genome.fa.s10.2.7.7.80.10.50.1000.99.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  99  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
33988596--33988630	17	2.1	18	89	10	56	48	0	8	42	1.33
33988922--33989036	61	1.9	61	83	0	149	35	6	15	42	1.72
33988914--33989047	61	2.2	61	77	2	146	33	5	15	45	1.69
33989499--33989543	24	1.9	24	86	13	67	51	6	4	37	1.49
33995133--33995173	20	2.0	20	100	0	82	24	24	24	26	2.00
33999397--33999434	8	4.8	8	100	0	76	39	0	21	39	1.53
33999405--33999453	16	3.3	15	86	8	57	42	0	12	44	1.41
33999397--33999442	24	1.9	24	90	0	74	41	0	17	41	1.49
34012516--34012577	22	2.9	21	76	7	70	51	1	0	46	1.10
34012542--34012612	28	2.6	27	80	10	72	47	1	2	47	1.25
34015764--34015810	22	2.2	21	84	3	58	70	2	8	19	1.24
34016625--34016667	19	2.3	19	84	8	52	58	4	0	37	1.19
34024517--34024568	21	2.5	21	78	6	61	26	13	26	32	1.94
34035641--34035710	21	3.3	21	77	0	68	42	11	25	20	1.85
34046795--34046845	21	2.4	21	80	6	59	54	11	3	29	1.54
34047502--34047555	15	3.3	15	74	18	54	46	0	0	53	1.00
34047517--34047553	19	1.9	19	88	0	56	51	0	0	48	1.00
34047729--34047776	13	3.7	13	81	10	62	64	2	2	31	1.16
34049055--34049094	10	4.2	9	81	12	53	35	2	0	62	1.09
34049018--34049094	29	2.7	28	84	11	86	40	2	0	57	1.13
34049051--34049103	20	2.7	19	82	8	61	33	1	1	62	1.17
34049661--34049705	6	7.5	6	92	0	54	42	11	0	46	1.39
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34053625--34053895	58	4.6	58	87	4	357	38	1	27	33	1.64
34053600--34053895	117	2.5	116	85	6	384	38	1	26	33	1.65
34053599--34053895	29	10.1	29	70	19	129	39	1	26	32	1.65
34055141--34055203	21	2.8	23	76	13	78	22	17	25	34	1.95
34055610--34055686	17	4.5	17	75	1	73	50	5	1	42	1.32
34055596--34055672	34	2.3	33	80	6	82	46	3	1	48	1.28
34056019--34056864	200	4.2	200	94	0	1424	18	23	21	35	1.96
34068997--34069148	30	5.2	30	72	17	131	40	1	25	32	1.67
34068997--34069222	30	7.7	29	72	14	126	39	1	26	32	1.67
34068993--34069230	59	4.1	59	82	8	279	37	1	28	32	1.67
34068992--34069230	117	2.0	118	84	5	315	37	1	28	32	1.67
34069936--34069970	17	2.1	17	88	0	52	31	25	14	28	1.95
34070214--34070247	10	3.4	10	87	0	50	41	0	0	58	0.98
34070485--34070545	21	2.7	23	75	14	74	21	16	26	36	1.94
34076901--34077016	58	2.1	54	82	9	135	47	17	0	34	1.54
34077307--34077438	70	1.9	71	85	3	185	15	7	15	60	1.56
34077298--34077450	71	2.1	70	78	8	166	16	8	14	60	1.57
34080489--34080513	8	3.1	8	100	0	50	36	0	16	48	1.46
34086823--34086977	78	1.9	79	92	5	258	38	16	20	25	1.92
34087716--34087758	22	2.1	21	87	12	63	51	0	0	48	1.00
34090148--34090205	13	4.2	13	86	8	80	70	0	27	1	0.97
34091976--34092001	12	2.2	12	100	0	52	73	15	0	11	1.11
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34092064--34092125	10	5.7	11	75	21	51	54	24	8	12	1.64
34092151--34092191	12	3.4	12	80	12	57	70	19	2	7	1.22
34092122--34092311	84	2.3	84	97	0	353	54	13	10	21	1.68
34092236--34092275	12	3.3	12	80	13	55	72	17	2	7	1.19
34094047--34094116	33	2.3	30	82	9	79	44	25	4	25	1.72
34094569--34094607	12	3.2	12	85	3	51	69	7	0	23	1.14
34097386--34097439	21	2.6	21	90	0	81	31	25	18	24	1.97
34097404--34097456	21	2.5	20	79	11	54	26	32	13	28	1.93
34104266--34104333	21	3.2	21	85	0	82	30	29	14	25	1.95
34115045--34115088	19	2.3	19	92	0	70	31	20	27	20	1.97
34115115--34115188	35	2.1	35	92	0	121	39	9	18	32	1.83
34118011--34118053	22	2.0	22	81	9	52	34	0	13	51	1.42
34131211--34131236	12	2.2	12	100	0	52	69	7	0	23	1.14
34131213--34131293	41	2.0	41	85	0	108	62	8	3	24	1.40
34131710--34131756	24	2.0	23	83	4	58	65	2	2	29	1.15
34134637--34134703	20	3.4	19	74	15	55	40	17	26	14	1.89
