genome.fa.s10.2.7.7.80.10.50.1000.121.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  121  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40192608--40192785	95	1.9	93	86	6	252	35	12	14	38	1.83
40192829--40193044	38	5.6	38	70	14	158	35	14	18	31	1.91
40192810--40193687	76	10.9	76	77	10	716	34	15	17	32	1.92
40192964--40193226	93	2.9	91	88	3	379	33	17	17	31	1.93
40193166--40193293	38	3.4	38	70	16	120	35	11	19	33	1.88
40192731--40193614	166	5.4	166	83	11	1096	34	15	17	32	1.92
40193332--40193727	38	10.4	38	68	18	225	35	13	17	33	1.89
40194022--40194065	18	2.5	17	89	10	63	43	0	4	52	1.22
40194237--40194283	20	2.4	20	76	16	62	21	40	14	23	1.90
40195915--40195995	29	2.8	29	81	10	85	39	24	2	33	1.69
40195951--40196289	59	5.8	59	85	3	425	30	29	4	35	1.78
40195925--40196230	29	10.5	29	68	25	123	31	28	4	35	1.77
40195952--40196289	117	2.9	115	84	7	423	30	28	4	35	1.78
40197556--40198819	392	3.2	394	98	0	2390	33	13	13	39	1.85
40198639--40198993	173	2.0	173	94	0	620	41	12	10	35	1.76
40199735--40199799	28	2.5	24	75	17	67	46	3	6	44	1.44
40199744--40199797	28	1.9	28	92	0	90	44	3	5	46	1.44
40206919--40206955	19	1.9	19	89	10	58	54	5	5	35	1.47
40207910--40207943	12	2.8	12	95	0	59	41	35	0	23	1.55
40217153--40217322	29	5.8	29	76	8	146	37	20	5	35	1.77
40217157--40217325	59	2.9	57	75	7	142	37	20	5	36	1.76
40221561--40221606	5	8.8	5	81	9	56	73	0	23	2	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40221563--40221604	11	3.9	11	84	3	59	71	0	26	2	0.98
40221563--40221622	32	1.9	31	83	10	77	71	0	26	1	0.95
40222809--40223001	104	1.9	104	91	0	314	27	19	9	43	1.82
40223324--40223713	49	7.9	49	69	7	207	36	14	26	23	1.93
40223361--40223727	98	3.7	98	81	3	407	36	13	26	23	1.92
40223590--40223738	49	3.0	47	73	9	120	35	16	28	20	1.94
40223361--40223745	196	2.0	196	84	0	500	36	13	26	23	1.92
40223979--40225069	78	13.9	78	85	2	1244	34	22	16	26	1.96
40224585--40225075	40	12.4	42	70	14	183	34	22	16	25	1.95
40226772--40226840	30	2.3	30	80	2	86	28	23	7	40	1.81
40226989--40227036	14	3.3	14	76	5	51	18	0	4	77	0.93
40226988--40227035	24	2.0	24	84	8	62	20	0	4	75	0.97
40229164--40229196	14	2.3	15	89	5	50	21	3	15	60	1.48
40230899--40230970	31	2.4	30	80	13	76	40	13	8	37	1.75
40231635--40231673	20	2.1	19	85	9	53	56	5	0	38	1.22
40231649--40231720	27	2.8	25	74	13	67	54	2	0	43	1.15
40238862--40238902	21	2.0	21	100	0	82	39	4	51	4	1.45
40240226--40240278	26	2.0	26	100	0	106	32	3	11	52	1.55
40244017--40244062	19	2.4	19	85	7	58	69	2	0	28	1.00
40254830--40254931	28	3.6	28	76	19	104	32	0	31	35	1.65
40254856--40255049	59	3.3	56	72	10	167	37	3	29	29	1.74
40255032--40255409	30	12.6	30	87	2	510	37	2	23	37	1.70
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40257068--40257120	27	2.0	27	96	0	97	13	15	28	43	1.84
40257070--40257129	14	4.3	14	87	6	86	13	13	30	43	1.82
40257774--40257969	38	5.4	36	65	21	106	30	18	14	35	1.92
40257766--40258033	68	3.8	71	84	8	334	29	20	15	35	1.93
40257844--40258578	68	10.9	68	90	3	1107	28	20	16	34	1.95
40259229--40259271	22	2.0	22	100	0	86	27	27	9	34	1.88
40270448--40270803	30	11.9	30	85	3	423	36	2	23	37	1.70
40272467--40272518	27	1.9	27	96	0	95	13	17	28	40	1.87
40272469--40272528	14	4.3	14	82	6	77	13	15	30	41	1.85
40272602--40272650	18	2.7	18	78	9	55	48	4	6	40	1.47
40274512--40274559	16	3.1	15	83	16	62	37	2	6	54	1.38
40274512--40274552	16	2.5	16	92	4	64	36	2	7	53	1.42
40286689--40286748	27	2.2	27	81	0	75	41	20	8	30	1.81
40297926--40297960	18	1.9	18	94	0	61	34	20	17	28	1.95
40301007--40301056	6	8.5	6	74	12	50	30	20	0	50	1.49
