genome.fa.s10.2.7.7.80.10.50.1000.71.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  71  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23470254--23470290	9	4.0	9	89	3	56	32	0	40	27	1.57
23472768--23472812	23	1.9	24	86	4	65	57	4	0	37	1.19
23478385--23478543	85	1.9	85	85	0	219	23	23	13	38	1.91
23478171--23478632	208	2.2	211	86	3	657	22	20	17	39	1.92
23490825--23490884	29	2.1	29	100	0	120	60	6	6	26	1.47
23496348--23496407	24	2.5	24	88	0	93	50	8	15	26	1.72
23498321--23498377	24	2.4	24	87	0	78	52	7	14	26	1.66
23498760--23498865	38	2.8	38	85	4	124	12	37	1	48	1.52
23499861--23499939	40	2.0	40	94	0	140	36	18	8	35	1.83
23505978--23506015	16	2.3	17	81	4	51	71	0	0	28	0.87
23506695--23507158	232	2.0	232	99	0	910	41	7	12	39	1.70
23533414--23533445	15	2.1	16	94	5	57	62	0	6	31	1.20
23534498--23534566	20	3.5	20	84	3	97	37	23	24	14	1.92
23534658--23534698	22	2.0	21	85	9	57	41	2	24	31	1.68
23540687--23540718	15	2.1	16	94	5	57	62	0	6	31	1.20
23541783--23541859	7	11.3	7	77	5	68	40	22	22	15	1.91
23541777--23541877	27	3.7	27	81	5	114	39	20	20	18	1.92
23541781--23541859	34	2.3	34	86	4	106	39	21	21	17	1.93
23541795--23541873	20	4.2	20	70	18	71	37	21	21	18	1.94
23546946--23547056	55	2.0	55	91	0	177	26	27	18	27	1.98
23552558--23552617	29	2.1	28	87	3	84	66	16	5	11	1.40
23553323--23553426	37	2.8	37	85	0	136	29	25	18	26	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23553487--23553536	26	1.9	26	91	0	82	26	20	24	30	1.98
23556589--23556631	21	2.0	22	86	4	61	32	23	2	41	1.67
23567965--23568011	22	2.2	22	81	11	53	31	12	0	55	1.38
23567755--23568113	121	3.0	120	90	3	551	39	9	7	43	1.66
23587665--23587713	17	2.9	17	79	14	57	14	22	10	53	1.71
23588669--23588707	21	1.9	21	89	5	62	25	17	15	41	1.89
23590292--23590336	18	2.5	18	85	7	56	26	48	13	11	1.75
23591076--23591116	19	2.2	19	100	0	82	19	17	9	53	1.70
23594854--23594886	16	2.0	17	88	5	50	45	3	3	48	1.33
23596657--23596943	30	9.7	29	78	9	196	35	27	3	33	1.73
23596654--23596943	60	4.9	59	78	8	256	35	27	3	33	1.73
23596657--23596943	88	3.2	89	79	10	259	35	27	3	33	1.73
23609327--23609740	77	5.4	77	84	2	508	22	29	21	26	1.99
23609404--23609607	39	5.3	39	66	14	134	20	30	22	26	1.98
23609327--23609727	155	2.6	155	85	3	524	22	30	20	26	1.98
23609325--23609695	116	3.2	114	69	14	299	22	29	22	26	1.99
23609520--23609727	39	5.4	39	68	10	102	24	31	18	25	1.97
23610167--23610257	6	16.0	6	71	19	70	42	1	3	52	1.24
23610168--23610235	17	4.1	16	85	9	91	41	1	2	54	1.24
23610167--23610256	34	2.9	28	72	25	83	42	1	3	53	1.24
23610167--23610257	23	4.3	22	70	20	68	42	1	3	52	1.24
23612068--23612306	30	8.1	30	82	10	264	35	27	1	34	1.67
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23612068--23612306	59	4.1	59	82	9	267	35	27	1	34	1.67
23620171--23620204	18	1.9	18	88	5	52	29	0	5	64	1.17
23636764--23636791	5	5.6	5	100	0	56	21	0	0	78	0.75
23639066--23639119	22	2.5	22	81	0	63	22	22	20	35	1.96
23643974--23644281	71	4.4	71	86	0	395	35	29	12	22	1.91
23643974--23644281	35	8.7	35	86	1	400	35	29	12	22	1.91
23646783--23646999	81	2.7	82	86	2	312	23	14	31	29	1.94
23646783--23647040	81	3.2	81	83	3	243	22	15	31	30	1.95
23647065--23647137	27	2.7	27	79	12	87	20	8	28	42	1.81
23657019--23657053	17	2.1	17	100	0	70	42	5	5	45	1.51
23660534--23660591	28	2.1	28	100	0	116	13	31	6	48	1.69
23661775--23661815	2	20.0	2	95	5	73	48	0	2	48	1.14
23669115--23669181	32	2.1	33	86	8	93	8	2	49	38	1.50
23670005--23670093	22	3.8	22	80	10	79	43	17	25	12	1.84
23670052--23670265	23	9.4	23	75	12	192	42	21	23	12	1.87
23670058--23670132	39	1.9	39	91	0	123	44	20	22	13	1.86
