genome.fa.s10.2.7.7.80.10.50.1000.87.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  87  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29679696--29679750	21	2.7	20	78	13	67	12	21	0	65	1.26
29679674--29679723	18	2.9	19	75	22	56	6	24	0	70	1.10
29681565--29681613	24	2.0	24	92	0	80	32	20	8	38	1.82
29683762--29683955	80	2.4	80	90	1	300	31	26	18	23	1.97
29685266--29685340	39	1.9	39	81	10	91	26	24	5	44	1.75
29687844--29687901	26	2.3	26	87	3	82	5	18	1	74	1.10
29689534--29689566	13	2.6	13	90	4	50	9	18	0	72	1.10
29697426--29697486	6	10.0	6	74	22	56	1	22	0	75	0.89
29697424--29697486	24	2.6	25	85	10	85	3	23	0	73	0.98
29698058--29698082	12	2.1	12	100	0	50	68	8	16	8	1.38
29711597--29711654	20	2.8	20	86	5	71	67	0	8	24	1.18
29713316--29714169	100	8.6	98	78	4	697	22	24	16	36	1.94
29713258--29714140	150	5.9	149	77	5	665	23	23	16	36	1.94
29713316--29714169	50	17.1	50	77	5	557	22	24	16	36	1.94
29714553--29714889	98	3.4	98	79	6	383	27	21	18	33	1.96
29723828--29723864	16	2.3	16	90	9	58	70	8	5	16	1.30
29726515--29726560	14	3.4	14	81	3	58	30	2	0	67	1.03
29726672--29726726	20	2.5	21	85	11	67	60	3	0	36	1.15
29726722--29726780	23	2.5	24	81	8	86	42	1	0	55	1.09
29731783--29731964	36	5.1	36	89	2	242	25	25	14	34	1.94
29731975--29732029	19	2.9	19	86	0	74	20	29	21	29	1.98
29738079--29738127	22	2.2	22	85	7	64	71	6	0	22	1.08
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29739678--29739706	15	1.9	15	100	0	58	34	6	0	58	1.25
29746136--29746746	49	12.4	49	70	10	361	35	16	29	18	1.93
29746171--29746743	99	5.8	100	73	10	353	35	16	29	18	1.93
29746284--29746728	148	3.0	145	75	7	387	35	16	29	18	1.93
29747043--29747769	79	9.2	78	85	3	631	28	30	16	25	1.97
29747043--29747776	118	6.2	118	80	3	557	28	30	16	25	1.97
29747050--29747782	276	2.7	275	86	1	1038	28	29	16	25	1.97
29747042--29747793	39	19.1	39	76	3	610	28	29	16	25	1.97
29753644--29753769	36	3.5	36	86	1	182	27	25	12	34	1.92
29754824--29754876	6	8.2	6	76	15	52	73	1	1	22	1.03
29754864--29754920	30	1.9	30	85	7	80	56	0	17	26	1.41
29757446--29757490	20	2.3	19	84	3	54	26	33	0	40	1.57
29759207--29759231	6	4.2	6	100	0	50	32	0	0	68	0.90
29765438--29765463	2	13.0	2	100	0	52	50	0	0	50	1.00
29765580--29765651	35	2.0	37	81	10	87	19	4	15	61	1.50
29772286--29772328	6	7.2	6	100	0	86	32	0	0	67	0.91
29787636--29787671	18	2.0	18	88	0	54	27	0	11	61	1.30
29789168--29789202	5	7.4	5	87	12	56	40	0	0	60	0.97
29789162--29789202	15	2.9	13	83	16	55	39	0	0	60	0.96
29791796--29791889	46	2.1	45	89	2	143	62	10	5	21	1.47
29793293--29793382	46	2.0	46	90	0	144	63	8	5	22	1.44
29795647--29795692	24	2.0	22	83	8	56	30	2	0	67	1.03
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29796695--29796743	21	2.3	22	82	3	64	28	0	4	67	1.09
29808225--29808333	46	2.5	43	83	14	120	33	5	24	36	1.79
29810249--29810281	3	11.3	3	93	6	59	69	0	0	30	0.88
29811308--29811448	27	5.4	27	74	9	114	36	23	22	17	1.95
29811308--29811448	40	3.6	40	76	15	141	36	23	22	17	1.95
29811308--29811441	20	6.7	20	76	4	103	36	23	22	17	1.95
29812004--29812036	16	2.1	16	94	0	57	81	0	18	0	0.68
29812005--29812035	10	3.1	10	95	0	53	87	0	12	0	0.55
29813733--29813817	41	2.1	41	80	8	93	49	1	0	49	1.08
29813784--29813845	24	2.6	24	100	0	124	58	0	0	41	0.98
29816083--29816139	28	2.0	28	100	0	114	40	14	10	35	1.80
29823484--29823567	36	2.3	36	89	0	123	21	17	21	39	1.93
29834686--29835696	215	4.7	216	84	3	1313	27	16	14	40	1.88
29845203--29847270	216	9.6	216	82	2	2361	28	17	13	40	1.88
29845203--29847270	428	4.8	426	82	4	2301	28	17	13	40	1.88
29851207--29851329	62	2.0	62	93	0	210	26	16	16	41	1.88
29851269--29855015	216	17.4	216	84	3	4483	28	16	14	40	1.87
