genome.fa.s10.2.7.7.80.10.50.1000.42.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  42  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15553270--15553534	29	9.1	29	75	12	186	35	24	4	36	1.76
15555796--15555825	2	15.0	2	100	0	60	50	0	0	50	1.00
15557881--15558012	72	1.9	70	85	4	185	51	8	12	28	1.68
15562524--15562589	31	2.2	31	97	2	125	37	21	13	27	1.91
15562679--15562745	30	2.2	31	83	2	82	47	19	14	17	1.82
15562679--15562750	31	2.4	30	83	2	81	45	19	15	19	1.85
15565286--15565485	29	6.9	27	74	17	154	33	3	31	32	1.75
15565286--15565482	58	3.4	58	89	3	308	32	3	30	32	1.75
15565474--15565539	29	2.3	29	81	5	71	33	9	16	40	1.80
15566621--15566662	3	14.0	3	90	9	68	33	0	0	66	0.92
15567301--15567374	28	2.6	28	84	2	103	24	8	24	43	1.81
15567301--15567365	28	2.3	29	91	2	105	24	6	26	43	1.77
15567444--15567533	6	15.0	6	73	16	71	51	1	3	44	1.25
15567448--15567543	11	8.7	11	70	8	52	52	2	3	42	1.29
15567459--15567533	17	4.6	17	83	12	86	54	1	4	40	1.27
15567458--15567517	31	1.9	31	93	0	102	51	1	5	41	1.33
15567872--15568622	38	19.8	38	67	12	357	33	16	15	34	1.90
15567847--15568147	76	4.0	76	91	5	497	33	15	15	35	1.90
15567929--15568032	32	3.1	32	70	20	102	32	18	12	36	1.88
15567853--15568145	146	2.0	146	95	0	523	33	16	15	35	1.89
15568177--15568626	76	5.9	76	93	1	681	33	16	15	34	1.91
15580738--15581053	59	5.4	59	88	2	460	32	3	30	32	1.75
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15580773--15581043	29	9.3	28	70	21	200	33	2	30	32	1.72
15581046--15581112	29	2.3	28	77	7	71	32	7	19	40	1.79
15582205--15582259	16	3.5	16	92	2	85	36	0	3	60	1.15
15582197--15582246	3	17.0	3	88	12	77	32	0	2	66	1.03
15582884--15582957	28	2.6	28	85	6	105	24	6	24	44	1.77
15583027--15583116	6	15.0	6	75	16	80	52	1	3	43	1.25
15583042--15583116	17	4.6	17	83	12	86	54	1	4	40	1.27
15583032--15583106	31	2.5	29	87	8	114	52	1	4	42	1.28
15583030--15583108	37	2.1	38	86	6	108	53	1	3	41	1.27
15595862--15595887	8	3.2	8	100	0	52	11	0	34	53	1.37
15596863--15596917	28	2.0	28	85	3	67	54	14	9	21	1.68
15598976--15599007	3	10.7	3	100	0	64	0	65	0	34	0.93
15600865--15600989	59	2.1	59	82	2	153	32	11	30	26	1.91
15604821--15604858	14	2.7	14	91	0	58	21	5	34	39	1.76
15604818--15604859	21	2.0	21	90	0	66	19	4	38	38	1.73
15608202--15608405	105	1.9	107	92	2	349	35	17	15	30	1.91
15610543--15610580	4	10.0	4	88	11	62	0	26	0	73	0.83
15616492--15616655	65	2.5	64	75	7	152	32	14	24	29	1.94
15616614--15616687	36	2.1	36	89	5	114	32	12	22	32	1.91
15631571--15632036	228	2.0	229	86	2	650	24	17	18	39	1.91
15638985--15639025	19	2.2	19	95	0	73	43	4	7	43	1.53
15640932--15641441	253	2.0	253	99	0	1011	36	13	17	32	1.88
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15649729--15649763	5	7.0	5	93	0	61	57	0	2	40	1.14
15650023--15650057	17	2.0	17	88	5	52	62	0	0	37	0.95
15650692--15650732	19	2.1	19	86	4	55	29	4	9	56	1.53
15650883--15650923	21	2.0	21	90	9	66	34	4	2	58	1.32
15650891--15650931	21	2.0	21	90	0	64	34	4	2	58	1.32
15652630--15652705	34	2.2	34	85	0	107	31	19	0	48	1.49
15655488--15655530	21	2.0	22	86	4	61	20	30	18	30	1.97
15657337--15657375	20	2.0	20	89	0	60	38	10	2	48	1.51
15657342--15657384	20	2.2	20	83	8	52	37	11	2	48	1.52
15657347--15657388	22	2.0	20	86	9	57	38	14	0	47	1.44
15662047--15662071	3	8.3	3	100	0	50	68	0	32	0	0.90
15673285--15673411	57	2.2	57	95	1	229	37	14	25	22	1.93
15682428--15682470	22	2.0	22	86	9	61	51	13	9	25	1.71
15688290--15688346	30	1.9	30	88	0	87	15	12	12	59	1.61
15689497--15689523	2	13.5	2	100	0	54	48	0	0	51	1.00
15703729--15703772	20	2.2	20	84	8	54	54	2	2	40	1.25
