genome.fa.s10.2.7.7.80.10.50.1000.36.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  36  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13917183--13917291	28	3.9	28	85	0	128	31	20	13	34	1.91
13917185--13917308	28	4.5	28	83	1	97	29	20	16	33	1.95
13919488--13919592	55	1.9	55	94	0	183	31	14	10	43	1.79
13923560--13923602	19	2.3	19	84	8	52	58	4	0	37	1.19
13931451--13931493	19	2.3	19	84	8	52	58	2	0	39	1.11
13933649--13933712	34	1.9	32	84	15	85	62	0	4	32	1.16
13938855--13938894	11	3.6	11	83	9	55	30	0	2	67	1.04
13945994--13946080	40	2.1	43	83	14	112	41	1	0	57	1.06
13949340--13949380	21	2.0	21	85	9	57	2	19	0	78	0.87
13949338--13949380	22	2.0	21	86	9	59	2	20	0	76	0.89
13950828--13950858	16	1.9	16	100	0	62	32	0	6	61	1.21
13950838--13950894	23	2.5	23	78	13	64	33	8	3	54	1.48
13957268--13957324	21	2.7	22	76	20	59	40	0	1	57	1.09
13959095--13959168	21	3.7	19	75	12	69	64	0	1	33	1.02
13959095--13959170	40	1.9	39	84	7	100	65	0	1	32	1.01
13959112--13959170	19	3.1	19	77	17	68	71	0	0	28	0.87
13959268--13959315	3	16.0	3	100	0	96	66	0	0	33	0.92
13972314--13972360	8	6.0	8	80	5	51	8	14	0	76	1.01
13972319--13972360	15	2.7	16	81	7	50	9	11	0	78	0.96
13972408--13972462	27	2.0	27	85	0	74	27	43	3	25	1.71
13973203--13973243	19	2.2	19	90	0	64	48	2	17	31	1.60
13973454--13973494	21	1.9	22	90	5	66	36	0	0	63	0.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
13979489--13979517	6	4.8	6	100	0	58	0	0	65	34	0.93
13984293--13984327	17	2.0	18	88	5	54	11	17	8	62	1.52
13993262--13993390	50	2.5	50	84	9	154	39	1	10	48	1.46
13993772--13993822	21	2.4	21	78	9	59	27	5	3	62	1.36
14000843--14000873	6	5.2	6	100	0	62	32	16	35	16	1.91
14003311--14003337	13	2.1	13	100	0	54	55	0	7	37	1.28
14008484--14008524	21	2.0	21	90	0	64	24	0	7	68	1.15
14008669--14008702	10	3.5	10	88	8	52	20	0	0	79	0.73
14012379--14012426	20	2.4	21	76	13	57	70	0	22	6	1.09
14013482--14013530	16	3.2	16	77	16	68	36	0	4	59	1.17
14014957--14015238	151	1.9	150	82	5	354	19	13	17	49	1.79
14028392--14028455	24	2.7	23	82	7	65	57	1	1	39	1.17
14029976--14030105	37	3.6	37	81	5	149	39	25	20	14	1.91
14029964--14030119	37	4.3	36	78	8	147	37	26	21	14	1.92
14029964--14030120	71	2.2	74	85	5	214	37	26	21	14	1.92
14030087--14030140	21	2.6	21	87	0	72	38	27	22	11	1.88
14030053--14030178	58	2.2	55	85	4	162	36	26	23	13	1.92
14030108--14030226	37	3.2	37	91	0	184	32	31	23	12	1.92
14032744--14032774	2	15.5	2	100	0	62	48	0	0	51	1.00
14034903--14034948	4	11.5	4	95	0	65	26	6	23	43	1.78
14036821--14036855	18	1.9	19	88	11	56	71	0	5	22	1.07
14041794--14041834	20	2.0	21	86	13	59	9	34	0	56	1.32
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14042207--14042344	68	2.0	69	81	4	163	36	15	19	28	1.92
14043909--14043947	21	1.9	20	89	5	60	35	2	0	61	1.10
14043923--14043961	18	2.2	18	86	9	53	35	5	0	58	1.20
14050316--14050342	5	5.4	5	100	0	54	40	0	0	59	0.98
14050576--14050627	20	2.7	18	77	19	52	61	3	5	28	1.37
14052605--14052634	15	2.0	15	93	0	51	50	13	30	6	1.67
14055230--14055265	15	2.3	16	90	4	56	36	0	0	63	0.94
14057043--14057184	71	2.0	71	97	0	266	42	11	24	20	1.86
14063698--14063727	11	2.6	11	94	5	51	70	0	0	30	0.88
14066159--14066214	29	1.9	29	85	7	78	33	3	10	51	1.54
14074736--14074786	25	2.1	24	85	3	66	33	0	1	64	1.05
14074746--14074784	16	2.4	16	87	8	53	30	0	2	66	1.05
14074749--14074808	18	3.4	16	76	17	57	26	0	1	71	0.95
14077706--14077776	30	2.4	30	100	0	142	26	23	5	43	1.76
14083640--14083665	2	13.0	2	100	0	52	50	0	0	50	1.00
14093613--14093637	10	2.5	10	100	0	50	64	0	12	24	1.27
