genome.fa.s10.2.7.7.80.10.50.1000.127.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  127  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41492912--41493128	29	7.5	30	68	10	146	33	25	4	37	1.75
41492912--41493128	59	3.8	58	83	3	260	33	25	4	37	1.75
41497501--41497551	3	17.0	3	100	0	102	66	0	0	33	0.92
41497924--41497966	11	3.8	11	80	17	52	32	2	0	65	1.06
41500381--41500414	17	1.9	18	88	5	52	76	8	5	8	1.15
41503043--41503138	17	5.5	17	82	3	111	37	4	2	56	1.30
41503048--41503129	6	14.2	6	70	7	53	39	3	2	54	1.31
41503918--41503960	16	2.6	16	85	7	50	48	9	4	37	1.56
41503948--41503992	19	2.4	19	84	0	54	60	0	4	35	1.17
41505090--41505487	59	6.8	59	78	9	368	31	21	2	44	1.66
41505090--41505449	117	3.1	116	82	6	424	31	20	2	44	1.65
41505303--41505390	30	3.0	30	81	3	115	31	15	4	47	1.66
41505304--41505400	30	3.3	29	76	15	81	28	18	4	48	1.66
41505099--41505461	29	12.4	28	67	14	110	30	22	2	45	1.65
41505498--41505571	28	2.6	29	78	6	80	33	27	6	32	1.83
41505101--41505543	59	7.6	58	75	8	251	31	22	2	43	1.68
41505276--41505520	118	2.1	118	83	3	287	31	24	3	40	1.71
41517611--41518250	201	3.2	200	87	3	888	34	18	23	23	1.96
41517665--41518272	206	3.0	204	87	3	841	34	18	24	23	1.96
41518577--41518672	17	5.5	17	82	3	111	37	2	3	57	1.26
41518575--41518672	35	2.8	35	81	3	117	37	2	3	57	1.26
41518582--41518672	6	15.8	6	68	8	55	38	2	3	56	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41520512--41520894	85	4.5	86	84	2	459	28	17	27	26	1.98
41520518--41520890	128	2.9	128	86	4	477	29	17	26	26	1.97
41520512--41520894	171	2.2	170	83	2	482	28	17	27	26	1.98
41520512--41520894	43	9.0	43	84	1	466	28	17	27	26	1.98
41521732--41521766	18	1.9	18	88	0	52	57	0	0	42	0.99
41527052--41527081	13	2.3	13	94	0	51	36	26	6	30	1.82
41530731--41530797	31	2.2	32	75	24	74	34	7	16	41	1.76
41530982--41531062	31	2.6	30	83	9	92	45	14	9	29	1.77
41537852--41537914	29	2.1	28	82	8	72	31	1	12	53	1.48
41539784--41540275	59	8.4	59	89	1	720	34	5	29	30	1.80
41540232--41540336	30	3.5	30	81	8	108	35	1	25	37	1.67
41540425--41540742	161	2.0	163	88	5	484	45	13	16	24	1.83
41541517--41541563	10	4.8	10	86	5	69	40	2	0	57	1.11
41542002--41542040	20	2.0	20	89	0	60	17	20	46	15	1.84
41542086--41542110	12	2.1	12	100	0	50	16	24	24	36	1.94
41542083--41542135	26	2.0	28	85	7	74	20	18	26	33	1.96
41542083--41542135	14	3.9	14	80	9	65	20	18	26	33	1.96
41542159--41542254	6	16.0	6	72	16	74	47	2	1	48	1.20
41542187--41542245	25	2.5	23	81	10	73	52	3	1	42	1.28
41542183--41542256	31	2.5	31	85	12	95	52	2	1	43	1.23
41542184--41542254	17	4.4	17	74	16	71	53	2	1	42	1.24
41542587--41543231	68	9.5	68	95	0	1110	27	20	17	34	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41543919--41543956	13	2.8	13	88	4	58	15	0	0	84	0.63
41543919--41543950	14	2.3	14	94	0	55	15	0	0	84	0.63
41555212--41555759	59	9.3	59	87	1	762	35	5	28	30	1.79
41555263--41555759	30	16.9	29	67	12	217	36	5	27	30	1.79
41555731--41555822	30	3.0	30	82	6	105	33	2	27	36	1.69
41555911--41556228	161	2.0	163	88	5	484	44	13	16	25	1.83
41557004--41557050	10	4.8	10	86	5	69	40	2	0	57	1.11
41557488--41557526	20	2.0	20	89	0	60	17	20	46	15	1.84
41557572--41557596	12	2.1	12	100	0	50	16	24	24	36	1.94
41557569--41557621	14	3.9	14	82	9	74	18	18	28	33	1.95
41557645--41557740	6	16.0	6	72	16	74	47	2	1	48	1.20
41557673--41557731	25	2.5	23	81	10	73	52	3	1	42	1.28
41557669--41557742	31	2.5	31	85	12	95	52	2	1	43	1.23
41557670--41557740	17	4.4	17	74	16	71	53	2	1	42	1.24
41560893--41560942	25	2.0	25	100	0	100	32	4	28	36	1.76
