genome.fa.s10.2.7.7.80.10.50.1000.115.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  115  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38756196--38756316	60	2.0	60	96	0	224	28	19	18	33	1.95
38757379--38757440	18	3.5	17	75	16	63	25	3	6	64	1.33
38757376--38757455	36	2.3	35	93	2	133	27	2	5	65	1.27
38757397--38757499	18	5.9	17	68	17	68	31	3	2	62	1.28
38763409--38763522	51	2.2	52	84	4	142	29	22	14	32	1.94
38768083--38768308	51	4.4	50	87	4	251	30	14	25	30	1.95
38768083--38768308	102	2.2	101	84	6	285	30	14	25	30	1.95
38771561--38771644	42	2.0	42	97	0	159	45	10	14	29	1.78
38772585--38772649	33	2.0	33	84	3	87	32	9	6	52	1.58
38773368--38773394	14	1.9	14	100	0	54	25	0	0	74	0.83
38775818--38775914	39	2.5	39	84	1	113	27	14	16	41	1.87
38775846--38775921	39	1.9	39	91	0	125	27	15	15	40	1.88
38790840--38790873	16	2.1	16	89	10	52	32	14	0	52	1.42
38792049--38792100	17	2.9	18	80	11	54	63	1	1	32	1.16
38792040--38792104	28	2.3	27	82	12	69	64	1	1	32	1.12
38794301--38794339	2	19.5	2	100	0	78	51	0	48	0	1.00
38800159--38800220	30	2.1	30	90	0	97	29	4	9	56	1.52
38806562--38806621	9	7.2	9	70	30	53	50	0	0	50	1.00
38806554--38806623	20	3.5	20	73	25	67	48	0	1	50	1.09
38806562--38806645	40	2.1	40	91	6	136	51	0	0	48	1.00
38807784--38807819	9	4.2	9	89	10	58	44	0	0	55	0.99
38807764--38807841	38	2.0	39	92	2	131	50	0	0	50	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38809434--38809459	13	2.0	13	100	0	52	84	7	7	0	0.77
38809332--38810284	477	2.0	476	98	0	1843	37	14	13	34	1.85
38813875--38814277	200	2.0	200	99	0	797	30	17	22	29	1.97
38822537--38822590	21	2.6	21	79	5	65	29	25	14	29	1.95
38824773--38824833	29	2.1	29	87	0	86	18	24	16	40	1.90
38825034--38825081	19	2.5	19	86	10	62	0	29	2	68	1.01
38825208--38825324	38	3.1	37	82	1	144	32	17	11	38	1.85
38832738--38833071	115	2.9	114	86	2	436	48	17	9	24	1.76
38836420--38836490	29	2.5	28	74	2	70	21	16	28	33	1.95
38838339--38838387	24	2.1	24	84	3	64	24	12	10	53	1.69
38844323--38844382	25	2.4	25	78	18	63	11	13	6	68	1.39
38845469--38845509	20	2.0	20	100	0	82	14	29	9	46	1.77
38846791--38846863	32	2.2	33	83	7	96	61	6	4	27	1.40
38851680--38851730	17	3.1	17	72	11	52	64	9	3	21	1.40
38852497--38852550	6	8.5	6	77	18	56	77	0	22	0	0.76
38852497--38852550	15	3.6	15	83	14	67	77	0	22	0	0.76
38852508--38852550	21	2.0	21	95	0	77	79	0	20	0	0.74
38858209--38858300	48	1.9	48	88	0	139	44	7	13	34	1.72
38861078--38861183	37	2.8	37	83	5	133	31	20	20	27	1.98
38861037--38861174	18	7.6	18	73	4	107	28	21	19	31	1.97
38861037--38861184	19	8.1	18	72	8	84	29	20	20	30	1.97
38861895--38861941	21	2.2	21	88	0	67	34	14	23	27	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38861903--38861948	21	2.2	21	96	0	83	36	10	26	26	1.89
38861893--38861966	21	3.5	20	78	10	60	35	14	25	24	1.94
38864071--38864101	16	1.9	16	93	0	53	22	16	0	61	1.34
38865437--38865490	26	2.1	26	89	0	81	25	20	24	29	1.99
38869416--38869473	2	29.0	2	100	0	116	50	0	0	50	1.00
38870661--38870695	2	17.5	2	93	0	61	0	2	48	48	1.16
38874059--38874096	18	2.1	18	95	0	67	15	18	28	36	1.92
38874063--38874123	18	3.3	18	81	4	68	27	18	26	27	1.98
38878417--38878462	20	2.2	21	92	3	76	4	8	19	67	1.35
38878471--38878579	12	9.7	12	74	12	63	7	5	19	67	1.34
38878542--38878594	20	2.5	21	84	9	63	7	0	22	69	1.13
38879666--38879694	2	14.5	2	100	0	58	48	0	0	51	1.00
38881264--38881296	13	2.5	13	90	0	57	48	6	6	39	1.53
38897956--38897991	17	2.1	17	89	5	54	11	0	5	83	0.80
38911385--38911525	41	3.4	41	92	1	228	26	23	9	40	1.86
38911347--38911525	82	2.2	82	87	4	254	26	23	9	40	1.85
