genome.fa.s10.2.7.7.80.10.50.1000.114.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: CP032254.1 Gossypioides kirkii chromosome KI_12
Parameters: 2 7 7 80 10 50 1000
Length:  43711324

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135   

This is table  114  of  135  ( 16099 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38572780--38573281	76	6.8	76	88	6	723	34	16	16	32	1.92
38572513--38573021	267	1.9	267	95	0	912	34	15	17	33	1.91
38572979--38573080	32	3.2	32	61	18	75	32	19	14	33	1.92
38572780--38573281	141	3.4	144	87	8	653	34	16	16	32	1.92
38572810--38573237	217	2.0	216	95	0	775	34	17	15	32	1.91
38574120--38574156	3	12.3	3	88	0	56	62	0	2	35	1.10
38574930--38575303	162	2.3	161	82	4	434	25	17	13	42	1.86
38575373--38575999	29	21.5	28	69	22	309	33	29	2	34	1.71
38575343--38576004	58	11.4	58	87	5	806	33	30	2	33	1.72
38576109--38576154	15	3.0	16	75	12	51	23	15	6	54	1.64
38577603--38577632	3	10.0	3	100	0	60	33	0	0	66	0.92
38578245--38578289	19	2.4	19	88	7	65	66	2	2	28	1.15
38581488--38581557	26	2.7	26	88	0	86	61	12	1	24	1.40
38583781--38583823	12	3.7	12	84	3	52	2	4	23	69	1.18
38583743--38583818	32	2.4	31	76	10	82	5	5	21	68	1.29
38583791--38583842	24	2.2	24	89	0	77	5	1	21	71	1.17
38583728--38583857	20	6.0	22	72	12	81	6	3	21	68	1.28
38583970--38584030	22	2.7	22	76	11	61	24	0	8	67	1.18
38584265--38584319	29	1.9	29	89	10	87	45	14	5	34	1.68
38594060--38594145	41	2.1	42	86	2	120	36	19	13	30	1.91
38597874--38597910	16	2.3	16	95	0	65	35	5	13	45	1.66
38598878--38598917	21	1.9	21	84	0	53	57	22	0	20	1.41
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38599334--38599358	12	2.1	12	100	0	50	68	0	8	24	1.16
38599375--38599494	47	2.6	44	78	15	118	33	5	3	58	1.36
38599463--38599513	18	2.8	18	81	0	66	33	5	1	58	1.33
38599509--38599560	18	2.8	18	80	8	52	28	1	1	67	1.12
38599610--38599824	88	2.4	89	82	4	256	33	8	18	39	1.82
38600027--38600051	8	3.1	8	100	0	50	36	0	0	64	0.94
38602691--38602730	21	1.9	21	85	10	55	37	22	2	37	1.68
38603983--38604401	71	5.9	71	87	0	568	33	24	17	24	1.97
38604862--38604893	16	2.0	16	93	0	55	25	18	3	53	1.59
38606436--38606699	55	4.8	55	80	2	262	24	17	23	34	1.96
38608426--38608559	30	4.4	29	73	11	101	36	3	22	37	1.72
38609812--38609871	30	2.0	30	83	6	77	8	16	23	51	1.71
38615585--38615621	19	1.9	19	88	0	56	62	2	0	35	1.10
38616834--38616891	29	2.1	27	83	6	71	34	10	1	53	1.45
38622828--38622868	7	5.9	7	94	0	73	41	0	2	56	1.13
38627991--38628084	30	3.2	30	83	1	109	52	26	13	7	1.67
38632653--38632694	22	1.9	22	90	0	66	47	4	9	38	1.57
38635367--38635489	29	4.3	30	72	16	102	30	6	9	52	1.59
38635910--38635968	31	1.9	31	89	0	91	44	5	10	40	1.60
38636483--38636520	11	3.2	12	85	11	51	63	5	0	31	1.17
38636754--38636795	20	2.1	20	100	0	84	35	35	9	19	1.84
38642508--38642544	3	12.3	3	100	0	74	35	0	0	64	0.94
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38647319--38647380	11	5.5	11	75	11	63	14	8	24	53	1.68
38647346--38647374	12	2.5	12	94	5	51	13	10	24	51	1.72
38647319--38647382	23	2.8	23	77	11	69	15	7	23	53	1.68
38648059--38648108	21	2.4	21	93	0	91	36	30	22	12	1.90
38648817--38648858	19	2.2	19	95	0	75	47	21	9	21	1.79
38648909--38648941	16	2.1	16	94	0	57	48	24	18	9	1.76
38649274--38649316	3	14.7	3	85	4	61	2	27	2	67	1.15
38649286--38649324	9	4.6	8	90	3	51	2	23	0	74	0.94
38649557--38649589	3	11.0	3	100	0	66	33	0	0	66	0.92
38653013--38653039	8	3.4	8	100	0	54	51	11	0	37	1.37
38654962--38655004	20	2.2	20	87	8	61	46	6	2	44	1.43
38659866--38659904	17	2.3	17	90	0	60	15	12	25	46	1.81
38660725--38660765	21	2.0	21	100	0	82	34	0	31	34	1.58
38667604--38667787	23	8.4	23	71	12	86	70	17	3	8	1.27
38667600--38667655	21	2.6	21	78	16	60	69	16	0	14	1.19
38667705--38667782	21	3.7	21	76	8	77	67	17	6	7	1.36
38667747--38667796	21	2.3	21	86	3	64	70	20	2	8	1.23
38667895--38667959	31	2.1	32	85	8	89	15	21	15	47	1.82
38670088--38670304	28	7.6	28	80	7	222	40	11	21	26	1.87
38670087--38670286	86	2.3	85	80	9	228	41	11	21	26	1.86
38679842--38679867	9	2.9	9	100	0	52	7	11	11	69	1.37
