Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  135  of  135  ( 16099 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43670821--43670877
28
2.0
28
100
0
114
22
21
24
31
1.98
43676249--43676308
25
2.4
25
91
0
102
36
13
18
31
1.89
43676314--43676349
13
2.8
13
91
0
54
36
0
22
41
1.54
43681386--43681541
81
1.9
81
98
0
303
34
20
5
39
1.77
43682847--43682974
63
2.0
63
100
0
256
25
21
7
45
1.78
43683972--43684068
7
13.9
7
73
0
68
18
6
34
41
1.76
43683942--43684066
14
8.9
14
75
0
106
19
6
33
40
1.77
43686995--43687037
19
2.3
18
84
8
50
55
0
4
39
1.20
43687574--43687677
23
4.6
22
78
4
75
40
25
21
13
1.89
43687642--43687695
23
2.3
23
96
0
99
44
22
24
9
1.81
43692116--43692166
26
2.0
26
92
7
88
60
3
3
31
1.33
43695122--43695158
18
2.1
18
89
0
56
37
0
5
56
1.22
43696780--43696819
20
2.0
20
90
0
62
15
10
30
45
1.78
43696946--43696995
23
2.2
24
82
10
61
20
0
24
56
1.43
43698318--43698370
26
2.0
26
82
7
63
30
5
7
56
1.50
43701872--43701913
16
2.7
15
85
7
57
52
0
0
47
1.00
43701883--43701914
16
2.0
16
100
0
64
56
0
0
43
0.99
43701886--43701924
16
2.5
16
87
4
53
58
0
0
41
0.98
43711136--43711324
7
27.1
7
99
0
371
0
28
57
14
1.38

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135

The End!