genome.fa.s10.2.7.7.80.10.50.1000.72.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  72  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23777641--23778114	251	1.9	250	93	0	813	34	11	18	35	1.86
23786469--23786641	80	2.2	80	86	2	231	26	16	25	32	1.96
23786726--23786789	25	2.6	25	84	0	92	21	18	31	28	1.97
23791761--23791959	80	2.5	80	82	4	222	28	17	23	30	1.97
23791765--23791996	80	2.9	79	80	4	198	27	18	23	31	1.97
23792014--23792080	25	2.6	25	76	2	62	25	19	23	31	1.98
23797905--23797962	22	2.6	22	88	0	89	36	15	13	34	1.87
23799752--23799790	18	2.1	19	85	9	53	43	15	0	41	1.46
23801562--23801760	37	5.4	37	82	4	249	12	19	30	37	1.89
23806543--23806574	16	2.0	16	100	0	64	50	18	31	0	1.48
23808799--23808997	37	5.4	37	85	0	272	13	16	31	38	1.87
23808811--23808997	74	2.5	74	92	0	311	13	16	31	38	1.88
23808966--23809018	21	2.5	21	87	0	79	1	15	37	45	1.57
23808929--23809038	58	1.9	58	86	0	157	9	15	34	40	1.79
23810449--23810551	30	3.5	30	87	2	145	44	22	1	31	1.64
23811448--23811472	13	1.9	13	100	0	50	28	8	16	48	1.74
23822253--23822380	50	2.5	50	85	2	166	37	17	25	20	1.93
23822433--23822730	39	7.4	40	82	7	347	34	24	15	25	1.95
23822432--23822730	79	3.7	79	84	6	361	34	24	15	25	1.95
23822652--23822806	46	3.3	46	84	3	166	41	18	16	23	1.89
23824491--23824638	30	4.9	30	85	4	201	43	20	2	33	1.66
23838512--23838550	18	2.2	17	86	4	51	53	10	17	17	1.71
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23850777--23850823	18	2.6	18	80	12	60	61	0	36	2	1.08
23850776--23850830	15	3.4	16	75	12	51	58	0	36	5	1.21
23857669--23857796	56	2.3	56	80	0	166	36	17	18	27	1.93
23862185--23862224	20	2.0	20	85	0	53	25	15	2	57	1.50
23866035--23866486	43	10.5	43	72	7	200	23	18	19	38	1.93
23866062--23866466	86	4.7	86	76	3	278	23	18	18	39	1.92
23866125--23866486	86	4.2	86	77	6	282	24	18	17	38	1.92
23866146--23866488	175	2.0	174	84	1	445	24	17	17	39	1.91
23867921--23867954	9	3.9	9	92	3	52	29	35	0	35	1.58
23868723--23869093	23	16.1	23	88	0	526	33	5	14	46	1.67
23869151--23869290	36	3.9	36	90	0	226	27	13	24	35	1.93
23875984--23876038	5	10.8	5	76	16	51	76	3	1	18	1.02
23875985--23876038	22	2.6	22	83	13	62	75	3	1	18	1.03
23879516--23879550	16	2.1	17	89	5	54	42	11	0	45	1.40
23881262--23881295	14	2.3	15	85	5	52	55	5	5	32	1.48
23881418--23881473	5	10.8	5	78	14	60	76	1	1	19	0.96
23881426--23881471	16	2.8	17	80	12	60	76	0	2	21	0.90
23881445--23881477	11	3.1	11	82	8	50	81	0	6	12	0.85
23883299--23883323	12	2.1	12	100	0	50	28	8	0	64	1.22
23888252--23888318	28	2.3	30	77	10	77	37	7	8	46	1.64
23891210--23891341	17	7.9	17	76	6	108	44	23	8	23	1.80
23891253--23891329	34	2.3	35	91	6	124	46	22	7	23	1.77
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23891217--23891341	50	2.5	51	83	6	157	44	23	8	24	1.79
23894149--23894202	24	2.3	23	84	6	74	25	7	7	59	1.51
23896142--23896216	24	3.1	24	94	0	123	25	12	9	53	1.67
23896848--23896897	3	16.7	3	91	0	82	34	2	2	62	1.18
23898253--23898324	31	2.3	32	88	7	103	22	2	23	51	1.61
23898787--23898829	20	2.2	20	80	19	56	16	4	18	60	1.52
23899264--23899316	14	3.4	16	78	17	67	35	1	0	62	1.06
23899261--23899328	31	2.4	27	75	15	73	42	1	0	55	1.08
23899268--23899329	31	2.0	31	87	6	90	38	1	0	59	1.07
23899311--23899344	12	2.8	12	95	4	59	55	0	0	44	0.99
23899841--23899950	24	4.3	24	71	21	82	48	3	0	47	1.25
23899858--23899905	15	3.2	15	78	0	51	54	2	0	43	1.12
23899863--23899937	30	2.5	30	76	16	75	50	2	1	45	1.24
23899606--23900077	247	1.9	255	79	5	550	45	6	7	40	1.58
23900657--23900709	15	3.5	15	79	5	61	52	1	0	45	1.11
23901806--23901871	14	4.7	13	73	14	51	21	0	7	71	1.11
