genome.fa.s10.2.7.7.80.10.50.1000.18.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  18  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7669272--7669325	21	2.6	21	100	0	108	24	18	11	46	1.81
7672001--7672054	20	2.6	20	88	5	72	44	29	1	24	1.64
7673210--7673344	40	3.4	38	73	12	96	30	28	20	20	1.98
7674145--7674181	9	4.3	9	80	13	51	8	13	2	75	1.13
7674149--7674181	16	2.0	17	88	5	50	9	12	3	75	1.14
7674204--7674264	11	5.1	12	77	13	54	52	1	0	45	1.10
7674189--7674264	13	6.2	12	73	15	57	50	1	1	47	1.18
7680276--7680410	40	3.4	38	73	12	96	30	28	20	20	1.98
7681163--7681187	13	1.9	13	100	0	50	0	44	8	48	1.32
7681210--7681246	9	4.3	9	80	13	51	8	13	2	75	1.13
7681214--7681246	16	2.0	17	88	5	50	9	12	3	75	1.14
7681269--7681329	11	5.1	12	77	13	54	52	1	0	45	1.10
7681254--7681329	13	6.2	12	73	15	57	50	1	1	47	1.18
7682866--7682922	21	2.9	21	76	10	66	26	1	21	50	1.58
7687350--7687377	5	5.6	5	100	0	56	82	0	0	17	0.68
7687320--7687377	10	5.7	10	75	16	57	75	0	0	24	0.80
7689441--7689520	30	2.7	30	90	0	124	25	52	6	16	1.66
7689506--7689578	36	2.0	36	84	5	94	32	52	6	8	1.58
7698775--7698893	50	2.4	50	80	7	134	46	1	7	44	1.42
7707990--7708025	7	5.0	7	90	6	54	58	0	0	41	0.98
7710803--7710845	14	3.2	13	83	12	52	23	0	2	74	0.93
7713194--7713255	28	2.2	29	77	16	67	22	9	32	35	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7713240--7713604	58	6.3	59	89	3	512	33	2	30	33	1.71
7713240--7713604	173	2.1	176	90	4	571	33	2	30	33	1.71
7713240--7713574	29	11.5	28	69	18	195	33	2	30	33	1.72
7714494--7714523	3	10.0	3	92	0	51	33	3	0	63	1.11
7715339--7715403	6	10.8	6	77	12	71	58	0	0	41	0.98
7715340--7715420	17	4.9	17	88	10	123	56	2	0	40	1.12
7715346--7715397	11	4.9	11	77	17	65	61	0	0	38	0.96
7715340--7715398	31	1.9	31	100	0	118	59	0	0	40	0.97
7718651--7718708	6	9.7	6	94	0	62	0	56	0	43	0.99
7718651--7718708	18	3.2	18	90	0	80	0	56	0	43	0.99
7718668--7718710	6	7.2	6	97	0	77	0	65	0	34	0.93
7728107--7728158	22	2.3	23	83	9	63	63	3	0	32	1.12
7728120--7728195	6	12.0	6	78	8	71	65	2	1	30	1.14
7728109--7728195	12	7.2	12	72	11	70	65	3	1	29	1.16
7728804--7728868	31	2.1	31	85	0	85	47	7	10	33	1.67
7738595--7738619	12	2.1	12	100	0	50	48	16	12	24	1.79
7744634--7744659	4	6.5	4	100	0	52	53	0	0	46	1.00
7752915--7752955	6	6.8	6	100	0	82	0	48	0	51	1.00
7754615--7754696	6	13.8	6	69	16	55	40	3	0	56	1.17
7754613--7754683	11	6.5	11	75	15	67	39	2	0	57	1.13
7754615--7754712	31	3.3	29	83	6	108	42	3	0	54	1.16
7754662--7754696	17	2.1	17	88	0	52	45	2	0	51	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7754720--7754804	28	3.1	27	77	17	86	47	21	11	20	1.81
7754735--7754804	28	2.5	28	88	6	108	48	21	12	17	1.80
7755414--7755455	18	2.4	19	80	15	54	61	0	4	33	1.17
7755663--7755693	15	2.0	16	93	6	55	38	19	19	22	1.93
7755736--7755787	22	2.2	25	83	13	74	69	5	25	0	1.10
7756224--7756288	33	2.0	33	87	6	96	20	13	7	58	1.60
7756567--7756769	30	6.7	30	86	5	234	38	21	2	36	1.69
7756745--7756942	59	3.4	58	71	7	175	29	27	4	38	1.77
7764103--7764144	2	21.0	2	100	0	84	50	0	0	50	1.00
7771089--7771128	19	2.0	21	85	9	57	42	0	30	27	1.56
7771330--7771366	18	2.1	18	89	0	56	29	10	10	48	1.72
7771416--7771450	18	1.9	18	94	0	61	37	25	11	25	1.90
7785311--7785340	15	1.9	16	93	6	53	46	3	0	50	1.18
7789364--7789425	29	2.2	27	80	11	70	4	29	0	66	1.12
7794212--7794243	16	2.0	16	100	0	64	43	0	6	50	1.27
7808719--7808878	45	3.6	45	92	0	266	18	46	8	26	1.77