38918444--38918518	22	3.4	22	82	10	82	17	24	28	30	1.97
38918506--38918592	7	12.4	7	80	0	93	20	21	24	33	1.97
38918633--38918702	34	2.1	34	91	0	113	17	28	14	40	1.88
38920894--38921356	30	15.4	30	78	4	402	37	3	20	38	1.70
38920944--38921357	60	6.9	60	81	8	457	36	3	20	39	1.69
38920894--38921370	90	5.3	90	80	6	491	36	3	21	38	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38922365--38922402	13	2.9	13	92	0	58	42	0	2	55	1.14
38922772--38922819	25	1.9	25	83	8	62	27	6	20	45	1.75
38922966--38923004	20	2.0	20	85	10	53	15	12	48	23	1.79
38923173--38923243	11	5.9	11	71	18	52	54	1	1	42	1.17
38923634--38924310	68	9.9	66	90	2	931	29	20	16	33	1.94
38923675--38924265	31	17.5	31	67	15	140	29	21	15	33	1.94
38923634--38924276	136	4.7	136	94	0	1045	29	20	16	32	1.95
38923634--38924310	204	3.3	203	91	1	1066	29	20	16	33	1.94
38936061--38936432	30	12.4	30	77	8	280	36	3	21	38	1.70
38936061--38936415	90	4.0	89	79	9	332	36	3	21	38	1.71
38936100--38936433	30	11.1	30	80	4	318	35	3	20	40	1.70
38937438--38937475	13	2.9	13	92	0	58	42	0	2	55	1.14
38950456--38950480	7	3.6	7	100	0	50	64	0	0	36	0.94
38951220--38951292	31	2.4	29	80	11	76	43	2	17	35	1.64
38951519--38951573	26	2.2	26	83	9	69	38	3	3	54	1.36
38953096--38953135	21	1.9	21	84	0	53	52	7	7	32	1.58
38953345--38953390	24	1.9	24	81	0	56	43	21	0	34	1.53
38954143--38954242	9	10.4	9	78	12	101	15	52	17	16	1.76
38954153--38954194	21	2.0	21	90	0	66	16	50	16	16	1.79
38954143--38954242	48	2.1	48	96	0	182	15	52	17	16	1.76
38954183--38954242	21	3.0	21	88	7	81	13	51	18	16	1.76
38961293--38961372	27	3.0	27	72	17	76	18	12	35	33	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38961307--38961385	27	2.9	27	73	14	81	17	13	36	31	1.89
38964365--38964431	33	2.0	33	100	0	134	38	25	8	26	1.85
38964673--38964719	22	2.1	22	84	7	60	8	12	6	72	1.27
38966721--38966797	27	2.9	27	80	0	82	38	20	12	27	1.89
38970188--38970301	41	2.7	41	89	4	156	35	22	8	32	1.85
38970580--38970636	3	19.3	3	89	10	91	0	33	0	66	0.92
38970669--38970742	32	2.3	32	84	9	89	39	22	16	21	1.92
38971458--38971524	34	1.9	35	82	8	84	55	2	1	40	1.24
38973342--38973384	17	2.5	17	80	0	50	62	0	2	34	1.08
38982087--38982111	3	8.3	3	100	0	50	36	0	0	64	0.94
38984166--38984192	8	3.4	8	100	0	54	44	0	0	55	0.99
38987750--38987827	41	1.9	41	82	10	97	34	20	15	29	1.93
38992738--38992772	17	2.1	17	100	0	70	45	5	17	31	1.71
38992697--38992813	58	2.0	58	96	0	216	40	9	13	36	1.77
38993218--38993252	11	3.0	12	83	8	54	71	0	0	28	0.86
38995871--38996115	125	2.0	125	96	0	454	37	16	23	22	1.94
38999168--38999236	29	2.3	31	87	5	97	27	13	18	40	1.88
38999086--38999349	91	2.9	90	81	3	298	31	13	14	40	1.85
38999539--38999677	62	2.2	62	81	7	158	43	10	12	33	1.77
38999562--38999690	62	2.1	62	80	2	143	44	12	13	30	1.80
39000261--39000349	34	2.6	34	90	0	142	42	34	3	19	1.68
39003620--39003652	16	2.0	17	88	5	50	51	0	0	48	1.00
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
39006306--39006513	58	3.5	58	78	8	213	42	19	2	35	1.66
39006297--39006513	30	7.3	29	80	5	220	43	18	2	34	1.65
39006618--39006669	21	2.5	22	76	17	58	21	1	7	69	1.24
39009168--39009212	18	2.5	18	82	7	56	55	0	0	44	0.99
39019998--39020045	25	1.9	25	91	0	78	39	4	22	33	1.74
39021696--39021841	50	2.9	50	79	2	159	35	18	24	21	1.95
39021877--39022562	40	17.3	40	76	5	513	31	24	17	26	1.97
39021877--39022322	119	3.8	118	82	4	479	30	24	17	26	1.97
39021877--39022560	118	5.8	119	80	6	494	31	24	17	26	1.97
39021899--39022561	277	2.4	276	87	2	938	31	24	17	26	1.97

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135