genome.fa.s10.2.7.7.80.10.50.1000.89.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  89  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29942621--29943762	215	5.3	215	83	4	1316	40	14	17	27	1.88
29942621--29943762	431	2.7	426	82	4	1371	40	14	17	27	1.88
29943698--29943886	62	3.0	62	88	0	279	39	14	17	28	1.89
29943507--29944232	339	2.1	339	87	3	1050	41	14	17	27	1.88
29944058--29944213	62	2.5	62	88	2	233	41	17	17	24	1.90
29945348--29945386	13	2.9	14	80	7	53	66	0	28	5	1.12
29951775--29951853	22	3.4	22	77	8	68	69	1	22	6	1.18
29951819--29951874	30	1.9	30	86	13	82	64	3	26	5	1.32
29957224--29957369	62	2.4	62	91	0	229	41	16	17	25	1.89
29957246--29957865	278	2.2	278	87	1	895	39	14	17	28	1.89
29957586--29958296	216	3.3	216	82	2	851	39	14	17	28	1.89
29958315--29958789	216	2.2	215	85	1	619	38	15	17	28	1.90
29958729--29958913	62	3.0	62	91	3	291	40	17	15	27	1.89
29959064--29959218	62	2.5	62	86	0	193	41	16	17	25	1.89
29958529--29959468	339	2.8	339	87	2	1307	40	16	16	26	1.89
29959188--29959684	216	2.3	215	88	2	703	39	14	17	28	1.89
29961552--29962487	216	4.3	216	86	2	1256	28	16	14	39	1.88
29962423--29962549	62	2.0	62	87	3	184	30	15	14	38	1.88
29962207--29962749	278	2.0	278	86	1	775	29	16	13	39	1.88
29962485--29963699	216	5.7	216	85	3	1580	27	17	14	39	1.89
29962485--29963699	419	2.9	422	85	2	1596	27	17	14	39	1.89
29961561--29963384	913	2.0	916	87	2	2615	28	17	14	39	1.89
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
29978376--29978448	20	3.8	19	78	14	71	31	1	8	58	1.36
29978395--29978443	20	2.6	18	93	6	80	32	2	10	55	1.45
29983211--29983256	24	2.0	24	86	4	67	30	6	8	54	1.56
29983211--29983286	30	2.8	26	81	15	68	31	6	7	53	1.55
29989756--29989965	77	2.7	77	93	0	348	39	23	6	30	1.80
29994774--29994801	7	4.0	7	100	0	56	28	42	0	28	1.56
29994814--29994855	8	5.4	8	94	2	68	14	38	0	47	1.44
30004971--30005025	29	2.0	27	85	7	74	9	14	1	74	1.14
30006872--30007258	193	2.0	193	92	1	650	39	15	18	27	1.90
30019899--30019937	20	1.9	21	89	5	62	5	12	5	76	1.11
30026928--30027229	124	2.5	121	87	7	414	40	10	8	41	1.69
30027332--30027426	30	3.2	30	64	21	83	44	6	6	43	1.55
30027313--30027432	58	2.1	58	96	1	224	44	5	6	43	1.54
30027332--30027421	29	3.1	28	60	12	65	43	6	6	43	1.57
30030233--30030261	2	14.5	2	100	0	58	51	0	0	48	1.00
30042237--30042594	119	3.0	120	88	0	511	29	24	15	29	1.96
30045542--30045691	56	2.7	56	81	6	153	38	18	16	27	1.91
30045559--30045697	28	5.0	28	78	1	136	38	20	15	26	1.92
30045558--30045697	56	2.5	56	81	2	156	37	20	15	26	1.92
30045558--30045713	56	2.8	56	80	1	143	39	18	17	25	1.92
30045587--30045700	28	4.1	28	82	0	147	37	18	17	26	1.93
30049111--30049165	23	2.5	22	81	3	56	49	27	3	20	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30049458--30049512	23	2.5	22	81	3	56	49	27	3	20	1.65
30049000--30050027	347	3.0	347	99	0	2011	37	20	9	32	1.85
30049805--30049859	23	2.5	22	81	3	56	49	27	3	20	1.65
30051222--30051249	2	14.0	2	100	0	56	50	0	0	50	1.00
30052077--30052110	2	17.0	2	100	0	68	50	0	0	50	1.00
30062250--30062316	28	2.4	28	90	5	100	38	14	20	25	1.91
30063723--30063759	19	1.9	20	88	5	58	43	2	5	48	1.40
30069578--30069626	22	2.2	23	89	10	75	32	6	18	42	1.75
30074296--30074349	22	2.4	23	80	17	60	35	5	16	42	1.72
30085844--30085871	13	2.2	13	100	0	56	42	7	10	39	1.67
30086215--30086264	19	2.7	19	84	3	66	64	0	2	34	1.05
30086215--30086265	18	2.7	19	84	6	59	64	0	1	33	1.05
30086299--30086330	15	2.1	15	100	0	64	62	6	12	18	1.50
30087455--30087487	16	1.9	18	88	11	52	39	0	0	60	0.97
30089840--30089902	24	2.6	24	87	0	90	49	11	14	25	1.76