41561895--41561962	33	2.1	33	97	0	127	41	8	29	20	1.82
41563750--41563786	15	2.4	16	86	9	58	56	0	0	43	0.99
41579950--41580084	29	4.7	28	72	20	84	37	3	29	29	1.75
41579965--41580110	58	2.5	58	82	11	158	36	4	28	30	1.76
41580096--41580384	30	9.7	30	76	9	236	42	2	16	38	1.63
41580061--41580375	88	3.5	88	80	7	352	42	2	18	36	1.64
41580091--41580384	118	2.5	115	84	8	374	41	2	17	37	1.64
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41581556--41581589	16	2.1	16	94	0	59	44	2	0	52	1.16
41582296--41582367	17	4.2	17	85	3	92	52	1	0	45	1.09
41582311--41582367	6	10.0	6	77	11	66	52	1	0	45	1.11
41582311--41582367	11	5.0	12	79	10	66	52	1	0	45	1.11
41583700--41583752	17	3.1	17	88	2	79	37	0	3	58	1.16
41583719--41583760	6	7.0	6	81	10	50	45	0	2	52	1.13
41583736--41583761	13	2.0	13	100	0	52	53	0	0	46	1.00
41583767--41583807	21	2.0	20	85	4	55	51	17	4	26	1.65
41584550--41584590	13	3.1	14	75	10	50	78	7	2	12	1.06
41584548--41584608	32	1.9	31	83	9	79	72	9	3	14	1.24
41585344--41585495	30	5.1	30	78	8	159	34	30	5	29	1.81
41586954--41587035	27	3.0	27	85	1	110	24	14	23	37	1.92
41587021--41587101	24	3.4	24	80	0	90	25	19	24	29	1.99
41589900--41589930	16	1.9	16	93	0	53	48	41	3	6	1.45
41604341--41604365	13	1.9	13	100	0	50	72	0	0	28	0.86
41613099--41613137	5	8.0	5	88	5	62	38	0	2	58	1.12
41616057--41616109	22	2.4	22	83	0	61	64	15	13	7	1.49
41619736--41619928	30	6.5	28	76	12	163	37	25	5	31	1.78
41619771--41619966	59	3.3	59	81	5	209	35	27	5	31	1.80
41622056--41622102	15	3.4	14	77	16	53	31	0	2	65	1.04
41623161--41623217	21	2.7	21	94	0	96	40	22	10	26	1.86
41623164--41623235	21	3.3	21	82	9	65	43	26	9	20	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41623855--41624102	52	4.8	51	83	3	289	37	20	13	27	1.91
41623818--41624084	104	2.6	104	84	0	327	37	20	13	27	1.91
41630558--41630611	19	3.2	19	68	29	57	31	5	0	62	1.18
41636362--41636403	18	2.3	19	80	12	52	54	0	0	45	0.99
41638349--41638398	24	2.1	24	100	0	100	40	12	10	38	1.76
41641106--41641150	24	1.9	24	86	4	65	40	2	0	57	1.11
41641110--41641158	25	1.9	26	87	4	73	42	2	0	55	1.11
41642040--41642100	30	2.1	30	87	3	88	19	3	13	63	1.42
41647629--41647675	16	3.0	17	79	14	57	55	21	0	23	1.44
41651125--41651166	8	5.2	8	80	11	50	66	0	0	33	0.92
41651125--41651166	16	2.6	17	81	11	61	66	0	0	33	0.92
41652684--41652743	31	1.9	31	86	0	84	45	13	11	30	1.79
41653928--41653984	21	2.8	20	76	10	62	29	28	7	35	1.83
41663137--41663199	25	2.5	25	76	0	63	38	0	9	52	1.34
41664282--41664352	35	2.0	35	97	0	133	28	5	36	29	1.80
41665000--41665067	31	2.2	31	86	0	91	32	10	10	47	1.71
41665639--41665705	29	2.2	31	84	12	86	29	1	4	64	1.22
41665952--41665994	15	2.9	15	86	10	61	55	2	13	27	1.51
41667220--41667261	17	2.4	18	80	15	52	40	0	0	59	0.97
41667756--41667802	25	2.0	24	88	12	71	29	4	6	59	1.41
41668731--41668833	53	1.9	53	100	0	206	32	17	6	43	1.75
41678528--41678580	25	2.1	26	85	3	72	13	22	26	37	1.91
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41679389--41679425	2	18.5	2	100	0	74	51	0	0	48	1.00
41679559--41679591	6	5.7	6	92	7	59	33	0	0	66	0.92
41681095--41681199	48	2.2	48	96	0	192	26	17	17	39	1.91
41681231--41681278	20	2.4	18	78	18	51	52	0	0	47	1.00
41681240--41681296	29	2.0	29	96	0	105	52	0	0	47	1.00
41681243--41681347	13	7.9	13	72	18	83	49	0	0	50	1.00
41681666--41681715	25	2.0	25	88	0	73	38	10	16	36	1.82
41694469--41694940	148	3.3	142	87	4	618	38	22	9	29	1.85
41702098--41702138	16	2.6	16	75	24	50	36	0	0	63	0.95
41704769--41704824	29	1.9	29	85	0	76	35	19	7	37	1.79

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135