29855079--29855163	30	2.8	32	78	8	79	35	24	17	22	1.95
29862639--29862673	18	1.9	18	100	0	70	80	0	11	8	0.92
29869150--29870676	215	7.2	214	82	5	1771	40	13	17	27	1.87
29869150--29872623	431	8.1	431	70	15	1872	40	13	17	28	1.88
29870191--29870673	213	2.3	212	83	5	591	40	13	17	27	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29870613--29870794	62	3.0	61	84	6	239	39	14	17	28	1.89
29870752--29871225	215	2.2	216	86	0	653	39	14	17	29	1.89
29871191--29871349	62	2.6	61	92	2	255	41	13	17	27	1.87
29870191--29871719	555	2.8	551	85	3	2053	39	14	17	28	1.88
29871285--29872623	216	6.3	216	81	4	1491	39	13	17	29	1.88
29871292--29872048	215	3.5	215	84	1	935	39	13	17	29	1.88
29871285--29872623	413	3.2	419	81	5	1352	39	13	17	29	1.88
29872564--29872749	62	3.0	62	90	0	282	40	16	18	24	1.91
29872685--29873599	211	4.3	211	82	6	1057	39	13	17	28	1.88
29873554--29873723	62	2.7	62	87	0	250	42	15	14	27	1.85
29871758--29873933	968	2.2	963	83	5	2654	40	14	16	28	1.88
29873869--29873994	62	2.0	61	92	1	207	38	19	15	26	1.91
29873325--29873994	336	2.0	337	86	3	936	40	15	15	28	1.88
29873931--29874425	215	2.3	215	87	1	706	41	14	15	28	1.87
29874361--29874549	62	3.0	62	90	0	288	40	15	16	26	1.89
29874878--29874925	7	6.6	7	76	9	51	22	0	47	29	1.51
29880063--29881038	487	2.0	486	96	0	1799	31	16	22	30	1.95
29884919--29884957	13	2.9	14	80	7	53	5	28	0	66	1.12
29886788--29886832	22	2.0	22	100	0	90	17	22	15	44	1.86
29892148--29893365	216	5.7	215	85	2	1554	40	13	17	28	1.87
29893215--29893541	172	1.9	171	87	0	474	44	14	14	26	1.83
29894837--29894980	50	2.8	50	79	6	148	36	11	14	37	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29895187--29895218	16	1.9	17	93	6	57	62	6	0	31	1.20
29897591--29897668	28	2.7	29	77	13	90	16	12	5	65	1.43
29898520--29899230	213	3.3	216	83	4	816	40	14	16	27	1.88
29899165--29899292	63	2.0	62	84	1	166	39	14	16	28	1.88
29898962--29899569	274	2.2	274	86	4	825	40	15	17	26	1.89
29899443--29899621	62	2.9	62	93	0	295	39	17	18	24	1.92
29899165--29900183	339	3.0	339	87	4	1380	40	15	17	27	1.89
29899783--29899966	61	3.0	62	88	2	273	38	13	19	29	1.90
29900552--29900740	62	3.0	62	86	3	281	38	16	17	26	1.92
29900345--29901636	339	3.8	340	88	3	1798	39	15	18	26	1.91
29900892--29901079	62	3.0	62	87	4	274	38	15	18	27	1.91
29901230--29901417	64	3.0	62	89	3	277	38	14	19	28	1.90
29901368--29901995	216	2.9	216	83	4	784	40	15	17	26	1.90
29902033--29902156	62	2.0	62	85	4	169	41	14	19	25	1.89
29901839--29902447	318	1.9	321	82	5	777	40	15	16	27	1.88
29902323--29902438	61	1.9	60	82	5	144	41	16	15	26	1.88
29902599--29902849	62	4.0	62	88	0	358	38	15	18	27	1.92
29903007--29903189	62	3.0	62	88	3	235	40	16	15	26	1.89
29902323--29903189	402	2.2	400	87	3	1242	40	15	17	27	1.89
29902661--29903529	340	2.6	340	89	2	1325	39	16	17	26	1.90
29903001--29903987	402	2.5	402	88	3	1540	39	16	17	26	1.91
29903341--29903591	62	4.0	62	87	0	358	38	17	18	25	1.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29902339--29903928	742	2.1	741	92	2	2656	39	15	17	27	1.90
29903743--29904050	61	5.0	62	89	2	442	37	17	18	26	1.93
29903742--29904050	123	2.5	124	88	2	453	37	17	19	26	1.93
29903345--29904269	462	2.0	464	88	2	1387	38	16	17	26	1.91
29903988--29904484	216	2.3	216	88	5	704	38	14	18	29	1.90
29904421--29904546	62	2.0	61	89	4	191	35	15	19	29	1.93
29904560--29904600	21	2.0	20	90	4	64	43	9	14	31	1.78
29904205--29904762	277	2.0	278	85	2	746	37	13	18	30	1.89
29903930--29904978	493	2.1	494	87	1	1478	38	14	18	28	1.91
29904482--29905623	216	5.3	215	80	3	1165	39	15	17	28	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135