genome.fa.s10.2.7.7.80.10.50.1000.60.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  60  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20306115--20306337	111	2.0	111	84	2	295	39	13	20	27	1.90
20307380--20307443	17	3.6	17	82	15	67	0	20	0	79	0.73
20307380--20307434	8	6.8	8	78	17	60	0	21	0	78	0.76
20307380--20307446	11	6.3	10	81	8	71	0	19	0	80	0.71
20307380--20307447	22	3.1	21	83	10	84	0	19	0	80	0.70
20307396--20307445	5	9.8	5	85	10	66	0	18	0	82	0.68
20312750--20312967	30	7.6	30	74	17	160	37	26	0	35	1.63
20312808--20312845	19	2.0	19	94	0	67	42	23	0	34	1.55
20312750--20312904	79	2.0	79	81	2	186	38	25	0	35	1.61
20319152--20319422	41	6.5	41	86	3	310	37	10	25	26	1.89
20319151--20319422	124	2.2	127	86	4	381	37	10	25	26	1.88
20319960--20320036	21	3.5	21	66	10	55	27	11	23	37	1.89
20326455--20326577	39	3.2	39	80	4	149	26	28	17	26	1.98
20326631--20327002	171	2.2	171	89	0	564	38	16	22	22	1.92
20326804--20327368	208	2.7	208	86	3	735	37	17	21	23	1.94
20329346--20329489	30	4.7	30	78	12	107	35	21	3	39	1.70
20329346--20329489	61	2.4	59	76	13	141	35	21	3	39	1.70
20329489--20329574	30	2.9	30	85	0	109	36	31	2	30	1.70
20333926--20333993	29	2.3	30	85	10	86	25	5	7	61	1.45
20340416--20340461	18	2.5	19	77	22	62	56	0	2	41	1.11
20341013--20341050	14	2.5	15	83	12	51	71	5	0	23	1.07
20341185--20341269	31	2.7	31	88	0	116	38	9	3	48	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20343190--20343285	48	2.0	48	88	6	142	15	36	10	37	1.82
20348852--20348906	24	2.3	24	75	12	60	7	20	1	70	1.20
20349318--20349933	198	3.1	198	85	4	814	40	10	15	33	1.81
20365811--20365879	18	3.8	18	84	0	84	23	21	21	33	1.97
20365848--20365888	18	2.3	18	86	0	55	29	24	24	21	1.99
20366616--20366690	21	3.6	21	75	7	71	30	14	24	30	1.95
20369285--20369350	26	2.6	25	80	7	69	60	1	9	28	1.36
20370405--20370717	43	7.3	43	84	1	340	29	25	17	26	1.98
20370405--20370717	86	3.6	86	85	1	376	29	25	17	26	1.98
20373877--20373954	40	1.9	41	92	2	131	23	25	15	35	1.94
20373870--20373974	41	2.6	40	84	1	138	21	27	15	35	1.94
20375360--20375469	56	1.9	57	82	8	136	44	7	11	36	1.69
20376639--20376852	41	5.2	41	79	5	182	22	25	15	36	1.94
20377329--20377361	15	2.2	15	94	0	57	48	27	0	24	1.51
20377595--20377634	21	1.9	21	100	0	80	0	45	20	35	1.51
20383399--20383436	20	1.9	20	88	0	58	60	2	0	36	1.11
20383423--20383509	26	3.2	26	74	17	95	45	0	5	48	1.26
20383309--20383597	102	2.7	104	84	6	352	46	2	6	45	1.40
20383307--20383623	50	5.9	55	72	17	238	45	1	5	46	1.38
20383530--20383617	26	3.2	25	72	20	70	42	1	5	51	1.33
20383530--20383609	30	2.8	28	73	17	76	41	1	6	51	1.35
20383316--20383631	102	3.0	102	81	6	325	44	1	6	47	1.37
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20383551--20383690	72	1.9	72	80	8	160	47	2	2	47	1.32
20386294--20386486	42	4.7	41	82	2	206	20	29	19	30	1.97
20386262--20386486	83	2.7	84	80	4	251	20	28	19	31	1.97
20388423--20388701	41	6.9	41	83	3	296	20	29	20	29	1.98
20388423--20388660	121	2.0	121	85	2	325	21	30	21	27	1.98
20395079--20395122	22	2.1	20	80	12	52	6	13	4	75	1.17
20402934--20402982	18	2.7	17	78	12	53	67	6	4	22	1.30
20403162--20403408	30	8.2	29	82	6	206	36	4	22	36	1.74
20403234--20403408	89	2.0	89	86	1	242	37	5	21	36	1.76
20404589--20404640	4	12.5	4	80	11	52	65	0	1	32	1.04
20404595--20404640	13	3.5	13	82	8	58	65	0	2	32	1.05
20405263--20405339	28	2.8	28	87	0	100	24	24	22	28	1.99
20405263--20405351	28	3.2	28	86	0	88	26	22	20	30	1.98
20406078--20406108	14	2.3	13	94	5	53	25	3	22	48	1.66
20406962--20406999	18	2.1	18	90	5	58	42	0	0	57	0.98
