genome.fa.s10.2.7.7.80.10.50.1000.15.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  15  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6672637--6672719	42	1.9	44	85	4	116	43	10	4	40	1.61
6680258--6680350	39	2.3	39	80	10	107	37	0	8	53	1.32
6681487--6681521	6	5.8	6	89	0	52	54	2	42	0	1.15
6696886--6696911	3	8.7	3	100	0	52	69	0	30	0	0.89
6698120--6698153	3	11.3	3	100	0	68	67	0	0	32	0.91
6698429--6698469	2	20.5	2	100	0	82	48	0	0	51	1.00
6706251--6706311	29	2.1	29	96	0	113	22	24	19	32	1.97
6719210--6719257	24	2.0	25	83	4	62	70	2	12	14	1.25
6719840--6719884	8	5.2	8	84	10	54	60	0	0	40	0.97
6719840--6719939	16	5.8	18	68	17	52	57	1	3	39	1.21
6721286--6721364	39	2.1	38	83	9	99	45	3	5	45	1.43
6728579--6728605	12	2.2	12	100	0	54	25	33	7	33	1.84
6741283--6741347	21	3.1	21	73	8	60	40	16	20	23	1.92
6743187--6743229	4	10.8	4	100	0	86	51	23	0	25	1.49
6747025--6747068	20	2.1	21	95	4	81	65	4	0	29	1.12
6747075--6747104	16	1.9	15	93	6	51	33	0	0	66	0.92
6750043--6750082	22	1.9	22	90	10	66	22	7	7	62	1.47
6758434--6758595	61	2.8	59	81	5	170	50	16	7	25	1.71
6758560--6758598	21	1.9	20	89	5	60	58	15	5	20	1.55
6768996--6769056	23	2.6	24	94	2	106	45	26	8	19	1.78
6774789--6774813	4	6.2	4	100	0	50	76	0	24	0	0.80
6776013--6776061	18	2.7	18	81	6	55	65	6	10	18	1.43
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6784885--6784929	15	2.9	16	80	12	58	51	0	11	37	1.38
6786283--6786345	24	2.6	24	79	0	81	23	11	11	53	1.68
6788270--6788332	24	2.6	24	84	0	90	23	12	11	52	1.71
6799913--6799938	2	13.0	2	100	0	52	50	0	0	50	1.00
6801545--6801571	2	13.5	2	100	0	54	48	0	0	51	1.00
6809263--6809325	25	2.6	23	75	22	58	38	7	1	52	1.40
6811316--6811345	13	2.3	13	94	0	51	50	16	0	33	1.46
6811303--6811457	56	2.8	56	84	2	179	45	13	4	36	1.64
6811456--6811529	33	2.2	33	85	4	96	51	13	4	31	1.60
6814807--6814849	11	3.8	11	80	17	52	65	0	2	32	1.06
6820573--6820613	6	6.8	6	97	0	64	17	9	56	17	1.67
6822153--6822188	19	2.0	18	89	10	56	33	0	2	63	1.08
6823239--6823281	23	1.9	23	90	4	70	67	0	13	18	1.23
6824131--6824183	18	3.1	18	86	10	67	54	0	0	45	0.99
6824226--6824271	18	2.6	17	89	6	65	39	0	2	58	1.10
6824496--6824551	28	2.0	27	89	3	85	55	12	5	26	1.58
6827260--6827289	2	15.5	2	93	6	53	50	0	0	50	1.00
6827724--6827761	6	6.3	6	100	0	76	50	15	0	34	1.45
6834404--6834468	20	3.3	19	81	12	69	23	7	1	67	1.25
6834423--6834488	30	2.2	30	78	10	73	22	7	4	65	1.37
6834458--6834534	37	2.1	36	80	9	84	25	10	7	55	1.60
6834727--6834770	20	2.2	20	84	4	54	54	0	11	34	1.36
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6834746--6834794	25	2.0	24	84	4	62	53	2	6	38	1.38
6835553--6835598	23	2.0	23	83	8	58	32	4	10	52	1.56
6841284--6841324	20	2.0	21	85	4	57	48	0	0	51	1.00
6841342--6841380	20	2.0	20	85	5	53	48	5	2	43	1.38
6841372--6841428	23	2.5	23	77	5	71	52	0	5	42	1.24
6853416--6853504	23	3.8	23	82	10	101	32	12	15	39	1.85
6853405--6853479	12	6.2	12	69	10	55	29	14	13	42	1.84
6861139--6861198	31	1.9	31	86	0	84	35	6	3	55	1.43
6861541--6861719	95	1.9	96	97	1	342	43	7	6	42	1.58
6862309--6862348	20	2.0	21	90	5	64	60	0	5	35	1.19
6862349--6862493	23	6.8	21	69	20	79	59	1	3	35	1.23
6862343--6862493	21	7.2	19	69	20	63	60	1	3	35	1.22
6862354--6862482	9	13.6	9	65	19	50	59	0	3	36	1.18
6862543--6862589	22	2.1	23	92	7	80	68	0	8	23	1.17
6862342--6862684	105	3.2	106	91	4	543	57	1	3	37	1.27
6863255--6863332	28	2.8	28	79	14	81	41	0	1	57	1.07
