51	0	30	0	69	0.89
37766695--37766744	15	3.3	15	86	5	66	0	28	0	72	0.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37766692--37766738	24	2.0	24	91	8	78	0	27	0	72	0.85
37777904--37777959	21	2.7	21	88	0	67	35	21	14	28	1.92
37777912--37777976	21	3.1	21	84	0	67	33	24	12	29	1.92
37778016--37778233	113	1.9	113	91	1	357	33	27	10	28	1.90
37781642--37781687	24	2.0	24	82	4	58	36	21	2	39	1.66
37781870--37781915	21	2.1	22	84	4	58	23	23	2	50	1.61
37782950--37782991	21	1.9	23	85	9	61	40	2	33	23	1.68
37783040--37783065	10	2.6	10	100	0	52	69	0	11	19	1.18
37785303--37785830	264	2.0	264	100	0	1056	28	18	19	34	1.95
37792563--37792596	17	1.9	18	88	5	52	55	2	0	41	1.15
37807812--37807860	25	2.0	25	87	0	71	46	4	2	46	1.33
37819578--37819623	18	2.3	21	79	20	55	58	0	0	41	0.98
37819564--37819640	27	2.8	27	78	9	75	66	1	0	32	1.00
37819591--37819633	19	2.2	20	84	8	54	62	2	0	34	1.08
37819942--37819987	23	2.1	22	84	8	58	21	2	4	71	1.14
37826429--37826522	17	5.5	17	69	18	70	28	32	21	17	1.95
37826429--37826521	34	2.7	34	91	0	150	29	32	21	17	1.96
37828250--37828322	31	2.4	31	83	4	85	38	8	10	42	1.70
37830181--37830240	23	2.6	22	76	12	59	60	1	0	38	1.07
37842644--37842686	19	2.2	19	84	12	52	55	25	4	13	1.58
37845618--37845774	41	3.8	41	87	5	217	35	12	25	26	1.92
37845618--37845771	84	1.9	82	87	5	220	35	12	25	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
37851954--37852175	41	5.3	41	79	7	205	33	10	27	28	1.90
37851978--37852175	42	4.8	41	77	7	150	34	10	26	28	1.89
37858986--37859200	41	5.1	41	76	9	193	34	11	26	26	1.91
37866787--37866838	14	3.8	13	80	12	59	63	3	11	21	1.43
37875429--37875492	31	2.1	30	85	8	85	23	10	7	57	1.58
37876583--37876619	19	1.9	19	89	10	58	32	2	0	64	1.07
37890457--37890535	29	2.8	28	79	11	72	40	0	2	56	1.12
37890468--37890512	18	2.4	18	82	10	56	37	0	0	62	0.96
37890467--37890535	29	2.4	28	83	4	84	39	0	2	57	1.13
37890485--37890548	19	3.4	18	77	8	65	37	0	4	57	1.19

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135