20409566--20409854	36	8.0	36	70	15	141	26	8	14	49	1.72
20409581--20409837	36	7.2	35	74	8	151	26	7	14	50	1.70
20409566--20409852	73	4.0	71	76	9	222	27	8	14	50	1.71
20410224--20410438	60	3.6	58	77	7	196	27	16	16	40	1.89
20410281--20410397	62	1.9	62	85	3	164	27	17	16	39	1.90
20411227--20411298	30	2.4	29	82	11	83	58	1	9	30	1.39
20411251--20411333	30	2.8	30	84	0	103	59	3	8	28	1.44
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20411859--20412102	59	4.1	59	81	7	217	40	15	16	27	1.89
20412059--20412182	55	2.2	57	80	11	141	38	16	16	29	1.90
20412817--20412864	7	6.7	7	79	13	53	66	2	0	31	1.03
20412817--20412860	22	2.1	20	91	8	70	65	2	0	31	1.05
20412820--20412864	15	3.2	13	87	9	54	68	2	0	28	1.01
20417925--20417949	13	1.9	13	100	0	50	76	0	0	24	0.80
20419890--20419950	32	1.9	31	83	3	77	44	6	8	40	1.60
20427116--20427190	31	2.4	30	84	8	89	24	20	10	45	1.82
20427823--20427920	28	3.4	29	72	8	76	38	24	15	21	1.92
20427821--20427892	29	2.5	28	73	8	74	36	23	16	23	1.94
20432610--20433055	221	2.0	221	97	0	847	29	33	9	27	1.88
20440149--20440195	16	2.9	16	72	15	51	68	0	0	31	0.90
20441463--20441521	29	2.0	30	90	3	93	30	6	13	49	1.68
20441705--20441774	31	2.3	30	80	4	79	38	10	12	38	1.77
20442969--20443009	6	7.2	6	84	15	52	36	0	0	63	0.95
20442968--20443007	16	2.3	18	80	20	50	37	0	0	62	0.95
20451394--20451427	18	1.9	18	88	5	52	64	5	0	29	1.17
20452500--20452559	31	1.9	31	93	0	102	45	11	6	36	1.67
20455164--20455222	29	2.0	29	86	0	82	22	11	8	57	1.61
20455175--20455338	61	2.7	60	75	7	179	25	17	12	45	1.82
20455492--20455679	90	2.1	88	83	9	229	45	14	15	24	1.83
20455569--20455679	31	3.7	31	71	21	92	45	13	15	26	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20455821--20455883	33	1.9	33	86	0	90	42	4	7	44	1.54
20456018--20456076	29	2.0	29	86	3	82	54	8	1	35	1.41
20456018--20456098	31	2.7	30	82	5	92	51	7	2	38	1.43
20462071--20462146	21	3.6	21	75	5	64	31	15	23	28	1.96
20466839--20466881	22	1.9	23	90	4	70	39	27	13	18	1.89
20468329--20468401	9	8.6	8	75	19	60	79	4	1	15	0.95
20468345--20468385	20	2.0	21	90	9	66	75	2	2	19	1.03
20468333--20468401	15	4.6	14	82	8	75	79	4	1	14	0.95
20468376--20468458	29	3.0	27	76	11	69	71	3	8	16	1.26
20468391--20468430	21	1.9	21	89	0	62	72	0	10	17	1.11
20468474--20468555	27	2.8	30	67	10	80	60	7	7	24	1.48
20469441--20469473	13	2.5	13	86	13	50	6	15	0	78	0.93
20469441--20469473	14	2.4	14	85	5	50	6	15	0	78	0.93
20469931--20469995	34	1.9	34	90	6	105	26	7	1	64	1.29
20472077--20472624	59	9.3	59	89	1	791	33	5	29	31	1.80
20472192--20472595	30	13.7	29	70	18	237	34	4	29	31	1.79
20472140--20472595	237	1.9	233	93	1	777	34	5	28	31	1.80
20472517--20472653	30	4.6	29	69	21	79	36	2	27	33	1.72
20472747--20473064	161	2.0	163	93	3	554	46	13	14	24	1.82
20473839--20473873	10	3.5	10	96	0	61	45	0	0	54	0.99
20474325--20474363	20	2.0	20	89	0	60	17	17	48	15	1.81
20474406--20474458	14	3.9	14	80	9	65	16	18	30	33	1.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
20474481--20474582	6	17.0	6	74	15	86	48	1	0	49	1.19
20474508--20474589	17	5.1	16	73	15	71	52	3	1	42	1.26
20474506--20474582	25	3.3	22	82	12	100	53	2	1	42	1.23
20474505--20474573	31	2.3	30	87	9	97	50	2	1	44	1.25
20474540--20474592	11	4.8	11	79	9	63	56	3	0	39	1.17
20474915--20475702	68	11.6	68	95	1	1375	25	21	18	34	1.96
20476382--20476478	1	97.0	1	75	0	86	0	3	9	87	0.64
20476381--20476477	6	16.0	6	86	10	117	0	3	10	86	0.67
20485965--20486747	67	11.6	68	92	4	1293	25	20	18	34	1.96
20485965--20486747	267	2.9	272	92	4	1300	25	20	18	34	1.96

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135