23670097--23670265	48	3.6	46	91	4	250	40	23	24	11	1.88
23670097--23670265	71	2.4	70	86	9	229	40	23	24	11	1.88
23676529--23676595	23	2.7	26	86	8	88	44	19	25	10	1.82
23676554--23676813	23	11.5	22	77	14	228	41	22	24	12	1.88
23676599--23676813	94	2.3	93	90	6	328	40	22	24	12	1.89
23676599--23676813	71	3.1	70	90	5	328	40	22	24	12	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23689121--23689209	36	2.5	36	90	0	142	28	25	19	26	1.99
23689121--23689240	36	3.3	36	83	1	96	30	24	18	26	1.98
23690901--23691009	55	2.0	55	88	0	164	25	18	28	27	1.98
23695203--23695318	59	2.0	59	94	0	205	22	11	19	46	1.81
23700659--23701112	155	3.0	151	85	7	582	44	8	3	43	1.51
23701001--23701045	21	2.2	20	88	4	63	48	6	0	44	1.29
23713606--23713659	22	2.5	22	87	6	74	20	24	22	33	1.97
23718909--23718933	13	1.9	13	100	0	50	40	0	4	56	1.18
23718929--23718993	6	11.0	6	78	15	73	44	1	1	52	1.19
23718922--23718993	35	2.1	35	86	5	101	44	1	1	52	1.18
23720758--23721058	29	10.3	29	75	8	245	37	25	1	36	1.65
23720730--23721058	59	5.6	59	81	2	378	37	24	1	36	1.66
23727933--23728368	49	8.7	49	73	7	286	38	22	25	13	1.91
23728132--23728393	101	2.6	101	84	2	355	40	20	24	14	1.89
23728183--23728357	50	3.5	51	68	11	135	37	21	26	14	1.92
23728388--23728633	92	2.7	92	94	0	413	33	18	17	30	1.94
23728717--23728864	39	3.8	39	69	10	122	25	26	20	27	1.99
23728749--23728963	78	2.8	78	87	4	292	26	30	16	26	1.97
23728758--23728963	39	5.3	39	67	20	126	26	30	16	26	1.97
23729130--23729223	32	2.7	36	80	16	124	32	19	22	25	1.97
23729176--23729839	206	3.2	207	95	1	1165	36	18	21	23	1.95
23729572--23730064	158	3.2	154	70	17	451	34	20	22	22	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23730408--23730534	17	7.4	17	85	8	150	41	0	3	54	1.22
23730408--23730534	6	22.0	6	74	16	108	41	0	3	54	1.22
23731667--23731727	24	2.7	21	79	16	68	57	4	16	21	1.58
23732480--23732880	29	13.7	29	74	6	308	34	24	2	38	1.70
23732480--23732857	59	6.4	60	83	6	443	34	24	2	38	1.69
23732892--23733003	58	1.9	60	81	3	138	29	25	7	38	1.82
23735142--23735204	26	2.5	26	89	5	94	36	34	0	28	1.58
23738755--23738821	30	2.2	30	82	7	82	26	34	11	26	1.91
23741887--23741941	19	2.9	18	78	10	65	34	7	0	58	1.26
23743527--23743721	59	3.3	58	70	6	149	38	13	16	31	1.88
23743488--23743721	118	2.0	115	85	5	319	36	14	17	30	1.91
23743513--23743755	118	2.1	116	80	4	274	36	16	15	32	1.89
23745462--23745500	10	3.9	10	79	0	51	30	5	41	23	1.76
23745463--23745506	20	2.2	20	87	0	61	31	4	40	22	1.74
23745739--23745767	13	2.2	13	100	0	58	34	0	0	65	0.93
23745736--23745810	24	3.5	22	79	13	59	30	0	1	68	0.98
23745754--23745796	22	2.0	22	90	9	70	30	0	2	67	1.03
23745760--23745809	10	4.9	10	79	13	50	26	0	2	72	0.96
23746023--23746140	56	2.1	56	84	3	157	34	8	1	55	1.41
23746063--23746122	18	3.5	17	78	14	61	36	3	1	58	1.25
23746020--23746132	5	20.6	5	78	12	73	33	7	1	56	1.39
23746058--23746240	17	11.3	16	69	20	96	28	7	2	60	1.38
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23746157--23746239	6	14.2	6	69	9	55	27	7	2	62	1.34
23746193--23746239	18	2.6	18	89	0	67	29	6	2	61	1.32
23746286--23746359	6	12.3	6	72	5	60	45	8	1	44	1.41
23746409--23746439	11	2.8	11	90	0	53	41	9	0	48	1.36
23746409--23746450	22	1.9	22	85	0	57	40	9	0	50	1.35
23748951--23749102	37	4.1	36	82	5	162	34	31	19	14	1.92
23752863--23752927	17	3.8	17	74	8	60	50	15	15	18	1.78
23764866--23764911	23	2.0	23	100	0	92	30	17	21	30	1.96
23769288--23769331	23	2.0	22	86	4	61	38	0	15	45	1.47
23777843--23777892	15	3.1	15	76	15	55	44	0	14	42	1.44

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135