genome.fa.s10.2.7.7.80.10.50.1000.40.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  40  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
14968869--14968945	18	4.3	17	82	15	93	58	1	0	40	1.06
14968869--14968940	36	1.9	38	91	5	121	59	1	0	38	1.06
14968900--14968943	22	2.0	22	86	0	61	61	0	0	38	0.96
14968891--14968970	28	2.8	28	78	3	79	55	2	1	41	1.21
14974921--14974993	35	2.1	35	97	0	137	36	31	12	19	1.88
14976475--14976546	34	2.1	34	97	2	137	27	2	31	37	1.71
14976482--14976553	33	2.1	34	92	2	119	27	4	30	37	1.76
14988135--14988186	5	10.4	5	100	0	104	40	0	0	59	0.97
14988284--14988371	32	2.8	32	87	1	124	23	9	10	56	1.61
14988403--14988459	27	2.2	27	84	6	73	14	12	15	57	1.65
14996992--14997038	17	2.7	17	83	3	58	40	6	0	53	1.27
14996954--14997054	52	2.0	51	86	2	139	36	4	3	54	1.41
14998876--14999132	29	8.8	28	79	8	171	36	24	2	35	1.70
14998884--14999287	58	6.9	57	73	13	200	34	25	2	37	1.70
14998984--14999172	29	6.5	30	75	10	126	34	25	1	37	1.66
14999127--14999223	31	3.2	30	78	19	112	30	22	2	44	1.64
14999091--14999287	59	3.4	57	82	8	225	32	25	2	39	1.70
14998916--14999232	146	2.2	147	78	15	318	35	24	2	37	1.68
14999207--14999285	28	2.7	29	76	18	92	31	26	3	37	1.74
14998872--14999273	29	13.7	30	71	16	107	34	24	2	37	1.71
14998872--14999285	30	14.1	29	74	14	196	34	25	2	37	1.71
15004491--15004538	5	10.2	5	82	8	57	81	0	18	0	0.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15005344--15005755	48	8.4	49	81	3	409	40	25	23	10	1.86
15005344--15005753	98	4.2	98	81	4	407	40	25	22	10	1.86
15005871--15006134	103	2.6	103	90	3	426	38	14	16	31	1.88
15006212--15006468	78	3.3	77	80	3	291	24	31	17	26	1.97
15006212--15006468	39	6.6	39	67	13	152	24	31	17	26	1.97
15006557--15007362	206	3.9	206	85	2	1059	34	18	23	22	1.96
15006511--15007288	407	1.9	407	91	0	1277	34	19	23	23	1.97
15007732--15007780	6	8.3	6	77	4	55	42	4	0	53	1.20
15007695--15007794	17	6.0	15	74	18	58	37	4	4	55	1.38
15007732--15007778	17	2.7	17	90	3	67	42	4	0	53	1.20
15007694--15007794	52	2.0	51	86	2	139	37	3	3	54	1.38
15009433--15009625	58	3.3	58	81	8	182	35	21	1	41	1.63
15009401--15009620	87	2.5	86	81	7	230	35	20	2	41	1.67
15009363--15009625	29	9.0	29	73	13	164	35	21	3	39	1.69
15009461--15009682	58	3.8	58	79	12	206	34	21	2	41	1.66
15009401--15009650	87	2.8	90	78	11	209	34	21	2	41	1.67
15009461--15009684	29	7.7	27	71	17	112	33	21	2	41	1.66
15009453--15009712	58	4.5	59	77	12	175	34	22	2	40	1.67
15010956--15010997	22	1.9	22	90	0	66	66	7	7	19	1.39
15018502--15018595	30	3.1	30	84	0	125	27	7	39	25	1.82
15024027--15024058	10	3.3	10	95	4	57	71	0	0	28	0.86
15024854--15024905	26	2.0	26	88	0	77	34	11	5	48	1.63
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15029128--15029166	18	2.2	18	86	9	53	53	2	5	38	1.37
15029513--15029555	17	2.5	17	84	3	50	20	23	4	51	1.66
15029660--15029685	8	3.2	8	100	0	52	26	23	0	50	1.50
15034932--15034974	17	2.5	16	82	14	50	25	20	2	51	1.60
15037288--15039273	584	3.3	596	90	2	3147	33	12	17	36	1.88
15039826--15039850	5	5.0	5	100	0	50	60	20	20	0	1.37
15043190--15043367	93	1.9	93	88	2	268	26	16	26	30	1.97
15056619--15056740	58	2.1	58	90	1	192	36	17	11	35	1.86
15060851--15060892	21	2.0	21	95	0	75	45	11	14	28	1.80
15062518--15062559	13	3.3	12	78	21	50	80	2	2	14	0.90
15062520--15062559	12	3.1	13	82	10	55	82	2	2	12	0.87
15066600--15066631	12	2.8	12	95	4	57	34	0	0	65	0.93
15066611--15066762	6	25.0	6	70	21	95	42	3	0	53	1.19
15066611--15066746	17	7.3	18	82	17	163	40	4	0	55	1.20
15066611--15066762	56	2.7	56	93	3	254	42	3	0	53	1.19