15704731--15704755	13	1.9	13	100	0	50	48	4	0	48	1.20
15706854--15706905	27	2.0	26	81	7	61	53	1	9	34	1.45
15707048--15707083	18	1.9	19	88	5	56	66	2	13	16	1.36
15707097--15707183	29	3.0	29	80	6	88	54	5	3	36	1.42
15708070--15708104	17	2.1	17	100	0	70	22	37	5	34	1.78
15713419--15713466	25	1.9	25	95	0	87	43	4	0	52	1.20
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15713941--15713984	23	1.9	23	100	0	88	31	20	9	38	1.84
15722763--15722814	24	2.2	24	82	6	61	69	11	9	9	1.38
15723134--15723184	21	2.4	21	96	0	93	19	33	13	33	1.91
15724298--15724426	10	12.1	10	70	16	57	10	8	15	65	1.45
15724298--15724414	12	10.8	11	71	12	73	9	8	17	64	1.46
15724286--15724391	22	5.0	21	82	8	117	8	8	19	63	1.49
15724294--15724397	41	2.5	42	84	7	131	8	7	19	64	1.46
15724320--15724390	11	6.8	11	70	10	51	9	8	16	64	1.47
15724294--15724426	22	6.1	22	78	12	105	9	8	16	65	1.46
15724354--15724438	24	3.7	23	81	6	91	10	9	14	65	1.46
15726004--15726029	2	13.0	2	100	0	52	50	0	0	50	1.00
15729723--15729922	99	2.0	99	100	0	400	32	12	11	44	1.77
15733595--15733624	9	3.3	9	95	0	51	50	0	6	43	1.28
15735817--15735889	26	3.0	23	77	14	67	60	4	2	32	1.30
15735932--15735968	10	3.7	10	88	0	56	70	8	0	21	1.13
15736441--15736494	19	3.0	19	76	7	60	62	9	0	27	1.25
15736494--15736540	20	2.3	20	85	7	60	46	0	2	51	1.13
15745634--15745686	27	2.0	27	88	7	81	32	0	7	60	1.25
15749854--15749917	13	4.6	14	71	9	60	73	3	20	3	1.11
15749861--15749920	24	2.5	24	81	2	68	71	5	20	3	1.19
15751456--15751504	20	2.5	20	96	0	89	36	0	2	61	1.08
15756820--15756852	16	2.2	15	89	10	50	66	0	15	18	1.25
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15757035--15757067	16	2.1	16	88	5	50	6	21	0	72	1.05
15763970--15764003	17	2.0	17	100	0	68	29	17	29	23	1.97
15779008--15779063	29	2.0	28	82	3	67	41	0	5	53	1.24
15786055--15786137	40	2.1	40	95	0	148	34	8	15	40	1.78
15786761--15786801	16	2.7	16	85	7	50	60	0	2	36	1.10
15792337--15792402	31	2.2	30	84	7	82	46	6	4	42	1.48
15793682--15793748	33	2.1	33	88	2	100	23	4	23	47	1.70
15797311--15797344	16	2.1	16	94	0	59	44	23	23	8	1.81
15799789--15799902	52	2.2	52	87	3	158	26	17	21	35	1.95
15801197--15801251	3	18.7	3	88	3	76	0	25	0	74	0.82
15801195--15801248	18	3.1	18	91	2	92	0	24	0	75	0.80
15803454--15803790	29	11.5	30	67	22	148	36	2	26	33	1.71
15803449--15803819	59	6.3	59	88	4	538	36	2	27	33	1.71
15803860--15804230	161	2.3	162	86	4	529	40	14	19	25	1.89
15803910--15804223	161	2.0	160	93	1	538	42	13	18	26	1.87
15805633--15805707	17	4.4	16	83	9	78	52	4	1	42	1.28
15805626--15805693	6	11.7	6	74	16	63	52	2	0	44	1.16
15805633--15805707	34	2.2	34	83	9	91	52	4	1	42	1.28
15805657--15805714	28	2.0	29	83	9	75	55	3	1	39	1.27
15805982--15806395	38	11.2	37	66	19	154	31	19	15	32	1.93
15805982--15806393	76	5.6	74	86	5	497	31	19	15	33	1.93
15806237--15806355	31	3.7	31	71	14	98	29	21	15	34	1.93
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15806195--15806393	68	2.9	67	91	3	299	29	21	14	34	1.93
15818474--15818901	59	7.3	59	84	5	505	36	3	27	32	1.72
15818474--15818901	118	3.7	118	87	3	573	36	3	27	32	1.72
15818567--15818914	29	11.9	28	68	19	187	35	3	28	32	1.73
15818992--15819306	161	2.0	162	91	0	515	42	13	18	26	1.86
15820847--15820912	6	11.7	6	73	22	54	53	3	0	43	1.16
15820828--15820931	17	6.4	17	74	22	73	51	4	0	42	1.29
15821971--15822028	30	1.9	30	86	10	82	63	3	0	32	1.11
15824991--15825038	12	3.8	12	78	10	51	39	4	0	56	1.19
15825035--15825081	16	2.9	16	78	12	60	48	2	6	42	1.40

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135