23908152--23908204	22	2.4	22	100	0	106	37	15	20	26	1.92
23908219--23908309	20	4.6	20	69	4	58	34	7	13	45	1.72
23910531--23910580	20	2.5	20	80	6	57	38	6	14	42	1.70
23916723--23916812	20	4.5	20	72	9	67	31	8	14	45	1.75
23920823--23920870	20	2.4	20	82	0	51	27	31	10	31	1.90
23922130--23922170	15	2.5	17	81	18	52	56	2	26	14	1.51
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
23931576--23931609	17	1.9	18	94	5	61	82	0	17	0	0.67
23931940--23931964	13	1.9	13	100	0	50	24	16	12	48	1.79
23933258--23933331	27	2.7	27	89	0	112	20	25	13	40	1.89
23934606--23934838	23	10.1	23	81	3	281	33	3	13	49	1.60
23944497--23944536	18	2.3	18	86	4	55	17	15	10	57	1.64
23947768--23947822	26	2.0	29	82	10	71	40	20	23	16	1.91
23963601--23963838	52	4.6	52	89	1	352	34	26	13	26	1.94
23970709--23970756	22	2.2	21	81	3	60	39	12	0	47	1.41
23976144--23976189	22	2.0	24	83	8	60	54	15	2	28	1.53
23977850--23978155	23	13.3	23	85	0	425	34	4	13	48	1.62
23978225--23978301	36	2.1	36	87	0	109	27	10	25	36	1.89
23984246--23984272	14	1.9	14	100	0	54	37	0	3	59	1.15
23985363--23985402	2	20.0	2	94	0	71	0	47	0	52	1.00
23988531--23988593	16	3.9	16	77	6	65	30	22	1	46	1.61
23992127--23992160	2	17.0	2	100	0	68	50	0	50	0	1.00
23993716--23993764	18	2.7	18	74	0	53	38	34	10	16	1.82
24018415--24018472	3	19.3	3	100	0	116	34	0	0	65	0.93
24019845--24019923	36	2.1	38	84	9	101	37	32	12	16	1.86
24019933--24019979	23	2.0	24	84	12	62	46	34	12	6	1.67
24019884--24020059	85	2.1	85	93	0	298	41	33	10	14	1.80
24033924--24034159	51	4.6	51	88	1	330	32	17	22	27	1.96
24034789--24034845	21	2.5	24	86	8	75	28	5	28	38	1.78
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24055954--24055989	18	1.9	19	88	5	56	38	8	8	44	1.65
24058250--24059322	547	2.0	546	83	3	1388	31	17	18	32	1.94
24066833--24066862	14	2.1	15	93	6	53	0	20	0	80	0.72
24066833--24066879	24	1.9	25	87	12	71	4	21	0	74	0.99
24075010--24075180	85	2.0	85	95	0	306	32	22	13	31	1.93
24092962--24093199	51	4.6	51	81	4	255	32	15	23	28	1.95
24097735--24097788	16	3.3	17	75	15	51	1	35	0	62	1.06
24106900--24106945	18	2.6	17	89	3	56	56	8	10	23	1.61
24106907--24106945	17	2.2	18	95	4	71	53	10	12	23	1.69
24114957--24115013	3	19.0	3	79	13	64	70	0	29	0	0.88
24114957--24115013	18	3.2	17	87	7	78	70	0	29	0	0.88
24114957--24115013	24	2.5	23	83	8	73	70	0	29	0	0.88
24124173--24124224	23	2.4	21	81	9	59	17	5	1	75	1.10
24132807--24132853	22	2.1	22	88	0	67	27	36	10	25	1.89
24136039--24136072	17	2.1	17	88	5	52	58	11	11	17	1.62
24138330--24138368	21	1.9	21	89	5	62	64	7	12	15	1.49
24144056--24144085	14	2.2	14	94	5	53	36	10	23	30	1.87
24150965--24151016	23	2.2	24	80	10	63	71	5	1	21	1.17
24157598--24157677	39	2.1	39	100	0	160	45	7	2	45	1.45
24158589--24158616	2	14.0	2	100	0	56	50	0	50	0	1.00
24160212--24160245	16	2.1	16	100	0	68	20	5	35	38	1.77
24162287--24162340	20	2.7	19	81	13	56	50	3	1	44	1.30
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
24162304--24162345	19	2.3	18	80	12	50	50	4	2	42	1.36
24163992--24164042	27	1.9	26	84	4	66	68	13	13	3	1.34
24168293--24168422	17	7.5	17	69	10	84	29	17	21	31	1.96
24168321--24168442	17	7.0	17	67	14	70	31	18	19	30	1.96
24168428--24168504	18	4.3	18	75	6	75	36	20	16	25	1.94
24170964--24171318	194	1.8	195	82	5	459	30	15	25	29	1.96
24180230--24180272	15	2.8	15	82	3	50	0	30	0	69	0.88
24180229--24180263	18	1.9	18	94	0	61	0	25	0	74	0.82
24190323--24190382	17	3.6	16	80	8	66	48	13	16	21	1.80
24190336--24190402	34	2.0	34	84	0	89	41	10	23	23	1.85

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135