genome.fa.s10.2.7.7.80.10.50.1000.7.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  7  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2923653--2923730	32	2.4	32	100	0	156	61	5	0	33	1.18
2923674--2923728	16	3.4	16	70	9	58	61	7	0	30	1.23
2935088--2935192	51	2.1	51	100	0	210	40	15	22	21	1.91
2935570--2935600	4	8.0	4	92	7	55	74	0	0	25	0.82
2940050--2940087	16	2.3	16	82	17	51	65	0	2	31	1.06
2948059--2948084	3	8.7	3	100	0	52	0	34	0	65	0.93
2951066--2951116	16	3.2	16	73	13	52	49	1	0	49	1.12
2959094--2959126	8	4.2	8	88	3	50	60	3	0	36	1.12
2959350--2959462	4	28.0	4	69	24	51	70	3	2	23	1.15
2959299--2959462	72	2.1	78	82	9	196	67	3	6	23	1.27
2959354--2959409	22	2.5	22	83	11	62	71	3	1	23	1.11
2959347--2959462	16	7.7	16	71	18	81	70	3	2	23	1.15
2959532--2959716	13	13.5	13	66	20	51	67	3	3	24	1.24
2962613--2962646	14	2.4	14	90	5	50	29	0	2	67	1.05
2969147--2969312	86	1.9	85	91	1	269	45	4	11	38	1.62
2972119--2972158	9	4.4	9	83	0	53	55	45	0	0	0.99
2980191--2980225	17	2.0	18	94	5	63	85	2	11	0	0.69
2987407--2987437	6	5.2	6	100	0	62	32	35	0	32	1.58
2989468--2989543	38	2.0	38	100	0	152	44	5	26	23	1.74
2993359--2993406	12	3.9	12	75	5	51	60	16	6	16	1.55
3006670--3006699	6	5.0	6	91	0	51	33	0	3	63	1.11
3007613--3007668	3	18.7	3	100	0	112	33	0	0	66	0.92
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3008646--3008675	15	1.9	16	93	6	53	70	3	13	13	1.30
3009466--3009512	6	7.8	6	81	9	60	65	2	0	31	1.04
3009466--3009512	17	2.6	18	83	10	60	65	2	0	31	1.04
3009466--3009511	23	2.0	24	86	4	67	65	2	0	32	1.05
3010128--3010326	107	1.9	106	80	6	231	27	25	9	37	1.86
3015031--3015070	21	1.9	21	89	0	62	25	17	15	42	1.88
3015038--3015081	21	2.1	21	82	0	52	27	15	15	40	1.88
3016610--3016670	22	2.8	22	80	7	63	72	3	9	14	1.24
3018877--3018926	25	2.0	25	100	0	100	36	8	4	52	1.50
3018881--3018934	25	2.2	25	86	0	72	40	5	3	50	1.44
3025513--3025552	20	2.0	20	85	4	55	20	5	5	70	1.26
3026175--3026241	20	3.3	20	73	24	61	52	0	0	47	1.00
3040827--3040881	5	11.0	5	75	14	51	18	0	3	78	0.90
3040836--3040881	22	2.2	20	84	7	56	15	0	4	80	0.86
3046322--3046367	17	2.7	17	69	24	51	32	15	15	36	1.88
3050737--3050791	27	2.0	27	83	13	69	43	10	20	25	1.84
3053024--3053531	269	1.9	272	91	3	835	34	8	16	40	1.80
3053721--3053767	23	2.0	24	87	4	69	40	0	0	59	0.97
3054382--3054452	31	2.4	31	80	4	83	47	11	7	33	1.66
3057556--3057641	43	2.0	43	97	0	163	38	18	12	30	1.88
3067061--3067120	22	2.9	22	83	14	83	63	0	3	33	1.11
3067885--3067960	40	1.9	40	84	12	104	28	6	7	56	1.53
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3068887--3068992	50	2.1	50	91	0	167	39	13	15	32	1.85
3073149--3073182	17	2.1	17	88	5	52	50	8	5	35	1.58
3074221--3074252	3	10.7	3	100	0	64	34	0	0	65	0.93
3082697--3082729	15	2.1	16	94	5	59	54	0	0	45	0.99
3086104--3086155	15	3.5	15	79	7	52	65	0	0	34	0.93
3086101--3086157	23	2.5	22	80	11	60	66	0	0	33	0.92
3090204--3090246	21	2.0	22	90	4	70	72	4	6	16	1.24
3092297--3092344	26	1.9	26	83	8	64	43	0	22	33	1.54
3092428--3092494	20	3.1	21	87	6	82	11	26	23	37	1.90
3092434--3092519	22	4.0	22	82	10	88	12	23	23	40	1.89
3094819--3094850	14	2.4	14	90	10	50	62	0	3	34	1.11
3100997--3101065	34	2.0	35	78	13	81	28	0	13	57	1.36
3125964--3125994	12	2.6	12	94	0	53	45	6	3	45	1.45
3128589--3128628	19	2.1	19	86	9	55	25	0	2	72	0.97
3132146--3132175	13	2.3	13	94	0	51	33	0	3	63	1.11
3132204--3132253	19	2.6	20	78	9	59	34	0	2	64	1.05