6869090--6869160	30	2.3	31	80	9	83	45	5	2	46	1.41
6869161--6869185	9	2.8	9	100	0	50	56	0	0	44	0.99
6877173--6877198	7	3.7	7	100	0	52	26	0	0	73	0.84
6877785--6877828	16	2.8	16	77	16	56	40	0	0	59	0.98
6878463--6878492	15	2.0	15	93	0	51	30	0	0	70	0.88
6887575--6887636	27	2.3	27	100	0	124	6	17	40	35	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6892378--6892627	60	4.2	59	79	6	256	30	20	14	34	1.93
6892378--6892627	59	4.2	62	78	11	238	30	20	14	34	1.93
6892378--6892635	57	4.3	61	77	10	232	30	20	14	34	1.93
6892897--6893100	102	2.0	102	97	0	381	33	13	18	34	1.90
6895932--6895988	30	1.9	30	100	0	114	28	7	29	35	1.83
6897201--6897298	23	4.2	23	83	7	126	13	22	23	40	1.89
6897302--6897391	23	3.9	23	75	17	87	11	24	18	45	1.82
6897242--6897362	64	1.9	64	84	6	165	10	23	22	43	1.84
6898389--6898463	23	3.2	24	85	10	84	10	24	22	42	1.85
6899719--6900188	62	7.8	61	78	7	489	31	15	21	31	1.94
6899719--6900186	117	3.9	117	80	6	481	32	15	21	30	1.94
6899719--6900186	179	2.6	179	81	8	515	32	15	21	30	1.94
6899720--6900153	241	1.8	241	87	4	660	32	15	21	30	1.95
6902360--6902401	18	2.4	17	78	17	50	47	0	2	50	1.14
6903390--6903442	23	2.3	23	83	6	63	41	3	9	45	1.54
6937875--6937990	46	2.5	46	87	2	162	13	21	22	42	1.88
6937875--6937990	23	5.0	23	82	2	135	13	21	22	42	1.88
6937896--6938043	69	2.1	68	81	7	174	13	22	21	42	1.88
6941543--6941600	21	2.6	22	78	10	55	1	29	5	63	1.25
6941558--6941601	21	2.1	20	84	12	61	0	25	4	70	1.06
6941580--6941613	15	2.3	15	89	0	50	2	23	2	70	1.15
6944089--6944128	21	2.0	20	90	5	62	57	0	25	17	1.40
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6950714--6950754	15	2.9	14	85	7	64	48	19	7	24	1.74
6950878--6950921	19	2.3	19	80	7	54	72	4	0	22	1.02
6952641--6952728	11	7.7	11	78	12	61	31	3	1	63	1.18
6952652--6952728	11	6.6	11	78	11	82	32	1	1	64	1.09
6952660--6952725	3	23.3	3	73	17	61	33	0	1	65	1.02
6952663--6952745	22	3.6	22	71	14	69	34	0	2	62	1.08
6954740--6954807	29	2.2	32	75	12	72	54	2	0	42	1.15
6954763--6954815	22	2.3	23	84	9	65	52	0	1	45	1.11
6960725--6960769	18	2.5	19	73	23	51	17	44	11	26	1.82
6961680--6961725	24	1.9	24	82	8	58	2	47	4	45	1.34
6961791--6961825	12	2.6	14	86	13	56	8	5	17	68	1.35
6962919--6962954	18	1.9	19	88	5	56	47	0	5	47	1.25
6974136--6974167	15	2.1	16	94	5	57	37	12	12	37	1.81
6976732--6976765	17	2.1	17	88	5	52	20	14	41	23	1.89
6978606--6978644	19	2.0	21	85	10	55	35	0	5	58	1.20
6979470--6979506	18	2.0	19	89	5	58	0	21	0	78	0.75
6980995--6981046	7	7.6	7	83	16	65	82	0	15	1	0.75
6980995--6981046	8	6.4	8	74	12	52	82	0	15	1	0.75
6980996--6981043	16	2.9	15	85	14	60	81	0	16	2	0.79
6981856--6981893	20	1.9	20	100	0	76	31	15	15	36	1.90
6986123--6987235	370	3.0	371	97	1	2063	38	9	8	43	1.69
6988650--6988902	84	3.0	81	77	7	251	49	11	5	34	1.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
6988806--6988861	29	2.0	29	85	3	78	50	14	1	33	1.53
6988792--6988863	28	2.5	27	78	13	72	52	12	1	33	1.48
6991360--6991396	4	9.2	4	93	0	65	78	0	21	0	0.75
6993189--6993231	16	2.7	15	82	10	59	44	0	2	53	1.13
6993176--6993228	19	2.8	18	86	8	70	49	0	1	49	1.12
6994032--6994695	162	4.1	162	95	0	1159	25	17	12	44	1.84
6994769--6994960	29	6.5	31	69	22	128	32	29	3	34	1.73
6994769--6994990	119	1.9	119	89	2	347	32	29	2	35	1.72
6994769--6994997	60	3.9	58	85	6	307	31	30	3	34	1.75
6994973--6995046	38	1.9	38	88	0	112	28	25	8	37	1.84

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135