genome.fa.s10.2.7.7.80.10.50.1000.124.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  124  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40909821--40909846	7	3.7	7	100	0	52	0	26	0	73	0.84
40912544--40912619	21	3.5	22	73	16	59	42	26	7	23	1.81
40918091--40918369	46	6.1	46	86	3	368	24	17	24	33	1.96
40918098--40918459	88	4.2	88	82	5	402	24	18	23	33	1.97
40918091--40918369	134	2.0	137	87	3	402	24	17	24	33	1.96
40918262--40918498	38	5.8	38	75	10	150	25	17	24	32	1.97
40918124--40918502	88	4.5	82	81	9	324	24	17	24	32	1.97
40918559--40919170	98	6.4	96	78	5	560	22	26	15	36	1.93
40918732--40918986	49	5.3	49	73	10	193	23	27	13	35	1.93
40918749--40919120	47	8.0	47	68	8	184	21	27	15	34	1.94
40918559--40919016	193	2.4	194	86	1	614	22	25	14	36	1.93
40919864--40919949	6	14.0	6	71	22	63	1	20	0	77	0.83
40919867--40919950	17	4.6	17	72	24	64	1	20	0	78	0.82
40919865--40919950	27	3.2	25	82	12	100	1	19	0	79	0.80
40919865--40919950	26	3.2	28	85	11	117	1	19	0	79	0.80
40924784--40924821	19	2.0	19	100	0	76	31	0	10	57	1.32
40926307--40926569	59	4.5	59	77	10	243	39	3	20	36	1.68
40926321--40926588	29	9.1	30	80	8	266	38	2	20	37	1.68
40928571--40928922	58	6.1	57	89	3	492	32	2	30	33	1.72
40928570--40928922	116	3.0	117	89	2	550	32	2	30	33	1.72
40929005--40929319	162	1.9	162	92	0	522	43	13	17	25	1.86
40930869--40930924	17	3.4	17	85	11	80	55	0	1	42	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40930870--40930924	11	5.0	11	78	6	58	56	0	1	41	1.10
40930869--40930924	6	10.0	6	78	18	59	55	0	1	42	1.10
40931274--40931400	38	3.3	38	68	16	109	29	19	15	34	1.93
40931243--40931979	76	9.9	76	87	5	1004	31	19	15	33	1.93
40931496--40931979	38	12.9	38	62	20	155	31	19	15	33	1.93
40932838--40932863	9	2.9	9	100	0	52	11	0	0	88	0.52
40944104--40944323	30	7.6	29	75	16	197	33	3	30	33	1.74
40944099--40944334	59	4.1	59	93	2	406	33	3	31	31	1.74
40944098--40944330	116	2.0	116	94	3	407	33	3	30	32	1.76
40944393--40944735	163	2.1	162	91	0	560	43	13	17	25	1.86
40945628--40945841	62	3.6	60	76	16	212	27	22	16	32	1.96
40945821--40945878	30	1.9	30	100	0	116	20	34	18	25	1.96
40947421--40947512	30	3.1	30	80	9	89	25	5	6	63	1.40
40948405--40948873	62	7.7	61	87	4	639	33	15	20	30	1.94
40948405--40948873	123	3.8	122	87	5	653	33	15	20	30	1.94
40948901--40949015	60	1.9	58	84	3	149	29	16	19	34	1.94
40949801--40949882	41	2.0	41	95	0	146	20	18	15	45	1.86
40952988--40953065	17	4.6	17	86	0	111	42	0	3	53	1.19
40952988--40953071	6	14.7	6	70	18	63	42	0	3	53	1.18
40953016--40953078	17	3.0	21	76	23	71	44	0	3	52	1.17
40953082--40953107	13	2.0	13	100	0	52	46	23	7	23	1.78
40954237--40954427	29	6.5	30	77	10	164	37	18	1	42	1.58
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40954256--40954444	88	2.1	88	81	9	217	35	22	1	40	1.64
40954256--40954529	29	9.4	29	75	12	122	36	24	2	36	1.68
40954328--40954529	29	7.0	27	77	10	138	37	27	1	33	1.68
40954403--40954552	28	5.3	28	76	10	117	36	28	3	32	1.74
40954421--40954538	57	2.1	57	85	7	159	39	29	4	26	1.75
40956615--40956655	15	2.7	15	73	26	50	53	2	0	43	1.13
40956615--40956684	30	2.3	31	85	7	90	50	4	0	45	1.21
40956643--40956701	26	2.5	22	79	15	73	49	3	0	47	1.18
40956615--40956695	31	2.7	29	86	5	99	49	3	0	46	1.19
40956643--40956700	24	2.4	26	83	11	79	50	3	0	46	1.18
40970602--40970654	22	2.4	22	84	6	63	67	1	1	28	1.11
40970627--40970673	21	2.1	23	84	7	62	72	4	2	21	1.12
40970766--40970829	6	10.7	6	98	0	110	12	17	35	34	1.87
40981559--40981710	72	2.1	72	96	2	281	28	25	6	38	1.81
40984297--40984358	24	2.7	23	75	22	58	45	4	0	50	1.23
