genome.fa.s10.2.7.7.80.10.50.1000.79.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  79  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26424964--26425653	78	8.9	78	80	3	678	24	19	30	24	1.98
26424946--26425652	156	4.5	157	83	2	788	25	19	30	24	1.98
26437890--26437978	29	3.0	29	81	6	99	38	2	21	38	1.66
26437961--26438120	29	5.5	29	77	7	128	30	4	29	35	1.77
26437941--26438242	59	5.2	59	75	11	191	33	3	27	35	1.74
26438043--26438287	29	8.3	28	74	13	158	35	3	26	34	1.74
26438037--26438266	57	3.9	58	78	10	197	34	3	26	35	1.75
26440085--26440147	17	3.8	17	82	4	65	61	1	0	36	1.05
26440074--26440138	17	4.1	17	75	20	68	63	1	0	35	1.04
26440077--26440144	16	4.3	16	80	7	77	60	1	0	38	1.06
26441158--26441554	188	2.1	185	87	5	559	35	12	14	37	1.84
26445029--26445200	68	2.5	68	92	0	272	27	14	20	37	1.92
26448161--26448203	21	2.0	22	95	4	79	13	9	4	72	1.26
26450940--26450990	4	13.5	4	84	12	56	17	3	0	78	0.90
26452507--26452551	19	2.4	19	81	7	56	37	0	4	57	1.19
26454905--26455186	43	6.6	43	82	2	280	21	14	23	39	1.91
26455966--26456013	22	2.2	22	92	0	78	25	18	31	25	1.98
26460471--26460514	23	2.0	22	86	4	61	38	0	13	47	1.43
26465944--26465987	23	2.0	22	86	4	61	38	0	15	45	1.47
26472924--26472980	18	3.2	17	77	5	51	45	24	10	19	1.81
26481324--26481498	68	2.6	68	91	0	287	31	14	17	37	1.89
26482718--26482889	68	2.5	68	84	2	220	30	12	18	38	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26484056--26484235	68	2.6	68	89	0	252	28	13	20	37	1.90
26489258--26489319	18	3.4	18	81	2	70	25	19	22	32	1.97
26501099--26501141	9	4.8	9	79	0	50	79	0	18	2	0.85
26505710--26505795	38	2.2	38	80	11	95	62	8	0	29	1.23
26505906--26505973	23	3.1	22	75	12	68	64	22	4	8	1.40
26505922--26506035	56	2.0	56	88	3	167	67	17	6	8	1.38
26505981--26506015	12	2.9	12	91	0	61	68	20	5	5	1.31
26505976--26506136	20	7.5	21	73	12	69	68	16	6	8	1.34
26505900--26506001	44	2.4	44	79	9	104	66	19	4	8	1.37
26505942--26506135	56	3.6	56	75	12	179	67	17	6	8	1.38
26506044--26506119	20	3.8	20	83	1	80	73	13	5	7	1.22
26510687--26510731	20	2.1	22	84	8	58	42	4	2	51	1.34
26511184--26511255	29	2.4	30	86	4	92	51	9	4	34	1.54
26511556--26511619	27	2.2	30	83	8	80	23	1	6	68	1.21
26511556--26511621	28	2.3	27	77	10	69	24	1	6	68	1.21
26513548--26513587	2	20.0	2	94	0	71	50	2	0	47	1.14
26514391--26514457	31	2.2	31	84	7	84	34	8	5	50	1.58
26518646--26518725	31	2.6	31	86	4	108	30	5	8	56	1.51
26519025--26519062	20	2.0	20	85	10	53	60	7	5	26	1.46
26520678--26520723	24	1.9	23	86	8	65	54	6	6	32	1.52
26522715--26522773	6	10.3	6	78	7	52	74	3	1	20	1.05
26522715--26522773	17	3.5	17	81	4	66	74	3	1	20	1.05
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26522714--26522770	22	2.5	22	82	5	78	71	3	1	22	1.10
26522780--26522817	20	1.9	20	88	0	58	28	2	0	68	1.03
26532423--26532464	20	2.1	20	86	0	57	28	21	4	45	1.72
26533022--26533110	17	5.2	17	77	14	94	40	3	3	52	1.34
26533022--26533111	11	8.0	11	71	20	55	40	3	3	53	1.34
26533036--26533094	28	2.1	28	84	6	75	40	3	3	52	1.35
26533818--26533869	22	2.4	22	82	17	65	53	0	0	46	1.00
26534934--26535195	30	8.9	30	74	14	149	36	22	4	36	1.75
26534938--26535195	29	8.7	30	73	11	151	36	21	4	36	1.75
26534947--26535200	59	4.3	58	76	8	205	36	22	4	36	1.76
26536396--26536445	20	2.4	21	81	15	52	42	10	0	48	1.37
26544369--26544442	26	2.9	27	76	8	73	50	0	0	50	1.00
26544340--26544426	26	3.3	26	70	3	84	45	0	2	51	1.13
26544590--26544645	16	3.5	16	77	0	67	32	26	5	35	1.79
26553804--26553878	24	3.1	24	86	0	96	54	8	10	26	1.62
26562769--26563087	165	2.0	160	93	3	548	47	10	12	28	1.75
