genome.fa.s10.2.7.7.80.10.50.1000.123.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  123  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40712659--40712929	30	9.2	30	62	22	92	36	26	1	35	1.66
40712659--40712974	59	5.4	59	85	5	408	34	26	2	36	1.69
40712956--40713014	27	2.1	27	87	9	84	32	30	11	25	1.92
40717210--40717384	61	2.9	59	82	4	208	36	3	28	31	1.74
40719338--40719388	6	8.3	6	75	12	50	52	0	3	43	1.19
40719341--40719410	27	2.4	29	83	9	81	55	1	2	40	1.23
40721034--40721079	17	2.7	17	78	18	51	67	2	0	30	1.03
40721362--40721483	63	1.9	63	89	0	190	28	8	10	52	1.65
40724103--40724135	17	2.0	17	88	5	50	69	0	0	30	0.88
40728467--40728700	30	7.8	30	79	9	196	36	26	4	32	1.77
40728651--40728747	29	3.4	29	81	2	108	32	26	7	32	1.84
40729206--40729349	30	4.7	31	77	16	108	34	23	5	36	1.78
40729205--40729320	60	1.9	62	82	7	148	34	22	6	37	1.79
40729307--40729393	29	3.0	29	81	0	93	33	27	6	32	1.83
40729308--40729404	29	3.4	29	80	2	90	32	25	7	34	1.83
40728546--40729864	657	2.0	657	99	0	2620	29	19	8	42	1.81
40743996--40744662	209	3.2	208	88	2	996	38	17	21	22	1.93
40744562--40744743	75	2.4	74	79	4	193	36	19	21	21	1.95
40746842--40747143	30	10.2	30	74	11	180	35	25	5	33	1.80
40746842--40747098	60	4.3	60	77	9	224	35	24	6	33	1.81
40746841--40747075	90	2.6	90	80	8	250	34	24	6	33	1.82
40747118--40747195	29	2.6	30	72	10	70	30	19	5	44	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40747175--40747247	29	2.5	29	76	12	78	24	19	8	47	1.76
40750365--40750425	30	2.0	30	84	9	79	54	6	16	22	1.65
40750604--40750925	60	5.3	60	82	3	396	35	4	22	37	1.73
40750607--40750925	30	10.6	30	81	6	315	35	4	22	37	1.74
40752769--40752830	11	5.5	11	73	9	54	56	0	0	43	0.99
40752769--40752837	6	12.2	6	77	11	74	57	0	0	42	0.98
40752743--40752837	27	3.7	26	76	19	83	51	1	1	46	1.15
40752772--40752838	17	4.0	17	78	3	82	59	0	0	40	0.97
40752772--40752837	33	2.0	33	84	0	87	59	0	0	40	0.98
40759759--40759802	18	2.4	18	81	14	54	27	2	20	50	1.60
40763984--40764008	6	4.2	6	100	0	50	16	68	0	16	1.22
40767608--40767693	41	2.2	39	82	16	97	22	3	4	69	1.22
40769422--40769479	23	2.5	23	91	0	89	24	27	25	22	2.00
40776221--40776334	34	3.2	34	68	20	106	44	15	16	22	1.86
40776210--40776355	73	2.0	73	98	0	283	43	15	15	24	1.86
40776356--40776430	24	3.1	24	84	3	114	13	10	29	46	1.76
40781762--40781789	10	2.8	10	100	0	56	0	0	57	42	0.99
40788984--40789018	18	1.9	18	94	0	61	62	5	2	28	1.32
40790409--40790450	22	1.9	22	85	0	57	61	7	7	23	1.47
40793149--40793208	30	1.9	32	83	10	79	36	10	6	46	1.64
40795430--40795479	23	2.2	23	100	0	100	30	12	8	50	1.68
40796258--40796372	58	2.0	58	89	3	178	45	0	1	53	1.10
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40796258--40796393	57	2.4	57	85	6	177	45	0	1	52	1.15
40796551--40796586	16	2.3	15	90	4	54	33	27	0	38	1.57
40801226--40801254	7	4.1	7	100	0	58	27	13	58	0	1.36
40802211--40802278	30	2.3	31	82	7	79	47	8	8	35	1.66
40813058--40813154	44	2.2	44	90	1	149	54	12	19	13	1.70
40813778--40813922	30	4.9	30	78	8	154	35	31	3	30	1.74
40813778--40813985	29	7.1	29	76	11	174	36	29	2	31	1.70
40813778--40813922	59	2.5	59	94	2	247	35	31	3	30	1.74
40815270--40815376	53	2.0	53	94	0	187	39	36	13	11	1.80
40817318--40817367	25	2.0	25	84	7	66	48	2	0	50	1.12
40820452--40820527	29	2.6	29	85	2	89	59	1	0	39	1.06
40820493--40820533	21	1.9	22	85	5	57	60	2	0	36	1.10
40821955--40822011	30	1.9	30	85	0	78	14	33	29	22	1.93
40823192--40823243	27	1.9	27	84	0	68	59	1	1	36	1.19
40823192--40823243	9	5.8	9	77	6	52	59	1	1	36	1.19
40826732--40826761	6	4.8	6	95	4	51	83	3	13	0	0.77