30091815--30091889	24	3.1	24	96	0	132	54	9	12	24	1.66
30092146--30092217	30	2.4	31	80	2	83	22	13	16	47	1.82
30092688--30092712	5	5.0	5	100	0	50	20	0	0	80	0.72
30098098--30098162	33	2.0	32	87	3	94	27	18	24	29	1.98
30098130--30098311	69	2.6	69	86	5	242	30	15	27	26	1.96
30115468--30115507	21	1.9	21	85	10	55	50	5	5	40	1.46
30115730--30115763	16	2.1	16	88	0	50	55	0	20	23	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30117675--30117991	42	7.5	42	86	3	343	36	9	24	29	1.86
30124668--30124714	24	2.0	24	87	8	69	27	14	8	48	1.73
30129318--30129384	17	3.9	17	80	0	71	20	20	11	46	1.82
30129336--30129390	17	3.2	17	75	10	58	20	20	12	47	1.82
30131286--30132524	310	4.0	310	93	0	2083	25	20	14	39	1.90
30136331--30136461	66	1.9	68	83	10	171	36	14	5	43	1.68
30136466--30136510	22	2.1	22	84	8	58	33	4	4	57	1.38
30136666--30136768	32	3.1	31	72	22	102	49	1	5	42	1.38
30138039--30138095	27	2.1	29	83	9	75	54	24	0	21	1.45
30138684--30138753	26	2.7	26	84	6	88	60	5	14	20	1.54
30150034--30150065	2	16.0	2	100	0	64	50	0	0	50	1.00
30154483--30154669	96	1.9	96	85	2	259	30	12	25	32	1.92
30156567--30156622	6	9.5	6	77	11	53	28	21	0	50	1.49
30156586--30156622	18	2.1	18	94	0	65	24	24	0	51	1.49
30165108--30165341	24	9.8	24	74	0	200	24	23	14	37	1.93
30165144--30165341	48	4.1	48	86	1	245	24	24	14	36	1.92
30165120--30165302	71	2.6	72	79	3	199	22	25	15	37	1.93
30165144--30165341	95	2.1	96	84	0	254	24	24	14	36	1.92
30165088--30165343	119	2.1	120	82	2	318	24	23	14	37	1.93
30178681--30178719	12	3.2	12	88	0	51	64	0	35	0	0.94
30187094--30187140	24	2.0	24	87	8	69	48	8	14	27	1.73
30190609--30190655	24	2.0	24	87	8	69	48	12	14	23	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30191971--30192023	18	2.9	18	77	0	61	39	24	15	20	1.91
30198605--30198646	17	2.4	17	84	11	50	14	14	11	59	1.61
30210633--30210687	27	2.0	29	86	13	80	52	18	7	21	1.69
30211079--30211184	48	2.2	48	86	5	144	38	26	8	26	1.85
30211154--30211207	28	1.9	28	92	0	90	42	25	9	22	1.83
30219021--30219078	9	6.4	9	76	5	55	32	1	22	43	1.64
30226346--30226420	24	3.1	24	92	0	123	54	8	12	25	1.64
30234433--30234481	26	1.9	25	84	12	64	44	2	4	48	1.33
30234594--30234638	20	2.3	19	81	7	54	24	8	4	62	1.43
30238986--30239128	64	2.2	64	96	0	259	20	8	30	41	1.82
30239656--30239686	3	10.7	3	93	6	55	32	0	0	67	0.91
30240387--30240445	27	2.1	27	81	6	64	35	20	25	18	1.95
30255869--30255928	24	2.5	24	88	0	93	50	8	15	26	1.72
30257797--30257863	24	2.8	25	90	6	111	55	2	13	28	1.53
30261966--30261993	14	2.0	14	100	0	56	50	14	7	28	1.69
30264191--30264248	20	2.9	19	78	16	64	53	0	1	44	1.10
30264197--30264248	22	2.5	22	82	14	67	51	0	0	48	1.00
30265036--30265088	22	2.5	22	85	8	76	50	0	0	49	1.00
30265010--30265085	32	2.5	29	86	14	109	47	0	0	52	1.00
30268542--30268571	10	3.0	10	95	0	51	23	0	56	20	1.42
30285561--30285591	15	2.1	15	100	0	62	67	0	25	6	1.14
30291160--30291187	7	4.0	7	100	0	56	14	0	42	42	1.45
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30292655--30292695	21	2.0	21	85	9	57	7	17	0	75	1.02
30293430--30293759	164	2.0	164	93	0	570	16	23	26	33	1.95
30311787--30311869	36	2.3	36	81	4	96	39	25	13	21	1.90
30317670--30317713	9	4.6	9	78	15	52	2	27	0	70	0.99
30317676--30317716	12	3.4	12	81	18	50	2	29	0	68	1.03
30326558--30326604	17	2.7	17	86	3	67	2	14	14	68	1.31
30326831--30326925	30	3.2	30	100	0	190	35	9	27	27	1.88
30328747--30328776	14	2.1	14	100	0	60	46	20	6	26	1.75
30331122--30331166	23	2.0	23	86	8	65	55	0	8	35	1.31
30334289--30334327	19	2.1	19	85	9	53	17	7	0	74	1.05

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135