34134653--34134705	20	2.7	20	80	11	63	35	16	30	16	1.92
34155958--34156191	119	2.0	117	94	1	405	44	10	13	31	1.77
34160510--34160564	27	2.0	27	85	3	74	32	29	12	25	1.93
34160621--34160687	23	2.9	23	76	8	82	38	32	13	14	1.86
34164719--34164770	3	17.3	3	95	0	68	34	25	0	40	1.56
34164740--34164779	21	1.9	21	84	0	53	40	15	2	42	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34165198--34165555	52	7.2	52	66	17	177	41	3	8	46	1.52
34165074--34165621	149	3.7	149	88	3	782	41	3	9	45	1.53
34167233--34167271	21	2.0	20	85	10	53	25	7	33	33	1.84
34167414--34167450	11	3.4	11	88	0	56	5	8	5	81	0.99
34169124--34169171	3	16.3	3	95	4	89	31	0	0	68	0.90
34169955--34169990	18	1.9	19	88	5	56	13	11	41	33	1.80
34172053--34172089	18	2.1	18	94	0	65	35	18	5	40	1.74
34172438--34172475	12	3.1	12	88	11	51	47	2	5	44	1.39
34172845--34172892	22	2.2	22	78	10	55	25	22	0	52	1.48
34174030--34174071	15	2.6	17	81	7	52	45	9	0	45	1.36
34174106--34174160	17	3.4	17	82	7	62	40	3	7	49	1.48
34174326--34174358	18	1.9	17	88	11	50	45	0	0	54	0.99
34181468--34181494	6	4.5	6	100	0	54	37	18	29	14	1.91
34184132--34184177	24	2.0	23	83	12	58	21	0	17	60	1.35
34186608--34186751	33	4.3	34	70	11	98	25	25	25	22	2.00
34186545--34186814	102	2.6	102	86	0	387	26	24	24	24	2.00
34187204--34187575	132	2.8	134	91	2	606	40	16	4	38	1.70
34195326--34195382	26	2.2	26	81	6	62	28	5	1	64	1.25
34195353--34195398	22	2.1	22	83	0	56	26	4	2	67	1.21
34195305--34195395	37	2.6	32	78	16	83	24	4	2	69	1.18
34196375--34196439	26	2.5	26	82	2	69	20	7	10	61	1.53
34207275--34207325	17	3.0	17	81	13	52	49	17	15	17	1.81
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34207453--34207496	21	2.1	21	83	8	54	0	31	11	56	1.35
34211670--34211810	51	2.8	51	85	0	183	34	12	22	30	1.92
34213804--34214355	98	5.6	97	77	3	462	40	16	22	20	1.91
34213828--34214401	49	11.7	49	72	5	316	40	16	22	20	1.91
34213925--34214405	147	3.3	144	78	6	466	39	17	22	20	1.92
34216036--34216099	32	2.0	32	81	9	76	20	7	4	67	1.35
34219918--34219953	18	2.1	18	89	5	56	50	13	8	27	1.71
34226271--34226343	30	2.4	28	78	14	74	49	6	4	39	1.49
34227184--34227223	21	2.0	20	90	5	62	42	10	0	47	1.37
34247057--34247132	36	2.1	36	82	4	91	22	15	22	39	1.92
34266408--34266452	17	2.5	18	76	23	58	51	11	20	17	1.75
34273991--34274032	21	2.0	22	85	4	59	64	4	19	11	1.44
34275089--34275157	26	2.7	26	93	0	111	24	14	7	53	1.66
34275089--34275183	26	3.7	26	88	0	91	25	14	7	52	1.67
34276578--34276665	46	1.9	46	92	0	149	31	12	11	44	1.78
34277864--34277935	26	2.8	26	78	4	74	23	15	6	54	1.65
34278500--34278841	70	4.9	70	76	3	267	30	26	17	26	1.97
34278500--34278851	140	2.5	138	75	6	312	30	26	17	26	1.97
34278938--34279012	32	2.4	31	82	6	89	30	24	16	29	1.96
34279131--34279167	17	2.1	18	90	5	58	29	0	0	70	0.88
34279379--34279429	21	2.5	20	84	12	59	47	9	1	41	1.48
34282358--34282393	11	3.3	11	96	0	63	58	13	27	0	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
34288926--34288966	22	1.9	21	85	5	55	19	7	7	65	1.41
34290353--34290411	29	2.0	29	100	0	118	37	16	13	32	1.88
34290692--34290724	10	3.3	10	84	16	50	9	0	3	87	0.63
34290691--34290742	20	2.6	20	84	0	68	17	1	1	78	0.93
34314201--34314367	85	2.0	85	81	7	196	34	16	25	23	1.95
34321317--34321346	2	15.0	2	92	0	51	46	0	53	0	1.00
34324148--34324184	13	2.8	13	87	4	56	64	0	0	35	0.94
34324982--34325006	6	4.2	6	100	0	50	52	0	0	48	1.00
34325872--34325946	24	3.1	24	90	0	114	57	6	13	22	1.59
34327869--34327943	24	3.1	24	86	3	107	57	9	10	22	1.61

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135