15066663--15066778	17	6.6	16	80	11	79	45	4	0	49	1.27
15066785--15066822	19	2.0	20	94	5	69	47	15	10	26	1.78
15067530--15067573	12	3.5	13	84	9	65	59	0	2	38	1.10
15067530--15067574	18	2.5	17	82	13	54	57	0	2	40	1.11
15068650--15068762	58	1.9	58	91	7	185	36	31	1	30	1.68
15068650--15068739	29	3.1	29	70	24	73	35	34	1	28	1.65
15072268--15072601	29	11.5	28	64	25	108	32	29	2	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15072231--15072639	59	7.0	59	85	4	535	32	29	2	35	1.73
15072230--15072638	117	3.5	117	86	2	547	33	29	2	35	1.72
15080132--15080180	19	2.5	20	77	9	57	44	0	2	53	1.12
15083579--15083637	25	2.4	25	76	18	77	61	3	0	35	1.13
15088938--15089074	23	6.0	23	81	6	136	10	23	23	43	1.84
15088938--15089074	46	3.0	46	79	5	152	10	23	23	43	1.84
15092882--15092981	47	2.2	46	85	5	130	55	10	10	25	1.64
15095577--15095607	7	4.4	7	91	0	53	58	3	0	38	1.15
15110866--15110917	26	2.0	26	88	7	79	40	7	17	34	1.78
15113621--15113664	20	2.2	20	95	0	79	45	2	4	47	1.35
15117863--15117887	2	12.5	2	100	0	50	48	0	0	52	1.00
15119795--15119856	23	2.7	23	82	2	81	51	0	3	45	1.17
15122792--15122887	41	2.3	41	90	0	156	37	27	6	29	1.81
15122877--15122915	17	2.3	17	90	0	60	46	25	12	15	1.81
15124347--15124371	11	2.3	11	100	0	50	84	0	0	16	0.63
15124516--15124616	35	2.9	35	79	5	114	39	1	20	37	1.64
15125448--15125560	55	2.1	55	100	0	226	37	14	12	36	1.83
15143028--15143069	20	2.1	20	86	8	59	57	0	0	42	0.99
15144940--15144996	21	2.6	23	86	10	84	61	0	0	38	0.96
15146131--15146178	20	2.3	21	82	3	53	52	2	2	43	1.24
15146995--15147038	12	3.0	16	71	25	51	75	0	0	25	0.81
15147189--15147245	19	2.9	19	79	5	60	31	3	1	63	1.22
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15149452--15149495	18	2.5	18	81	3	54	36	11	2	50	1.51
15151415--15151502	44	2.0	44	90	0	140	25	10	18	46	1.80
15155724--15155749	1	26.0	1	100	0	52	0	0	100	0	0.00
15156131--15156156	2	13.0	2	100	0	52	50	0	0	50	1.00
15158692--15158738	24	1.9	24	83	12	60	42	2	4	51	1.33
15165578--15165635	18	3.3	17	83	7	80	29	12	6	51	1.65
15165569--15165635	36	1.9	35	90	6	109	32	11	5	49	1.64
15168054--15168133	30	2.7	30	75	7	90	33	15	15	36	1.88
15172093--15172237	43	3.4	43	78	7	109	36	22	11	29	1.89
15172146--15172341	43	4.6	43	79	1	178	37	23	12	26	1.90
15179886--15179968	36	2.3	37	79	12	100	37	0	8	54	1.31
15180083--15180289	41	5.0	41	77	6	195	21	24	16	36	1.94
15180074--15180278	82	2.5	82	80	5	227	22	23	17	37	1.94
15182657--15182703	2	23.5	2	100	0	94	51	0	0	48	1.00
15185525--15186031	253	2.0	253	85	3	689	33	13	16	36	1.88
15189639--15189677	14	2.7	15	84	8	53	20	10	15	53	1.70
15192413--15192447	18	1.9	18	88	0	52	37	2	2	57	1.29
15193289--15193354	30	2.2	30	83	2	80	36	10	9	43	1.71
15193542--15193600	31	2.0	30	86	6	84	49	10	5	35	1.59
15197346--15197384	4	9.8	4	82	0	51	25	5	28	41	1.77
15197348--15197382	12	2.9	12	91	0	61	25	5	28	40	1.78
15199089--15199282	97	2.0	97	100	0	388	34	13	14	38	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15202391--15202546	82	1.9	82	86	0	222	45	2	10	41	1.52
15202391--15202575	82	2.3	82	82	3	212	43	2	10	42	1.53
15205822--15205863	23	1.9	21	81	18	50	54	9	11	23	1.66
15206020--15206059	18	2.4	17	88	12	64	27	5	0	67	1.11
15222619--15222702	41	2.0	41	97	0	159	28	8	11	51	1.68
15223076--15223124	20	2.5	20	76	3	55	26	4	2	67	1.19
15224246--15224304	31	1.9	31	89	0	91	32	10	8	49	1.67
15229296--15229340	23	2.0	22	83	8	56	73	0	0	26	0.84
15232740--15232777	2	19.0	2	100	0	76	50	0	0	50	1.00
15232837--15232875	19	2.1	18	86	13	53	41	5	0	53	1.23

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135