7824272--7824305	6	5.7	6	85	0	50	11	17	52	17	1.73
7832236--7832328	43	2.2	42	86	5	125	32	10	9	47	1.71
7833252--7833291	15	2.6	16	84	11	57	55	15	0	30	1.41
7835685--7835756	30	2.4	30	80	2	81	34	2	1	61	1.19
7840448--7840474	6	4.5	6	100	0	54	29	33	0	37	1.58
7841529--7841581	27	2.0	26	88	3	79	35	26	11	26	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7844982--7845014	17	1.9	17	88	11	50	36	0	9	54	1.32
7852731--7852765	17	2.1	17	100	0	70	5	5	5	82	0.93
7858550--7858599	2	25.0	2	100	0	100	50	0	0	50	1.00
7858946--7858970	3	8.3	3	100	0	50	0	68	0	32	0.90
7862304--7862482	98	1.8	98	84	4	245	32	10	17	39	1.83
7869618--7869646	2	14.5	2	100	0	58	48	0	0	51	1.00
7870498--7870548	18	2.8	17	82	11	57	47	1	0	50	1.12
7877012--7877045	18	1.9	18	88	5	52	29	0	5	64	1.17
7877150--7877208	31	1.9	30	83	10	75	59	0	0	40	0.97
7877997--7878022	3	8.7	3	100	0	52	30	0	0	69	0.89
7880344--7880374	16	1.9	16	93	0	53	70	0	12	16	1.16
7880642--7880687	25	1.9	23	86	8	65	78	8	10	2	1.05
7882850--7882883	17	2.1	17	88	5	52	14	20	8	55	1.65
7889032--7889074	3	15.0	3	88	9	63	67	2	0	30	1.03
7889241--7889278	20	1.9	20	84	10	51	44	0	5	50	1.24
7892753--7892877	23	5.4	23	89	1	162	44	21	23	11	1.84
7892755--7892877	46	2.7	46	88	2	185	43	21	23	11	1.85
7892709--7892853	69	2.1	66	85	10	184	44	20	22	12	1.85
7900021--7900099	23	3.4	23	87	3	115	43	22	25	8	1.82
7902578--7902622	21	2.1	22	84	12	58	60	8	8	22	1.55
7902961--7903016	30	1.9	30	88	3	87	50	0	1	48	1.11
7903412--7903789	188	2.0	188	100	0	756	25	25	15	32	1.96
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7905495--7905540	21	2.2	21	84	0	56	4	19	17	58	1.55
7906424--7906472	20	2.5	20	78	18	57	42	20	6	30	1.76
7906490--7906557	20	3.3	20	78	10	66	29	2	23	44	1.68
7909455--7909498	17	2.5	17	86	13	63	59	2	2	36	1.23
7911952--7912003	24	2.2	24	96	0	95	23	26	13	36	1.92
7911969--7912035	32	2.1	32	86	5	91	26	20	11	40	1.88
7923394--7923441	18	2.7	18	86	0	69	22	27	2	47	1.62
7923394--7923438	6	7.5	6	84	0	54	22	28	2	46	1.63
7926240--7926285	24	1.9	24	82	8	58	47	8	0	43	1.34
7927325--7927366	13	3.2	13	83	6	50	35	2	4	57	1.33
7927412--7927470	30	2.0	30	86	0	82	38	6	18	35	1.78
7929402--7929436	17	2.1	17	88	0	52	45	0	5	48	1.26
7944432--7944551	58	2.1	58	88	3	179	47	19	0	33	1.50
7960716--7960753	2	19.0	2	94	0	67	47	2	0	50	1.15
7965551--7965579	4	7.2	4	100	0	58	75	0	0	24	0.80
7970158--7970196	5	7.8	5	94	0	69	0	58	2	38	1.12
7974222--7974342	62	2.0	62	96	0	224	47	14	9	28	1.76
7999943--7999987	17	2.6	17	89	10	65	37	0	4	57	1.19
8001352--8001389	20	1.9	20	89	10	60	39	0	2	57	1.12
8004448--8004695	61	4.1	61	80	7	249	33	17	16	32	1.92
8004448--8004695	60	4.1	61	80	5	247	33	17	16	32	1.92
8004531--8004860	165	2.0	165	87	5	481	30	21	16	32	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
8004591--8004800	105	2.0	105	94	0	366	30	22	16	30	1.96
8004696--8004965	60	4.4	60	84	6	355	29	21	16	33	1.95
8008687--8008719	12	2.8	12	95	0	57	51	0	9	39	1.34
8008850--8009441	83	7.3	82	87	7	743	36	5	4	53	1.43
8009092--8009124	17	1.9	17	93	0	57	42	3	0	54	1.15
8008853--8009441	165	3.6	162	86	7	758	37	5	4	53	1.44
8009299--8009443	71	2.1	71	94	3	258	35	6	1	56	1.33
8009620--8009676	20	2.8	20	83	2	69	15	29	17	36	1.91
8011858--8011928	30	2.3	30	86	11	92	28	2	5	63	1.31
8011891--8011960	30	2.3	30	82	0	77	27	7	4	61	1.41

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135