26564053--26564081	9	3.2	9	100	0	58	68	0	10	20	1.18
26565946--26566428	61	8.1	60	76	7	384	25	18	15	39	1.90
26565963--26566421	119	3.9	120	76	11	410	25	18	15	40	1.89
26565973--26566421	60	7.6	59	76	10	345	25	17	15	41	1.89
26565960--26566417	180	2.6	178	81	5	500	25	18	15	40	1.90
26566140--26566358	118	1.8	119	81	8	277	28	19	12	38	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26573176--26573259	24	3.4	24	69	18	82	17	29	19	33	1.95
26573171--26573379	50	4.2	50	83	0	220	21	25	17	36	1.94
26573288--26573366	24	3.2	24	71	13	70	21	22	16	39	1.92
26583164--26583207	23	2.0	22	86	4	61	45	15	0	38	1.47
26584465--26584565	25	4.0	25	86	1	85	29	21	17	30	1.97
26584479--26584565	25	3.5	25	91	0	138	28	24	19	27	1.98
26584734--26584795	28	2.2	28	88	0	97	45	24	11	19	1.83
26587576--26587619	21	2.1	21	83	8	54	61	11	4	22	1.48
26589924--26590075	79	1.9	80	86	1	216	24	15	16	43	1.87
26594451--26594517	33	2.0	33	100	0	134	35	14	11	37	1.84
26594812--26594856	21	2.0	22	83	8	56	20	6	0	73	1.05
26596146--26596202	24	2.4	24	90	0	96	21	21	24	33	1.97
26601248--26601335	44	2.0	44	95	0	158	30	14	21	32	1.94
26606536--26606596	12	4.8	12	73	16	52	65	0	31	3	1.09
26612661--26612719	15	4.1	15	71	22	54	61	3	0	35	1.13
26616341--26616442	16	5.8	16	70	24	71	9	18	29	42	1.82
26616338--26616483	37	3.9	37	87	2	213	9	17	30	41	1.82
26616356--26616426	21	3.6	21	69	18	71	8	18	29	43	1.79
26618156--26618184	15	1.9	15	100	0	58	31	13	27	27	1.94
26619384--26619439	29	1.9	29	82	7	69	53	12	5	28	1.60
26637544--26637578	18	1.9	18	94	0	61	54	11	17	17	1.71
26645893--26645929	18	2.1	18	89	0	56	24	27	0	48	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26653156--26653248	22	4.3	21	74	8	80	25	37	18	18	1.93
26659960--26660008	21	2.4	21	83	10	57	46	34	4	14	1.63
26660067--26660104	13	2.8	14	88	4	51	23	21	21	34	1.97
26660719--26660746	2	14.0	2	100	0	56	50	0	0	50	1.00
26674258--26674395	40	3.5	39	75	7	127	38	26	18	15	1.92
26674359--26674389	16	1.9	16	93	0	53	32	38	19	9	1.84
26679261--26679338	19	4.2	19	85	6	106	25	24	17	32	1.97
26683483--26683543	23	2.7	23	82	10	88	39	6	21	32	1.79
26684812--26684836	12	2.1	12	100	0	50	36	8	16	40	1.77
26687290--26687385	36	2.7	36	93	0	156	34	16	28	20	1.95
26687362--26687415	28	1.9	28	96	0	99	29	18	29	22	1.97
26691613--26691663	21	2.4	21	96	0	93	23	9	33	33	1.88
26696610--26696657	24	2.0	25	83	4	62	37	16	8	37	1.79
26704984--26705036	26	2.0	26	85	10	72	45	0	1	52	1.11
26706843--26706973	23	5.5	22	76	12	109	12	29	19	38	1.88
26706856--26706974	48	2.5	47	82	9	141	14	28	19	37	1.91
26720536--26720709	37	4.8	37	85	2	201	35	31	18	13	1.90
26720629--26720692	21	3.3	20	68	20	55	37	34	15	12	1.85
26723245--26723276	6	5.5	6	96	3	57	15	0	0	84	0.63
26733161--26736592	216	15.9	215	84	3	4021	40	13	17	27	1.88
26735295--26735343	24	2.0	24	92	0	80	32	18	28	20	1.96
26735080--26735545	238	2.0	240	88	1	695	40	13	17	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
26738573--26738610	15	2.5	15	83	8	51	7	13	7	71	1.31
26746648--26746694	19	2.5	19	89	0	67	25	2	27	44	1.65
26748440--26748528	43	2.1	43	93	0	151	42	3	14	39	1.62
26751986--26752021	2	18.0	2	100	0	72	50	0	0	50	1.00
26752476--26752554	36	2.2	37	97	2	151	16	24	21	37	1.93
26757607--26757653	19	2.5	19	89	0	67	25	2	27	44	1.65
26759401--26759489	43	2.1	43	93	0	151	42	3	14	39	1.62
26762949--26762986	2	19.0	2	100	0	76	50	0	0	50	1.00
26763441--26763520	37	2.2	37	100	0	160	16	25	21	37	1.93
26785619--26785644	11	2.4	11	100	0	52	38	0	7	53	1.30

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135