40989135--40989225	6	15.7	6	70	11	64	54	4	1	39	1.27
40989136--40989241	35	3.0	34	80	5	122	53	5	0	39	1.31
40989135--40989245	17	6.3	17	80	6	123	54	5	0	39	1.30
40989575--40989955	195	1.9	200	85	6	522	20	23	21	34	1.96
40989861--40990041	86	2.1	86	89	0	272	23	23	18	34	1.96
40990330--40990892	76	7.4	76	93	0	919	33	16	15	33	1.91
40992942--40993262	30	10.8	30	76	13	161	35	3	25	34	1.74
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40992854--40993112	59	4.4	56	75	13	188	38	4	27	30	1.76
40993023--40993347	30	10.9	30	86	3	336	35	3	23	37	1.72
40995133--40995193	17	3.7	16	80	6	68	54	4	0	40	1.22
40995183--40995216	17	2.0	17	88	0	50	52	11	0	35	1.38
40995353--40995898	91	6.0	91	94	0	896	29	19	19	31	1.96
40995911--40996173	38	7.3	39	65	20	133	30	20	13	34	1.92
40995826--40996263	76	6.0	72	83	9	532	31	20	14	34	1.93
40995826--40996257	145	3.0	145	93	2	699	30	20	14	34	1.93
41007994--41008194	59	3.4	58	73	6	199	36	3	28	30	1.76
41008167--41008311	60	2.4	59	86	5	186	36	2	23	37	1.69
41008167--41008312	30	4.9	31	80	5	151	36	2	23	37	1.69
41010116--41010161	16	2.8	16	86	3	65	50	2	0	47	1.13
41010150--41010183	17	2.0	17	88	0	50	58	5	0	35	1.22
41010632--41010686	29	1.9	28	88	3	83	1	12	5	80	0.97
41010632--41010696	29	2.2	29	83	5	78	3	12	6	78	1.05
41011508--41011546	14	2.9	14	85	11	55	5	2	12	79	1.00
41011509--41011546	12	2.9	13	92	7	60	5	2	13	78	1.02
41017722--41017812	6	15.7	6	70	11	64	54	4	1	39	1.27
41017723--41017828	35	3.0	34	80	5	122	53	5	0	39	1.31
41017722--41017832	17	6.3	17	80	6	123	54	5	0	39	1.30
41022888--41023073	97	1.9	96	82	5	232	38	13	15	32	1.87
41023435--41023531	29	3.3	29	75	12	99	29	1	28	40	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41023456--41023637	30	6.1	31	73	16	152	36	1	26	35	1.64
41023451--41023616	59	2.8	58	77	12	212	36	1	26	36	1.65
41024745--41024848	3	33.3	3	75	9	66	35	2	4	56	1.35
41025549--41025598	11	4.6	11	76	11	50	50	6	2	42	1.38
41025557--41025661	6	18.3	6	67	20	64	55	1	3	39	1.29
41025557--41025653	17	5.6	17	80	10	99	54	2	4	39	1.31
41025571--41025641	37	1.9	37	88	5	108	56	2	5	35	1.38
41031880--41031933	24	2.2	24	100	0	108	3	18	33	44	1.67
41032816--41032856	17	2.3	18	91	4	66	46	0	0	53	1.00
41032829--41032868	17	2.4	17	86	0	53	47	0	2	50	1.14
41033275--41033315	17	2.3	18	87	8	57	46	26	4	21	1.72
41033438--41033484	22	2.1	23	84	4	60	38	23	12	25	1.90
41033631--41033673	3	14.0	3	85	4	59	62	0	0	37	0.95
41033631--41033690	13	4.8	13	83	6	70	58	0	0	41	0.98
41034642--41035036	29	13.5	28	69	21	197	32	29	3	34	1.74
41034639--41035055	59	7.1	59	86	4	531	31	30	4	34	1.76
41035014--41035093	38	2.1	38	83	0	97	30	26	7	36	1.84
41035089--41035151	29	2.2	28	85	2	81	38	33	4	23	1.76
41044867--41045644	76	10.2	76	93	0	1295	34	15	17	32	1.92
41045912--41045952	17	2.3	18	91	4	66	46	0	0	53	1.00
41045925--41045964	17	2.4	17	86	0	53	47	0	2	50	1.14
41046752--41046797	3	14.7	3	82	8	56	60	0	0	39	0.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41047764--41047986	59	3.8	59	78	7	247	31	26	3	37	1.74
41047789--41047986	30	6.7	28	67	25	88	30	27	4	37	1.75
41049509--41049564	28	2.0	27	83	16	69	57	0	1	41	1.09
41050123--41050155	15	2.3	15	89	5	50	39	9	6	45	1.61
41050383--41050427	23	1.9	24	82	13	58	37	2	2	57	1.23
41050988--41051033	24	1.9	24	100	0	92	28	13	17	41	1.86
41050978--41051028	12	4.2	12	75	12	50	29	15	13	41	1.86
41052316--41052361	23	2.0	23	86	4	65	19	19	15	45	1.85
41054194--41054218	6	4.2	6	100	0	50	84	16	0	0	0.63
41055004--41055400	60	6.7	60	79	6	368	34	20	4	41	1.72

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135