genome.fa.s10.2.7.7.80.10.50.1000.76.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  76  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25360980--25361014	18	1.9	18	94	0	61	25	8	0	65	1.21
25367301--25367354	21	2.6	21	84	0	72	37	24	9	29	1.86
25368122--25368434	94	3.4	94	82	1	371	30	22	17	29	1.97
25371930--25372127	98	2.0	98	100	0	396	43	21	11	24	1.84
25375437--25375533	17	5.7	17	71	22	62	52	5	2	40	1.35
25375636--25375674	20	2.0	19	90	5	60	28	7	5	58	1.47
25377384--25377426	20	2.2	20	100	0	86	23	0	34	41	1.55
25379104--25379148	22	2.0	22	83	8	56	42	6	8	42	1.62
25387871--25387910	16	2.4	18	80	20	59	52	2	0	45	1.14
25389368--25389413	21	2.1	23	88	8	69	43	2	30	23	1.66
25389430--25389462	16	2.0	17	88	5	50	54	0	45	0	0.99
25397404--25397462	30	2.0	30	82	0	73	25	32	30	11	1.92
25401388--25401430	11	3.9	11	81	0	50	74	4	4	16	1.16
25401388--25401430	22	2.0	22	85	0	59	74	4	4	16	1.16
25401457--25401520	6	10.3	6	77	12	58	15	7	0	76	1.00
25401457--25401520	19	3.4	18	81	12	76	15	7	0	76	1.00
25401457--25401525	13	5.4	13	89	5	88	17	7	0	75	1.02
25403309--25403365	30	1.9	30	96	0	105	26	24	31	17	1.97
25405375--25405401	3	9.0	3	100	0	54	66	0	0	33	0.92
25406384--25406416	9	3.7	9	91	0	57	51	21	0	27	1.48
25406379--25406414	18	2.0	18	94	0	63	50	19	0	30	1.48
25406411--25406458	20	2.3	22	78	10	55	43	4	0	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25408249--25408355	53	2.0	53	90	0	169	32	13	3	50	1.59
25409681--25409720	21	1.9	21	89	0	62	60	10	7	22	1.54
25410214--25410251	9	4.2	9	86	0	58	31	10	10	47	1.72
25413296--25413464	24	7.0	24	93	0	266	31	24	17	26	1.97
25413484--25413702	81	2.7	82	90	4	345	31	26	18	23	1.97
25422186--25422210	5	5.0	5	100	0	50	20	0	20	60	1.37
25422351--25422379	15	2.0	15	93	6	51	31	20	0	48	1.50
25424023--25424134	29	3.9	28	86	6	152	41	24	15	19	1.90
25429240--25429278	20	2.0	20	89	0	60	38	10	2	48	1.51
25429245--25429288	20	2.2	20	84	8	54	38	11	2	47	1.52
25437241--25437274	12	2.8	12	91	8	52	70	0	29	0	0.87
25440617--25441143	146	3.6	145	87	3	702	43	4	9	42	1.57
25440628--25440978	50	7.1	47	67	19	148	43	4	9	42	1.58
25441695--25441740	20	2.2	21	84	3	58	21	10	0	67	1.21
25458860--25458933	26	2.8	26	84	8	96	31	21	18	28	1.97
25459967--25460007	17	2.3	18	87	8	66	51	12	19	17	1.76
25466270--25466337	21	3.2	21	73	8	66	11	17	30	39	1.86
25478455--25478602	42	3.5	42	86	4	219	41	8	25	24	1.83
25478424--25478658	42	5.6	42	79	10	194	38	11	27	22	1.88
25478588--25478696	44	2.5	44	96	0	200	33	11	29	24	1.91
25481659--25481740	43	1.9	43	97	0	155	36	24	17	21	1.94
25485467--25485505	16	2.4	16	91	8	62	35	2	0	61	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25496206--25496243	17	2.2	17	86	9	51	21	15	7	55	1.66
25498387--25498435	24	2.1	24	84	3	64	24	12	10	53	1.69
25517721--25517765	22	2.0	24	86	8	67	33	26	6	33	1.83
25522542--25522604	22	2.9	22	79	13	69	38	15	25	20	1.92
25523961--25524058	48	2.0	51	86	8	139	41	3	2	53	1.28
25524506--25525063	278	2.0	278	96	0	1026	38	23	10	27	1.88
25525595--25525625	15	2.1	15	100	0	62	25	19	6	48	1.72
25526913--25526958	25	2.0	25	87	12	71	41	8	13	36	1.75
25530236--25530289	27	2.0	27	96	0	99	38	33	5	22	1.77
25532352--25533139	102	7.7	102	83	4	853	35	18	17	28	1.93
25532352--25533132	306	2.6	305	84	3	955	35	18	17	28	1.93
25532880--25533183	52	5.9	52	67	12	189	35	17	17	28	1.93
25534626--25534655	15	2.0	15	93	0	51	43	6	0	50	1.28
25537245--25537279	18	1.9	18	88	0	52	68	2	17	11	1.31
25543666--25543701	16	2.2	16	95	0	63	58	13	5	22	1.56
25565156--25565342	95	2.0	95	97	0	356	33	19	10	36	1.87