40305771--40305797	3	9.0	3	100	0	54	66	0	33	0	0.92
40311526--40311927	208	1.9	208	86	5	575	37	15	22	25	1.93
40313255--40313513	30	8.8	29	80	10	208	35	2	25	36	1.69
40314661--40314694	14	2.5	14	90	4	52	61	0	0	38	0.96
40315297--40315397	17	5.9	16	84	4	112	58	3	1	35	1.28
40315286--40315402	6	19.8	6	68	9	62	56	3	1	38	1.26
40315297--40315397	35	2.9	34	86	2	148	58	3	1	35	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40316996--40317050	28	2.0	28	100	0	110	21	30	18	29	1.97
40320228--40320362	39	3.5	39	80	0	162	25	17	31	25	1.97
40320189--40320397	78	2.7	78	76	1	231	24	17	31	25	1.97
40332736--40332905	29	5.7	29	82	8	159	34	4	27	34	1.78
40332765--40332902	59	2.3	59	82	6	161	36	5	26	32	1.78
40332763--40332905	30	4.8	29	80	10	123	34	4	26	33	1.78
40332794--40332977	30	6.2	30	74	9	101	38	3	23	34	1.71
40332871--40332991	59	2.0	60	83	3	154	40	3	21	34	1.70
40334364--40334467	6	17.7	6	70	10	63	56	3	0	38	1.24
40334365--40334427	23	2.6	24	85	7	83	55	3	1	39	1.25
40334370--40334427	24	2.5	23	85	2	71	55	3	1	39	1.27
40334372--40334464	17	5.1	17	72	16	78	58	4	1	36	1.25
40334837--40334866	14	2.1	14	93	0	51	43	0	0	56	0.99
40340176--40340236	5	11.8	5	79	6	50	68	4	1	24	1.18
40340176--40340236	31	2.0	31	86	0	86	68	4	1	24	1.18
40340252--40340347	30	3.3	29	81	5	104	35	8	22	33	1.84
40341329--40341360	8	3.8	9	84	16	50	21	0	0	78	0.76
40341370--40341399	4	7.8	4	92	7	53	76	0	0	23	0.78
40344815--40345019	30	6.9	30	86	1	191	31	2	28	37	1.72
40344829--40344991	90	1.8	89	84	6	222	30	3	28	38	1.72
40344829--40345019	90	2.1	90	81	4	217	31	3	27	37	1.73
40344936--40345035	30	3.3	30	94	0	173	38	4	23	35	1.73
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40346034--40346059	3	8.7	3	100	0	52	30	0	0	69	0.89
40352907--40352943	18	2.0	19	89	5	58	16	0	16	67	1.23
40353091--40353147	26	2.1	27	84	9	73	28	0	8	63	1.24
40354283--40354342	28	2.2	27	79	8	68	71	13	6	8	1.29
40362322--40362348	3	9.0	3	100	0	54	33	0	33	33	1.58
40365141--40365167	2	13.5	2	100	0	54	51	0	0	48	1.00
40374877--40374907	16	1.9	16	93	0	53	41	0	0	58	0.98
40375179--40375267	45	2.0	45	86	4	126	29	21	21	28	1.98
40377411--40377476	28	2.5	28	80	7	75	45	1	1	51	1.19
40377445--40377499	25	2.2	25	83	3	67	45	3	3	47	1.38
40380321--40380362	21	2.0	21	85	4	57	42	26	7	23	1.80
40383041--40383073	14	2.3	15	94	5	59	24	15	0	60	1.35
40384548--40384594	21	2.4	20	79	10	53	42	8	10	38	1.70
40384868--40384901	17	2.0	17	88	0	50	29	0	5	64	1.17
40390679--40390875	100	2.0	99	82	4	243	37	16	13	33	1.87
40390776--40391033	88	2.9	88	88	1	349	37	16	17	29	1.91
40394438--40394519	23	3.5	23	80	5	85	30	8	18	42	1.80
40394486--40394531	23	2.0	23	83	8	58	41	10	15	32	1.82
40395794--40395825	16	2.0	16	93	0	55	50	28	6	15	1.68
40395796--40395837	16	2.7	16	85	3	50	52	21	4	21	1.65
40399995--40400524	263	2.0	261	84	3	697	40	16	17	26	1.90
40403282--40403311	8	3.8	8	95	0	51	53	0	3	43	1.17
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
40404225--40404281	20	3.0	18	77	10	60	35	0	1	63	1.05
40404238--40404297	29	2.1	27	82	11	75	40	0	1	58	1.08
40405007--40405063	30	1.9	29	82	10	71	31	17	10	40	1.84
40407100--40407133	17	1.9	17	88	5	50	58	0	17	23	1.38
40412181--40412287	31	3.5	30	76	12	112	24	14	18	42	1.87
40413346--40413387	17	2.4	17	92	4	66	50	2	26	21	1.61
40413360--40413407	24	2.0	24	95	0	87	47	0	29	22	1.51
40420486--40420639	34	4.5	34	87	1	202	32	12	12	42	1.80
40420486--40420639	68	2.3	68	89	0	227	32	12	12	42	1.80
40422669--40422721	27	2.0	27	88	0	79	49	11	3	35	1.57

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135