38683958--38684131	27	6.5	27	84	1	188	32	21	18	27	1.97
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38683972--38684115	53	2.7	54	81	2	173	34	20	20	25	1.97
38686276--38686323	25	1.9	25	83	8	62	39	8	22	29	1.83
38685950--38686731	395	2.0	395	99	0	1555	33	15	26	23	1.95
38686671--38686718	25	1.9	25	87	8	71	41	8	22	27	1.82
38687482--38687515	16	2.1	17	88	5	52	14	0	2	82	0.79
38688003--38688027	7	3.6	7	100	0	50	44	0	0	56	0.99
38689489--38689541	23	2.3	24	78	21	60	64	16	16	1	1.39
38690603--38690651	25	2.0	25	91	0	80	36	14	0	48	1.44
38690692--38690737	24	1.9	24	86	0	65	28	13	2	56	1.48
38694271--38694399	59	2.2	59	83	6	163	55	11	21	11	1.67
38696017--38696650	98	6.5	98	79	4	539	36	15	25	21	1.94
38696022--38696665	147	4.4	147	81	2	641	36	16	25	22	1.94
38696018--38696665	49	13.2	48	78	3	472	36	16	25	22	1.94
38696515--38696698	98	1.9	98	82	6	230	42	14	21	21	1.88
38697406--38697455	24	2.1	24	85	14	68	68	10	16	6	1.38
38698166--38698619	232	2.0	231	89	0	692	21	21	16	40	1.91
38698744--38698792	25	2.0	25	87	0	71	36	12	2	48	1.52
38698834--38698880	24	1.9	25	91	4	78	27	14	0	57	1.38
38701189--38701250	4	15.5	4	82	0	70	40	24	9	25	1.85
38701189--38701251	16	3.9	16	87	0	81	39	23	11	25	1.88
38701842--38701899	2	29.0	2	100	0	116	50	0	0	50	1.00
38702663--38702944	39	7.2	39	78	1	287	23	18	21	36	1.95
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38702665--38702944	117	2.4	117	88	0	425	22	18	21	37	1.94
38706017--38706054	19	2.0	19	90	10	60	68	5	0	26	1.11
38706021--38706070	21	2.4	22	83	12	61	70	2	2	26	1.09
38706282--38706450	10	17.4	10	67	19	92	63	2	1	32	1.14
38706274--38706401	29	4.4	29	75	18	115	63	3	0	32	1.16
38706345--38706438	39	2.5	37	77	14	93	59	2	1	37	1.16
38706615--38706674	3	20.0	3	92	0	102	33	1	1	63	1.14
38707079--38707150	28	2.5	28	78	17	76	30	2	4	62	1.28
38707075--38707122	19	2.5	19	80	10	53	31	2	2	64	1.16
38707078--38707171	20	4.8	20	74	18	67	29	3	5	61	1.33
38711781--38711992	107	2.0	107	96	0	388	33	14	18	33	1.91
38715013--38715066	18	2.8	18	91	8	81	18	31	5	44	1.73
38718973--38719004	15	2.1	15	94	0	55	34	12	18	34	1.89
38719239--38719275	15	2.5	15	100	0	74	0	21	8	70	1.13
38720226--38720271	9	5.2	9	80	10	51	39	0	0	60	0.97
38720220--38720330	27	4.0	27	69	24	72	36	1	1	60	1.18
38720226--38720271	19	2.6	18	80	12	51	39	0	0	60	0.97
38726001--38726191	39	4.9	39	84	0	240	27	18	17	35	1.94
38732532--38732733	39	5.2	39	85	0	233	23	19	20	36	1.95
38732542--38732733	78	2.5	78	87	1	260	22	20	20	36	1.95
38740509--38740622	60	1.9	60	87	7	169	29	12	0	57	1.35
38740529--38740659	60	2.2	59	81	10	151	29	9	0	61	1.28
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
38740872--38740910	17	2.3	17	86	8	53	23	0	5	71	1.05
38743022--38743159	38	3.6	38	80	0	141	13	18	31	36	1.90
38745314--38745673	200	1.8	190	81	7	443	26	25	18	29	1.98
38749702--38749751	15	3.3	15	78	15	59	36	0	0	64	0.94
38749676--38749751	30	2.5	31	82	16	97	34	3	0	61	1.14
38749905--38749945	16	2.5	17	82	17	52	43	4	17	34	1.70
38750386--38750494	28	3.9	28	70	15	91	34	12	11	40	1.80
38750885--38750918	17	2.0	17	94	0	59	32	0	38	29	1.58
38751515--38751576	27	2.4	25	76	12	63	46	0	0	53	1.00
38751546--38751635	33	2.8	33	85	11	123	44	1	0	54	1.07

Tables:   1   2   3   4   5   6   7   8   9   10   11   12   13   14   15   16   
          17   18   19   20   21   22   23   24   25   26   27   28   29   30   31   32   
          33   34   35   36   37   38   39   40   41   42   43   44   45   46   47   48   
          49   50   51   52   53   54   55   56   57   58   59   60   61   62   63   64   
          65   66   67   68   69   70   71   72   73   74   75   76   77   78   79   80   
          81   82   83   84   85   86   87   88   89   90   91   92   93   94   95   96   
          97   98   99   100   101   102   103   104   105   106   107   108   109   110   111   112   
          113   114   115   116   117   118   119   120   121   122   123   124   125   126   127   128   
          129   130   131   132   133   134   135