25569825--25569877	25	2.1	25	96	0	97	37	24	18	18	1.94
25571336--25571365	15	1.9	16	93	6	53	60	0	36	3	1.14
25587451--25587489	18	2.2	18	90	0	60	25	17	25	30	1.97
25604903--25604958	3	18.7	3	78	14	62	67	0	32	0	0.91
25604904--25604958	15	3.7	15	85	7	76	67	0	32	0	0.91
25604906--25604959	27	2.0	27	89	7	83	68	0	31	0	0.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25605339--25605375	16	2.3	16	90	0	56	10	16	10	62	1.55
25613375--25613415	17	2.4	18	80	19	52	14	17	17	51	1.77
25613297--25613619	162	2.0	161	96	0	592	26	15	16	41	1.88
25615615--25616195	305	1.9	306	97	0	1110	34	10	17	37	1.85
25617401--25617457	24	2.4	24	88	5	80	24	15	12	47	1.80
25624643--25624671	12	2.3	13	94	5	51	72	3	0	24	1.00
25627546--25627582	15	2.4	16	90	4	58	62	5	18	13	1.50
25639502--25639544	15	2.7	16	89	7	61	53	0	2	44	1.13
25640733--25640799	31	2.2	31	86	5	91	26	13	10	49	1.74
25641769--25641814	21	2.2	21	88	3	67	30	10	34	23	1.89
25664001--25664031	16	1.9	16	93	0	53	61	0	16	22	1.34
25664832--25664884	26	2.0	26	88	0	79	30	22	22	24	1.99
25664880--25664973	38	2.5	38	76	11	104	28	12	25	32	1.93
25666431--25666540	37	2.9	36	73	20	100	51	2	0	44	1.21
25666446--25666540	37	2.5	38	81	13	106	50	3	1	45	1.24
25675429--25675468	21	2.0	21	85	5	55	22	15	22	40	1.91
25676774--25676862	44	2.0	44	86	4	126	31	13	30	24	1.94
25683040--25683271	126	1.8	126	92	0	392	29	14	23	32	1.94
25684710--25684842	62	2.2	58	86	6	187	41	1	4	52	1.31
25692266--25692305	3	13.3	3	94	0	71	62	0	2	35	1.09
25692304--25692341	3	12.7	3	100	0	76	34	0	31	34	1.58
25692747--25693493	42	18.0	42	82	7	809	36	24	17	22	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25693333--25693400	33	2.1	33	88	0	100	35	29	16	19	1.93
25693291--25693442	75	2.0	75	93	0	259	36	27	15	20	1.93
25693249--25693484	117	2.0	117	89	6	363	36	26	15	21	1.93
25698502--25698536	18	1.9	18	88	11	54	54	0	17	28	1.43
25704326--25704365	21	1.9	21	100	0	80	47	22	5	25	1.71
25706429--25706937	153	3.4	150	84	6	620	43	10	3	42	1.55
25717553--25717593	12	3.5	12	86	3	57	78	0	7	14	0.96
25717553--25717592	17	2.4	17	87	8	55	77	0	7	15	0.98
25731307--25731350	15	3.0	15	90	3	63	13	11	4	70	1.31
25742791--25742823	15	2.2	15	100	0	66	48	30	0	21	1.50
25743031--25743081	21	2.4	22	83	9	79	0	43	19	37	1.51
25743069--25743223	66	2.4	65	93	2	258	13	26	18	41	1.87
25750882--25750916	5	7.2	5	87	6	54	0	20	0	80	0.72
25750882--25750926	15	3.1	14	87	9	56	0	22	0	77	0.76
25762479--25762513	14	2.4	15	90	4	54	5	8	2	82	0.91
25762478--25762523	14	2.9	16	81	15	51	8	10	2	78	1.05
25763878--25763929	18	2.9	18	82	0	59	40	11	5	42	1.65
25767055--25767098	19	2.4	18	88	3	61	9	11	2	77	1.08
25768531--25768564	12	2.8	12	86	0	50	26	5	2	64	1.30
25788730--25788766	7	5.6	7	84	9	51	27	0	2	70	1.01
25793928--25794269	52	6.6	52	86	1	438	27	16	22	33	1.95
25794937--25795057	21	5.7	21	72	11	84	29	10	26	33	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
25794954--25795055	22	4.8	21	79	3	105	29	11	24	34	1.91
25794954--25795055	43	2.4	43	94	0	177	29	11	24	34	1.91
25796584--25796622	3	13.0	3	100	0	78	33	0	33	33	1.58
25797171--25797228	24	2.5	23	78	10	64	50	0	1	48	1.11
25797312--25797354	22	2.1	22	87	12	65	39	2	0	58	1.11
25798045--25798098	21	2.5	22	84	3	65	11	5	11	72	1.28
25799741--25799771	13	2.3	14	94	5	55	25	0	3	70	1.02
25800053--25800081	14	2.0	15	93	6	51	72	0	0	27	0.85
25800745--25800794	22	2.3	22	79	6	57	54	4	0	42	1.19
25801798--25801832	12	2.8	12	91	4	52	80	0	5	14	0.89

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135