40832928--40832953	12	2.2	12	100	0	52	19	23	15	42	1.89
40834764--40834826	34	1.9	33	84	12	85	30	3	3	63	1.25
40836755--40836801	3	15.7	3	90	0	76	29	34	4	31	1.77
40837776--40837814	20	2.0	20	84	0	51	51	5	12	30	1.62
40839743--40839788	17	2.8	16	83	9	56	78	8	8	4	1.09
40840729--40840931	30	6.8	30	72	15	111	35	23	1	38	1.66
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40840763--40840941	59	3.0	57	76	8	160	35	24	1	38	1.65
40844880--40844923	22	2.0	22	86	8	63	75	0	25	0	0.81
40845773--40845851	7	11.3	7	79	15	76	83	0	16	0	0.65
40845759--40845835	17	4.8	16	82	7	93	84	0	11	3	0.75
40845778--40845851	24	3.0	24	83	13	98	83	0	16	0	0.64
40845773--40845851	31	2.7	27	78	19	88	83	0	16	0	0.65
40845759--40845851	48	1.9	49	84	6	127	82	0	13	3	0.78
40845759--40845851	17	5.6	17	79	12	86	82	0	13	3	0.78
40845759--40845837	1	79.0	1	69	0	50	84	0	11	3	0.74
40846925--40847060	48	2.8	48	78	2	128	33	16	30	19	1.95
40846796--40847587	99	8.0	100	75	5	538	33	17	30	18	1.94
40846815--40847567	147	5.1	148	74	8	421	33	17	30	18	1.94
40846796--40847587	50	16.1	50	76	5	536	33	17	30	18	1.94
40847821--40847903	41	2.0	41	92	0	139	32	13	20	33	1.91
40847945--40848485	78	7.0	78	77	5	450	24	29	19	26	1.98
40847945--40848421	156	3.1	156	84	2	575	24	29	18	27	1.98
40847937--40848388	39	11.6	39	67	10	156	24	30	18	26	1.98
40847964--40848486	155	3.4	155	81	4	545	24	29	19	26	1.98
40849583--40849618	2	18.5	2	88	5	56	52	0	2	44	1.15
40850703--40850771	3	23.0	3	96	0	129	65	0	0	34	0.93
40852306--40852339	15	2.3	15	94	0	59	23	11	38	26	1.89
40852315--40852349	15	2.3	15	90	0	52	20	11	42	25	1.85
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40853168--40853555	49	7.9	49	70	12	219	17	23	20	38	1.93
40853026--40853555	98	5.4	98	83	1	562	17	23	19	39	1.92
40853016--40853555	196	2.8	196	81	1	627	17	23	19	39	1.92
40853980--40854016	18	2.1	18	89	0	56	59	10	8	21	1.56
40864919--40864948	3	10.0	3	100	0	60	66	0	0	33	0.92
40867439--40867708	30	9.1	30	78	9	216	32	26	3	36	1.74
40871806--40871843	19	2.0	19	94	0	67	50	0	7	42	1.31
40871935--40871980	24	1.9	24	86	0	65	45	0	2	52	1.13
40881821--40881911	42	2.1	44	82	11	118	34	1	15	49	1.52
40882082--40882119	18	2.1	18	90	9	60	26	10	13	50	1.73
40885010--40885056	24	1.9	25	87	12	71	57	6	4	31	1.43
40887050--40887110	5	10.8	5	85	13	59	73	1	4	19	1.10
40887051--40887110	6	10.3	6	85	3	61	75	1	5	18	1.07
40891079--40891125	24	1.9	25	83	12	62	55	6	4	34	1.45
40894341--40894400	28	2.1	29	81	12	70	21	1	6	70	1.20
40896223--40896281	14	4.5	13	72	19	50	72	6	0	20	1.06
40896197--40896374	100	1.8	97	82	9	229	64	6	6	22	1.42
40896297--40896338	15	2.8	15	82	10	50	73	4	2	19	1.12
40899516--40899650	29	4.6	29	80	5	139	35	2	24	37	1.71
40899516--40899652	59	2.3	58	85	5	177	35	2	24	37	1.70
40899501--40899651	29	5.1	29	77	7	117	37	3	23	35	1.74
40901460--40901999	42	13.4	42	78	8	450	25	18	26	29	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40902217--40902755	49	11.0	49	75	3	429	20	29	15	34	1.94
40902226--40902751	98	5.4	98	85	0	676	19	29	16	34	1.94
40902226--40902751	197	2.7	196	85	0	721	19	29	16	34	1.94
40904078--40904128	24	2.1	24	85	0	66	31	17	21	29	1.96
40906261--40906475	112	1.9	115	90	2	346	37	12	20	29	1.89
40906797--40906852	10	5.6	10	81	12	62	1	19	0	78	0.84
40906791--40906861	30	2.4	29	85	2	88	4	18	0	77	0.93
40906804--40906860	10	5.9	9	80	13	60	1	19	0	78	0.83
40907712--40907753	15	2.9	15	83	13	52	0	21	0	78	0.75
40907727--40907765	5	7.6	5	88	5	60	0	17	0	82	0.68

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135