genome.fa.s10.2.7.7.80.10.50.1000.90.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  90  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30334476--30334525	5	9.6	5	81	14	57	18	2	2	78	0.95
30335138--30335289	74	2.1	74	96	1	279	28	25	9	36	1.87
30337912--30337944	12	2.6	13	85	4	50	69	12	3	15	1.30
30337979--30338017	18	2.2	18	86	4	53	7	25	5	61	1.44
30346690--30346741	20	2.5	20	84	9	61	73	0	25	1	0.94
30347661--30347846	49	3.8	49	76	2	176	31	16	31	20	1.95
30347661--30347855	98	2.0	98	80	4	223	31	16	30	21	1.95
30348129--30348342	40	5.4	40	79	7	183	32	24	14	28	1.94
30348342--30348468	50	2.5	51	84	6	179	35	18	25	20	1.95
30348523--30348853	40	8.4	40	78	9	304	33	26	16	23	1.96
30348523--30348852	117	2.8	118	84	4	423	33	26	16	23	1.96
30348876--30349236	154	2.4	154	88	1	519	39	17	19	23	1.92
30372573--30372651	14	5.7	14	78	11	83	77	1	20	1	0.91
30372573--30372658	20	4.6	18	73	15	59	76	1	20	1	0.91
30372573--30372654	35	2.4	33	84	8	101	76	1	20	1	0.92
30372573--30372658	6	12.8	6	79	16	73	76	1	20	1	0.91
30372957--30373830	100	8.7	99	80	4	790	36	18	19	25	1.94
30375444--30375603	23	7.0	23	70	16	125	21	8	20	49	1.75
30375444--30375603	46	3.5	46	93	0	275	21	8	20	49	1.75
30377121--30377162	18	2.3	19	80	12	52	28	26	16	28	1.97
30379827--30379863	18	2.1	18	100	0	74	29	37	5	27	1.79
30386264--30386483	108	2.0	108	97	0	413	29	21	12	36	1.90
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30396387--30396613	43	5.3	44	89	3	329	20	30	22	26	1.98
30396682--30396710	15	1.9	15	100	0	58	48	34	3	13	1.60
30396929--30397085	65	2.4	66	88	1	235	14	24	17	42	1.87
30397625--30397661	18	2.0	19	85	15	51	48	0	16	35	1.46
30402433--30402498	33	2.0	33	94	2	116	43	7	6	42	1.57
30402517--30402580	19	3.3	19	78	16	69	53	0	1	45	1.10
30402520--30402650	29	4.5	29	70	20	87	51	0	2	45	1.13
30402520--30402570	15	3.5	15	71	15	52	52	0	1	45	1.12
30402638--30402904	110	2.5	110	93	4	454	46	5	2	46	1.39
30402866--30402960	25	3.2	32	67	22	98	42	7	4	46	1.51
30402963--30403228	18	14.4	18	66	23	69	45	4	2	48	1.35
30402736--30403404	167	4.0	168	77	15	688	44	5	2	47	1.40
30402903--30403515	111	5.5	112	91	3	909	45	4	3	46	1.40
30403178--30403249	18	4.1	18	75	12	51	47	4	1	47	1.30
30403395--30403431	10	3.9	10	82	13	51	56	8	0	35	1.29
30403397--30403469	18	4.1	18	75	1	67	53	5	1	39	1.33
30404991--30405021	15	2.1	15	100	0	62	12	12	38	35	1.82
30406810--30406878	2	34.5	2	92	0	111	46	1	1	50	1.19
30408919--30409484	41	13.8	41	79	5	455	24	29	24	22	1.99
30408919--30409465	83	6.6	83	83	3	516	24	29	23	22	1.99
30410835--30410966	27	4.9	26	79	10	140	31	18	22	26	1.97
30410830--30410966	54	2.5	54	83	2	168	32	18	22	25	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30416914--30416954	21	2.0	21	95	0	73	56	4	21	17	1.60
30417059--30417351	73	4.0	73	91	0	478	52	3	25	18	1.61
30418172--30418226	29	2.0	27	85	7	74	32	29	30	7	1.84
30418944--30418973	11	2.7	11	89	0	51	56	26	6	10	1.57
30419851--30419906	13	4.3	13	86	13	80	26	25	0	48	1.52
30419838--30419906	26	2.7	26	93	0	93	28	23	0	47	1.52
30427379--30427509	70	1.9	70	90	0	208	24	27	12	35	1.92
30436586--30436613	12	2.3	12	100	0	56	71	0	7	21	1.09
30439164--30439203	21	1.9	21	85	10	55	27	2	15	55	1.53
30444575--30444617	17	2.5	17	75	14	52	46	11	18	23	1.82
30445045--30445069	12	2.1	12	100	0	50	0	28	0	72	0.86
30451049--30451091	18	2.4	18	92	0	68	23	18	27	30	1.98
30455364--30455490	26	4.9	26	70	7	96	28	18	23	29	1.97
30455364--30455490	52	2.4	52	84	0	155	28	18	23	29	1.97
30478836--30478882	15	3.1	15	79	14	60	70	0	29	0	0.88
30478848--30478886	20	2.0	20	89	0	60	71	0	28	0	0.86