14105194--14105282	46	1.9	46	90	4	144	21	11	11	56	1.65
14105444--14105550	53	2.0	53	100	0	214	44	18	9	27	1.80
14105726--14105814	46	1.9	46	90	4	144	56	11	11	21	1.65
14117113--14117157	22	2.2	20	84	8	54	46	0	2	51	1.13
14117257--14117281	13	1.9	13	100	0	50	80	0	8	12	0.92
14117566--14117624	29	2.0	29	80	6	66	23	16	8	50	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14117858--14117890	7	4.7	7	92	0	57	0	27	0	72	0.85
14119723--14119787	31	2.2	30	86	5	87	21	18	10	49	1.78
14119673--14119859	88	2.1	89	83	5	236	23	14	12	49	1.78
14120014--14120164	60	2.6	58	85	7	191	50	10	16	22	1.76
14120073--14120163	28	3.1	28	64	6	65	52	8	15	23	1.70
14120293--14120344	22	2.3	23	81	12	56	44	0	1	53	1.11
14123661--14123750	30	3.0	30	77	9	94	34	26	3	35	1.73
14123657--14123894	29	8.1	28	66	22	98	30	28	4	36	1.76
14123729--14123835	30	3.6	30	69	23	84	31	29	3	34	1.75
14123660--14123849	59	3.2	59	80	5	233	32	29	3	34	1.75
14136064--14137105	200	5.2	200	90	1	1541	36	20	21	20	1.95
14137472--14137531	17	3.5	17	79	0	66	40	3	5	51	1.40
14138153--14138425	58	4.7	59	93	3	446	31	31	1	34	1.67
14138153--14138425	117	2.3	118	92	3	453	31	31	1	34	1.67
14141346--14141400	28	2.0	27	89	10	85	49	10	14	25	1.76
14141346--14141400	27	2.0	28	86	10	78	49	10	14	25	1.76
14141444--14141496	25	2.1	25	93	6	90	58	3	1	35	1.27
14144952--14144991	17	2.3	17	86	4	53	37	5	0	57	1.21
14146005--14146138	45	3.0	44	85	3	196	44	10	19	26	1.83
14146316--14146385	27	2.6	28	73	15	74	42	15	22	18	1.88
14148109--14148133	13	1.9	13	100	0	50	4	56	0	40	1.18
14160693--14160766	37	2.0	36	92	2	121	35	4	12	48	1.59
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14161108--14161157	21	2.6	19	76	14	57	40	0	4	56	1.18
14165427--14165491	33	2.0	33	96	0	121	55	3	6	35	1.40
14166952--14166981	6	4.8	6	92	8	51	0	16	3	80	0.85
14166952--14166981	13	2.4	12	94	5	51	0	16	3	80	0.85
14168797--14169018	106	2.1	107	88	8	330	28	18	15	36	1.92
14168925--14169013	46	1.9	46	84	4	117	32	21	12	33	1.90
14169036--14169252	97	2.2	96	83	9	262	32	15	13	38	1.86
14169072--14169255	97	1.9	97	87	4	273	32	15	14	36	1.88
14170917--14170971	24	2.3	24	100	0	110	21	56	3	18	1.57
14174228--14174298	17	4.1	17	87	8	99	56	1	0	42	1.08
14174228--14174300	35	2.1	35	89	5	112	56	1	0	42	1.08
14174243--14174301	11	5.2	11	73	15	57	59	1	0	38	1.08
14174490--14174557	6	11.3	6	80	12	77	42	1	1	54	1.18
14174481--14174554	17	4.6	16	83	11	89	39	1	1	58	1.15
14174728--14174758	15	2.1	15	100	0	62	19	54	12	12	1.70
14175227--14175269	15	2.7	16	89	7	61	58	0	0	41	0.98
14175880--14175913	15	2.2	16	90	10	54	67	2	11	17	1.34
14176351--14176547	30	6.5	30	86	1	261	35	23	5	36	1.77
14176534--14176907	59	6.4	59	89	1	500	29	27	7	36	1.83
14176551--14176879	30	11.2	29	65	11	159	28	27	7	36	1.84
14176534--14176907	177	2.1	176	89	1	561	29	27	7	36	1.83
14189707--14190512	68	11.8	68	91	3	1223	33	15	20	30	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14189700--14190512	137	6.0	137	90	3	1220	33	16	20	30	1.94
14190849--14190916	6	11.3	6	80	12	77	42	1	1	54	1.18
14190840--14190913	17	4.6	16	83	11	89	39	1	1	58	1.15
14191567--14191610	15	2.8	15	89	6	61	61	0	0	38	0.96
14192217--14192250	15	2.2	16	90	10	54	67	2	11	17	1.34
14192700--14192819	30	4.0	30	84	2	161	35	25	5	33	1.80
14192688--14192819	60	2.2	59	89	2	192	35	24	5	34	1.78
14192804--14193118	59	5.4	58	83	4	368	30	26	6	36	1.81
14192865--14193090	29	7.8	29	69	13	144	30	26	6	35	1.81
14192844--14193111	30	9.1	30	64	21	95	30	27	5	36	1.80

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135