3132402--3132467	18	3.7	18	79	4	62	39	10	1	48	1.47
3132439--3132480	19	2.2	19	91	0	66	40	9	4	45	1.58
3143694--3143740	12	4.0	12	86	2	60	27	19	14	38	1.91
3151141--3151167	3	9.0	3	100	0	54	33	0	0	66	0.92
3155094--3155130	19	2.0	18	89	5	56	35	8	10	45	1.69
3155833--3155890	30	1.9	30	82	6	73	51	1	25	20	1.57
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3155930--3155966	9	4.1	9	89	0	56	27	10	13	48	1.75
3155930--3155966	18	2.1	18	94	0	65	27	10	13	48	1.75
3158138--3158185	24	2.0	24	91	0	78	20	33	0	45	1.52
3164120--3164195	2	38.0	2	100	0	152	50	0	50	0	1.00
3172278--3172310	3	11.0	3	100	0	66	66	33	0	0	0.92
3175276--3175334	31	1.9	30	83	10	75	37	8	5	49	1.55
3187652--3187677	2	13.0	2	100	0	52	50	0	0	50	1.00
3189765--3189812	21	2.3	21	78	7	53	52	4	0	43	1.20
3189807--3189865	20	3.1	19	75	18	59	66	0	3	30	1.08
3189809--3189866	19	3.0	19	82	12	73	65	0	3	31	1.09
3189929--3189968	19	2.1	19	90	0	62	32	5	0	62	1.17
3189990--3190024	15	2.3	15	90	0	52	28	0	5	65	1.15
3190052--3190097	24	1.9	24	82	8	58	28	2	6	63	1.31
3203191--3203222	15	2.2	14	94	5	55	25	0	0	75	0.81
3203191--3203222	7	4.4	7	92	7	55	25	0	0	75	0.81
3203191--3203230	15	2.6	15	80	4	53	25	0	0	75	0.81
3203196--3203244	24	2.0	24	84	0	62	28	4	0	67	1.09
3209788--3209821	18	2.0	17	88	11	52	14	14	35	35	1.87
3228161--3228215	21	2.6	21	79	0	65	63	9	3	23	1.40
3232553--3232586	12	2.7	13	90	4	52	20	5	2	70	1.21
3236664--3236753	44	2.0	43	100	0	162	56	17	11	14	1.66
3241291--3241330	20	2.1	19	85	4	53	32	22	25	20	1.98
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3258955--3259082	23	5.5	22	74	15	89	10	31	20	37	1.87
3258996--3259083	25	3.7	24	76	15	92	11	30	19	38	1.87
3264992--3265024	2	16.5	2	93	0	57	51	0	0	48	1.00
3270992--3271026	4	8.8	4	93	0	61	25	2	22	48	1.64
3276552--3276704	69	2.2	69	88	1	218	61	12	1	24	1.39
3279492--3279562	31	2.2	32	87	9	85	39	4	1	54	1.28
3286231--3286386	58	2.7	57	78	11	174	49	10	13	26	1.74
3287443--3287467	8	3.1	8	100	0	50	40	0	0	60	0.97
3290508--3290554	21	2.2	20	78	14	51	10	34	0	55	1.35
3297275--3297307	13	2.4	14	90	5	50	72	0	0	27	0.85
3301991--3302024	2	17.0	2	93	0	59	47	0	2	50	1.16
3315101--3315156	28	2.0	28	83	13	71	58	0	1	39	1.08
3317666--3317747	41	2.0	41	97	0	155	21	32	7	37	1.81
3318442--3318471	2	15.0	2	92	0	51	46	0	3	50	1.18
3325894--3326175	144	2.0	144	98	0	546	22	19	18	39	1.92
3329113--3329164	20	2.6	20	81	0	59	50	21	3	25	1.65
3329134--3329171	20	1.9	20	94	0	67	50	21	0	28	1.49
3334125--3334182	23	2.6	23	88	2	82	36	27	22	13	1.92
3362466--3362549	42	2.0	42	97	0	159	29	21	23	25	1.99
3383707--3383764	31	1.9	30	89	10	91	25	10	6	56	1.57
3388697--3388741	25	1.9	22	86	13	63	15	26	8	48	1.74
3403822--3403956	34	4.0	34	97	0	252	26	14	14	44	1.83
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3413798--3413856	29	2.0	29	100	0	118	28	6	23	40	1.80
3418618--3418660	20	2.2	19	83	4	50	55	2	0	41	1.12
3454646--3454695	17	2.9	17	82	5	57	50	2	4	44	1.32
3454781--3454821	19	2.2	19	100	0	82	48	31	4	14	1.65
3457529--3457555	13	2.1	13	100	0	54	37	7	0	55	1.28
3458931--3459083	55	2.6	59	81	9	163	28	22	18	29	1.98
3459024--3459224	102	2.0	102	90	2	314	28	16	16	37	1.91
3459132--3459279	62	2.5	60	83	4	181	29	17	19	33	1.95
3460139--3460230	30	3.1	30	84	6	98	61	4	6	27	1.39
3462373--3462446	20	3.7	20	90	0	112	37	22	27	12	1.90

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135