30478842--30478911	13	5.5	13	73	14	65	68	1	28	1	1.06
30484502--30484539	17	2.2	18	86	13	53	76	5	5	13	1.13
30492926--30492968	18	2.4	18	84	0	50	23	18	27	30	1.98
30497215--30497364	26	5.8	26	71	6	106	28	18	22	31	1.97
30497215--30497344	52	2.5	52	82	0	161	28	19	22	30	1.98
30502919--30502959	21	2.0	21	85	9	57	34	14	14	36	1.87
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30504814--30504885	17	4.2	17	83	0	81	22	25	9	43	1.83
30505444--30505474	16	2.0	16	93	6	55	77	0	22	0	0.77
30505926--30506040	26	4.4	26	78	8	117	26	20	23	29	1.98
30505917--30506040	52	2.4	52	78	2	142	26	20	23	29	1.99
30522683--30522727	15	2.9	15	81	15	56	68	0	31	0	0.89
30528341--30528387	17	2.6	18	80	19	53	70	6	10	12	1.33
30549752--30549814	21	3.0	21	92	0	108	36	19	9	34	1.84
30553619--30553699	27	3.0	27	90	1	126	22	14	27	35	1.93
30553678--30553906	55	4.2	55	80	2	228	26	16	22	34	1.95
30553678--30553907	110	2.1	110	83	3	284	26	16	22	34	1.95
30567846--30567871	9	2.9	9	100	0	52	11	11	11	65	1.48
30572849--30572900	23	2.3	23	83	6	61	36	13	13	36	1.84
30577490--30577565	11	6.8	11	71	24	61	42	1	1	55	1.16
30585911--30586024	40	2.9	40	89	1	176	27	28	16	27	1.97
30588307--30588355	25	1.9	26	91	4	82	63	8	2	26	1.34
30599230--30599458	51	4.5	51	89	2	327	30	22	14	32	1.94
30606505--30606740	51	4.6	51	82	3	242	29	22	15	32	1.95
30610698--30610815	59	2.0	59	100	0	236	38	11	22	27	1.89
30613630--30613918	51	5.6	51	84	1	337	31	13	24	31	1.93
30615998--30616074	17	4.6	17	91	1	120	40	0	3	55	1.18
30615996--30616074	6	14.0	6	74	21	73	41	0	3	54	1.18
30616021--30616076	10	6.2	10	69	23	52	39	0	3	57	1.16
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30616108--30616149	20	2.2	20	86	4	59	38	30	14	16	1.89
30616432--30616464	16	2.1	17	88	11	52	39	24	12	24	1.89
30617461--30617784	30	10.9	29	75	8	222	34	22	2	39	1.69
30617476--30617784	119	2.6	119	80	7	306	34	22	2	40	1.68
30617470--30617784	60	5.3	58	75	7	258	34	22	2	40	1.68
30617850--30617890	21	2.1	19	86	13	57	21	9	0	68	1.18
30617849--30617895	21	2.2	21	78	17	53	23	8	0	68	1.17
30629646--30630608	39	24.7	39	67	6	376	24	31	19	24	1.98
30629646--30630609	78	12.3	78	81	3	850	24	31	19	24	1.98
30629646--30630612	156	6.2	156	81	3	947	24	31	19	24	1.98
30631097--30631164	6	12.0	6	72	17	56	41	0	5	52	1.25
30631116--30631164	23	2.2	22	92	3	80	38	0	8	53	1.31
30631098--30631166	17	4.2	16	72	16	61	39	0	5	55	1.24
30631125--30631166	10	3.9	10	85	14	57	40	0	4	54	1.21
30631198--30631238	20	2.1	19	86	4	55	36	34	14	14	1.87
30631524--30631556	16	2.1	16	88	11	50	39	24	12	24	1.89
30632645--30632865	29	7.6	29	79	8	191	38	26	1	33	1.65
30632683--30632870	58	3.2	57	83	6	227	37	28	1	32	1.65
30632645--30632870	87	2.6	87	81	6	226	38	26	1	33	1.65
30632933--30632978	22	2.2	20	88	11	67	19	8	2	69	1.25
30636927--30636989	32	2.0	32	83	0	81	19	17	15	47	1.83
30641122--30641166	20	2.2	20	80	0	54	42	8	6	42	1.62
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30641485--30641534	25	2.0	25	96	0	91	42	16	20	22	1.89
30644200--30644240	17	2.4	18	84	12	59	43	7	0	48	1.30
30645688--30645840	80	1.9	79	91	1	252	28	14	21	35	1.93
30647603--30647713	28	4.0	28	91	1	152	33	14	27	24	1.94
30659258--30659434	30	5.9	30	83	4	205	36	25	4	33	1.76
30659239--30659434	59	3.3	60	80	7	222	37	25	4	33	1.76
30659239--30659463	30	7.6	30	80	5	201	36	24	4	33	1.76
30662076--30662116	12	3.3	13	80	10	50	2	17	0	80	0.82
30662075--30662125	25	2.0	27	85	14	72	3	17	0	78	0.90
30681137--30681181	23	2.0	23	81	0	54	48	15	2	33	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135